FC868508

Overview
NameFC868508
Unique NameFC868508
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length677
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868508 vs. ExPASy Swiss-Prot
Match: IF4A_CANAL (ATP-dependent RNA helicase eIF4A OS=Candida albicans GN=TIF1 PE=3 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 2.772e-48
Identity = 87/170 (51.18%), Postives = 127/170 (74.71%), Query Frame = 3
Query:  165 ITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVVLAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYR 674
            +  FD + +K +++RGI+ YG+E PSAIQQRA++PI +GRDV+AQAQSGTGKT+   ++  Q ++ + +  QALIL+PTRELA Q + V+ AIG ++ +  HA +GG S+ +DI     GV +V GTPGRV DMI+R+  +T  +K+ +LDE+DEMLS GFK+QIY+++R
Sbjct:   22 VYKFDDLNLKPNIVRGIFGYGYETPSAIQQRAILPITEGRDVLAQAQSGTGKTATFTISALQRINENEKATQALILAPTRELALQIKNVITAIGLYLKVTVHASIGGTSMSDDIEAFRSGVQIVVGTPGRVLDMIERRYFKTDKVKMFILDEADEMLSSGFKEQIYNIFR 191          
BLAST of FC868508 vs. ExPASy Swiss-Prot
Match: IF4A_ASHGO (ATP-dependent RNA helicase eIF4A OS=Ashbya gossypii GN=TIF1 PE=3 SV=1)

HSP 1 Score: 191.045 bits (484), Expect = 4.728e-48
Identity = 92/169 (54.44%), Postives = 123/169 (72.78%), Query Frame = 3
Query:  165 ITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVVLAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVY 671
            +  FD + +K+ LLRGIY YGF  PSAIQQRA++PII+G DV+AQAQSGTGKT   ++   Q +D S +  QALIL+PTRELA Q +KVV+A+   ++++ HAC+GG    ED   L  G  +V GTPGRV DMI+R+  +T  IK+ +LDE+DEMLS GFK+QIY ++
Sbjct:   21 VHKFDELKLKEVLLRGIYGYGFVDPSAIQQRAILPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDESIKAPQALILAPTRELALQIQKVVMALALHMDVKVHACIGGTDPREDAEALRAGAQIVVGTPGRVFDMIERRNFKTDHIKMFILDEADEMLSSGFKEQIYKIF 189          
BLAST of FC868508 vs. ExPASy Swiss-Prot
Match: IF4A_YEAST (ATP-dependent RNA helicase eIF4A OS=Saccharomyces cerevisiae GN=TIF1 PE=1 SV=3)

HSP 1 Score: 189.504 bits (480), Expect = 1.375e-47
Identity = 93/171 (54.39%), Postives = 126/171 (73.68%), Query Frame = 3
Query:  159 EAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVVLAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVY 671
            + +  FD M + ++LLRG++ YGFE+PSAIQQRA+MPII+G DV+AQAQSGTGKT   ++   Q +DTS +  QAL+L+PTRELA Q +KVV+A+   ++I+ HAC+GG S  ED   L     +V GTPGRV D I+R+  RT  IK+ +LDE+DEMLS GFK+QIY ++
Sbjct:   19 KVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGL-RDAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEMLSSGFKEQIYQIF 188          
BLAST of FC868508 vs. ExPASy Swiss-Prot
Match: IF4A_YEAS7 (ATP-dependent RNA helicase eIF4A OS=Saccharomyces cerevisiae (strain YJM789) GN=TIF1 PE=3 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 1.375e-47
Identity = 93/171 (54.39%), Postives = 126/171 (73.68%), Query Frame = 3
Query:  159 EAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVVLAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVY 671
            + +  FD M + ++LLRG++ YGFE+PSAIQQRA+MPII+G DV+AQAQSGTGKT   ++   Q +DTS +  QAL+L+PTRELA Q +KVV+A+   ++I+ HAC+GG S  ED   L     +V GTPGRV D I+R+  RT  IK+ +LDE+DEMLS GFK+QIY ++
Sbjct:   19 KVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGL-RDAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEMLSSGFKEQIYQIF 188          
BLAST of FC868508 vs. ExPASy Swiss-Prot
Match: IF4A_VANPO (ATP-dependent RNA helicase eIF4A OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294) GN=TIF1 PE=3 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 1.164e-46
Identity = 89/171 (52.05%), Postives = 126/171 (73.68%), Query Frame = 3
Query:  159 EAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVVLAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVY 671
            + +  FD M +KD+LL+G+Y YGFE+PSAIQQRA++PI++  DV+AQAQSGTGKT   ++   Q +D+S +  QALIL+PTRELA Q +KVV+A+   ++++ HAC+GG S  ED   L+    +V GTPGRV D I+R   +T  IK+ +LDE+DEMLS GF++QIY ++
Sbjct:   20 KVVYKFDDMNLKDELLKGVYGYGFEEPSAIQQRAILPIVEEHDVLAQAQSGTGKTGTFSIAALQRIDSSIKAPQALILAPTRELALQIQKVVIALAFHMDVKVHACIGGTSFVEDTEGLK-DAQIVVGTPGRVSDNIQRHRFKTDNIKMFILDEADEMLSSGFREQIYQIF 189          
BLAST of FC868508 vs. ExPASy Swiss-Prot
Match: IF4A_TRYBB (Probable eukaryotic initiation factor 4A OS=Trypanosoma brucei brucei GN=Tb09.160.3270 PE=3 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 2.594e-46
Identity = 93/179 (51.96%), Postives = 127/179 (70.95%), Query Frame = 3
Query:  153 GVEAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVVLAIGDFI----NIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRY 677
            G+  I SFD M +  +LLRGIY +GFEKPS+IQQRA++P  +G D+IAQAQSGTGKT   ++ + Q +D     +Q L+LSPTRELA QT +V+  IG+F+    +      VGG  V +D RKL+ G  V  GTPGRV D+ KR  +RT ++++LVLDE+DEMLS+GF +QIYD++R+
Sbjct:   21 GIRPIPSFDDMPLHQNLLRGIYSHGFEKPSSIQQRAIVPFTRGGDIIAQAQSGTGKTGAFSIGLLQRLDFRHNVLQGLVLSPTRELAMQTAEVITRIGEFLAEGSSSFCATFVGGTRVQDDYRKLQSGTIVAVGTPGRVVDVTKRGAMRTESLRVLVLDEADEMLSQGFAEQIYDIFRF 199          
BLAST of FC868508 vs. ExPASy Swiss-Prot
Match: IF4A_CANGA (ATP-dependent RNA helicase eIF4A OS=Candida glabrata GN=TIF1 PE=3 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 3.388e-46
Identity = 90/171 (52.63%), Postives = 123/171 (71.93%), Query Frame = 3
Query:  159 EAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVVLAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVY 671
            + +  FD M + + LLRG++ YGF KPSAIQQRA+MPII+G DV+AQAQSGTGKT   ++   Q +D + +  QAL+L+PTRELA Q +KVV+A+G  ++I+ HAC+GG S  ED   L     +V GTPGRV D I+R+  +   IK+ +LDE+DEMLS GFK+QIY ++
Sbjct:   20 KVVYEFDDMNLNEKLLRGVFGYGFNKPSAIQQRAIMPIIEGNDVLAQAQSGTGKTGTFSIAALQRIDPAIKAPQALMLAPTRELALQIQKVVMALGFHMDIKVHACIGGTSFVEDAEGL-RDAQIVVGTPGRVFDNIQRRKFKVDNIKMFILDEADEMLSTGFKEQIYQIF 189          
BLAST of FC868508 vs. ExPASy Swiss-Prot
Match: IF4A_TRYCR (Probable eukaryotic initiation factor 4A OS=Trypanosoma cruzi GN=Tc00.1047053511585.190 PE=3 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 1.287e-45
Identity = 93/179 (51.96%), Postives = 126/179 (70.39%), Query Frame = 3
Query:  153 GVEAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVVLAIGDFI----NIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRY 677
            G+  I SFD M +  +LLRGIY +GFEKPS+IQQRA++P  +G D+IAQAQSGTGKT   ++ + Q +D     +Q L+LSPTRELA QT +V+  IG+F+    +      VGG  V +D RKL+ G  V  GTPGRV D+ KR  +RT  +++LVLDE+DEMLS+GF +QIY+++RY
Sbjct:   21 GIRPIPSFDDMPLHQNLLRGIYSHGFEKPSSIQQRAIVPFTRGGDIIAQAQSGTGKTGAFSIGLLQRLDFRHNVLQGLVLSPTRELALQTAEVITRIGEFLAEGNSSFCATFVGGTRVQDDYRKLQAGSIVAVGTPGRVVDVTKRGAMRTEHLRVLVLDEADEMLSQGFAEQIYEIFRY 199          
BLAST of FC868508 vs. ExPASy Swiss-Prot
Match: DHH1_CANAL (ATP-dependent RNA helicase DHH1 OS=Candida albicans GN=DHH1 PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 5.074e-34
Identity = 74/169 (43.79%), Postives = 106/169 (62.72%), Query Frame = 3
Query:  171 SFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVVLAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRY 677
            SF+   +K +LL GI++ GFEKPS IQ+ ++   + GRD++A+A++GTGKT+   +   Q V     +VQALIL PTRELA QT +VV  +G  +  Q     GG S+ +DI +L   VH++ GTPGRV D+  RK +      L V+DE+D+MLSR FK  I  +  +
Sbjct:   31 SFEDFNLKRELLMGIFEAGFEKPSPIQEESIPMALAGRDILARAKNGTGKTASFIIPCLQLVKPKLNKVQALILVPTRELALQTSQVVRTLGKHVGTQCMVTTGGTSLRDDIVRLHDPVHILVGTPGRVLDLAARKVVDLSECPLFVMDEADKMLSREFKGIIEQILEF 199          
BLAST of FC868508 vs. ExPASy Swiss-Prot
Match: DHH1_PICGU (ATP-dependent RNA helicase DHH1 OS=Pichia guilliermondii GN=DHH1 PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 8.656e-34
Identity = 70/169 (41.42%), Postives = 106/169 (62.72%), Query Frame = 3
Query:  171 SFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVVLAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRY 677
            SF+  G+K +LL GI++ GFEKPS IQ+ ++   + GRD++A+A++GTGKT+   +   Q V T   ++Q LIL PTRELA QT +VV  +G  + +Q     GG  + +D+ +L+  VH++ GTPGRV D+  R         + V+DE+D+MLSR FK  I  +  +
Sbjct:   30 SFEEFGLKRELLMGIFEAGFEKPSPIQEESIPMALAGRDILARAKNGTGKTASFIIPALQQVKTKLNKIQVLILVPTRELALQTSQVVKTLGKHLKLQCMVTTGGTLLRDDVMRLDEPVHILVGTPGRVLDLAARSIADFSECPMFVMDEADKMLSREFKGIIEQILEF 198          
The following BLAST results are available for this feature:
BLAST of FC868508 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
IF4A_CANAL2.772e-4851.18ATP-dependent RNA helicase eIF4A OS=Candida albica... [more]
IF4A_ASHGO4.728e-4854.44ATP-dependent RNA helicase eIF4A OS=Ashbya gossypi... [more]
IF4A_YEAST1.375e-4754.39ATP-dependent RNA helicase eIF4A OS=Saccharomyces ... [more]
IF4A_YEAS71.375e-4754.39ATP-dependent RNA helicase eIF4A OS=Saccharomyces ... [more]
IF4A_VANPO1.164e-4652.05ATP-dependent RNA helicase eIF4A OS=Vanderwaltozym... [more]
IF4A_TRYBB2.594e-4651.96Probable eukaryotic initiation factor 4A OS=Trypan... [more]
IF4A_CANGA3.388e-4652.63ATP-dependent RNA helicase eIF4A OS=Candida glabra... [more]
IF4A_TRYCR1.287e-4551.96Probable eukaryotic initiation factor 4A OS=Trypan... [more]
DHH1_CANAL5.074e-3443.79ATP-dependent RNA helicase DHH1 OS=Candida albican... [more]
DHH1_PICGU8.656e-3441.42ATP-dependent RNA helicase DHH1 OS=Pichia guillier... [more]

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Properties
Property NameValue
Genbank descriptionC31001C05EF AbioticL1 Citrus clementina cDNA clone C31001C05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868508 ID=FC868508; Name=FC868508; organism=Citrus clementina; type=EST; length=677bp
GCTCACCTGGAAGAGGAAACTCTCATTGATTCTTTGATTTCGAAGAGTAA
TTGTTGCGAATTTCGTGCGAGATGGCGGCGGCGACGGCTATGCGGAGGAG
AGGAGGGGGCGGCGGAATGGATGACGACAAGATGGTGTTCGAAACAACGG
AAGGAGTGGAGGCAATCACGAGCTTCGACGCAATGGGAATAAAAGACGAT
CTGTTGCGTGGAATTTATCAGTACGGATTCGAGAAGCCATCGGCCATACA
ACAGAGGGCCGTTATGCCGATTATAAAGGGCCGTGATGTAATTGCACAGG
CCCAGTCTGGTACTGGCAAGACCTCTATGATTGCCCTAACTGTTTGCCAG
ACGGTCGATACTTCTAGCAGAGAGGTGCAGGCGTTGATTTTGTCACCTAC
GAGGGAGCTGGCGACGCAGACAGAGAAAGTGGTTTTGGCAATTGGTGATT
TTATTAACATACAAGCACATGCGTGTGTTGGAGGCAAAAGTGTCGGGGAA
GATATTAGGAAGTTAGAGCATGGAGTTCATGTGGTGTCTGGAACTCCGGG
TAGAGTCTGTGATATGATTAAGAGGAAAACTTTGCGTACTAGAGCTATTA
AATTATTGGTGCTTGATGAGTCTGATGAGATGCTGAGCAGAGGGTTCAAG
GATCAAATTTATGATGTGTACCGTTAT
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