FC868508

Overview
NameFC868508
Unique NameFC868508
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length677
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868508 vs. ExPASy Swiss-Prot
Match: DHH1_PICST (ATP-dependent RNA helicase DHH1 OS=Pichia stipitis GN=DHH1 PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.130e-33
Identity = 74/169 (43.79%), Postives = 105/169 (62.13%), Query Frame = 3
Query:  171 SFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVVLAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRY 677
            SF+   +K +LL GI++ GFEKPS IQ+ ++   + GRDV+A+A++GTGKT+   +   Q +     ++QALIL PTRELA QT +VV  +G  + IQ     GG S+ +DI +L   VHV+ GTPGRV D+  R         L V+DE+D+MLSR FK  I  +  +
Sbjct:   31 SFEDFNLKRELLMGIFEAGFEKPSPIQEESIPMALAGRDVLARAKNGTGKTASFIIPSLQQIKPKLNKIQALILVPTRELALQTSQVVRTLGKHLGIQCMVTTGGTSLKDDILRLNDPVHVLVGTPGRVLDLAARSVADLSECPLFVMDEADKMLSREFKGIIEQILEF 199          
BLAST of FC868508 vs. ExPASy Swiss-Prot
Match: IF4A_ENCCU (ATP-dependent RNA helicase eIF4A OS=Encephalitozoon cuniculi GN=TIF1 PE=1 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.476e-33
Identity = 76/173 (43.93%), Postives = 102/173 (58.96%), Query Frame = 3
Query:  156 VEAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVVLAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYR 674
            +    +++  G+K+DLL+GIY  GFE PS IQ+ A+ PII GRD+ AQAQSGTGKT   A+   Q  D S    Q L+L+ TRE+A Q       +G F+  +     GG  +  D   LE   H+V GTPGRV  MI    L    IKL V+DE+DEML  GF++Q+  ++R
Sbjct:   34 IRMFDTWEDYGLKEDLLKGIYSIGFETPSFIQKAAIQPIIDGRDIRAQAQSGTGKTGAFAVAALQICDMSQDVTQILVLASTREIAAQNAARFEDLGCFMGARVALLSGGSPIAADKVALEKKPHIVVGTPGRVEHMININELSMDNIKLFVIDEADEMLKAGFQEQVKSIFR 206          
BLAST of FC868508 vs. ExPASy Swiss-Prot
Match: DHH1_DEBHA (ATP-dependent RNA helicase DHH1 OS=Debaryomyces hansenii GN=DHH1 PE=3 SV=2)

HSP 1 Score: 140.969 bits (354), Expect = 5.610e-33
Identity = 71/169 (42.01%), Postives = 105/169 (62.13%), Query Frame = 3
Query:  171 SFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVVLAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRY 677
            +F+   +K +LL GI++ GFEKPS +Q+ ++   + GRD++A+A++GTGKT+   +   Q       ++QALIL PTRELA QT +VV  +G  + +Q     GG S+ +DI +L   VHV+ GTPGRV D+  RK        L V+DE+D+MLSR FK  I  +  +
Sbjct:   31 TFEDFPLKRELLMGIFEAGFEKPSPVQEESIPMALAGRDILARAKNGTGKTASFVIPCLQQARPKVNKIQALILVPTRELALQTSQVVRTLGKHLGLQCMVTTGGTSLRDDILRLNDPVHVLVGTPGRVLDLASRKVADLSECPLFVMDEADKMLSREFKGIIEQILAF 199          
BLAST of FC868508 vs. ExPASy Swiss-Prot
Match: DHH1_CANGA (ATP-dependent RNA helicase DHH1 OS=Candida glabrata GN=DHH1 PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 5.610e-33
Identity = 71/169 (42.01%), Postives = 104/169 (61.54%), Query Frame = 3
Query:  171 SFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVVLAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRY 677
            SF+   +K +LL GI++ GFEKPS IQ+ A+   I GRD++A+A++GTGKT+   +   + +     ++QALI+ PTRELA QT +V+  +G    +      GG ++ +DI +L   VHV+ GTPGRV D+  RK        L V+DE+D+MLSR FK  I  V  +
Sbjct:   32 SFEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKIKPKLNKIQALIMVPTRELALQTSQVIRTLGRHCGVSCMVTTGGTNLRDDILRLNETVHVLVGTPGRVLDLASRKVADLSECSLFVMDEADKMLSRDFKTIIEQVLTF 200          
BLAST of FC868508 vs. ExPASy Swiss-Prot
Match: RH12_ARATH (DEAD-box ATP-dependent RNA helicase 12 OS=Arabidopsis thaliana GN=RH12 PE=2 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 7.327e-33
Identity = 66/168 (39.29%), Postives = 110/168 (65.48%), Query Frame = 3
Query:  174 FDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVVLAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRY 677
            F+   +K DLL+GIY+ GFEKPS IQ+ ++   + G D++A+A++GTGKT    + V + +D ++  +QA+IL PTRELA QT +V   +  ++NIQ     GG S+ +DI +L   VH++ GTPGR+ D+ K+     +   +LV+DE+D++LS  F+  + ++ ++
Sbjct:  126 FEDYFLKRDLLKGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGKTGAFCIPVLEKIDPNNNVIQAMILVPTRELALQTSQVCKELSKYLNIQVMVTTGGTSLRDDIMRLHQPVHLLVGTPGRILDLTKKGVCVLKDCAMLVMDEADKLLSAEFQPSLEELIQF 293          
BLAST of FC868508 vs. ExPASy Swiss-Prot
Match: DHH1_YEAST (ATP-dependent RNA helicase DHH1 OS=Saccharomyces cerevisiae GN=DHH1 PE=1 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.250e-32
Identity = 70/169 (41.42%), Postives = 104/169 (61.54%), Query Frame = 3
Query:  171 SFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVVLAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRY 677
            +F+   +K +LL GI++ GFEKPS IQ+ A+   I GRD++A+A++GTGKT+   +   + V     ++QALI+ PTRELA QT +VV  +G    I      GG ++ +DI +L   VH++ GTPGRV D+  RK        L ++DE+D+MLSR FK  I  +  +
Sbjct:   47 TFEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVKPKLNKIQALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILRLNETVHILVGTPGRVLDLASRKVADLSDCSLFIMDEADKMLSRDFKTIIEQILSF 215          
BLAST of FC868508 vs. ExPASy Swiss-Prot
Match: DHH1_YEAS7 (ATP-dependent RNA helicase DHH1 OS=Saccharomyces cerevisiae (strain YJM789) GN=DHH1 PE=3 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.250e-32
Identity = 70/169 (41.42%), Postives = 104/169 (61.54%), Query Frame = 3
Query:  171 SFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVVLAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRY 677
            +F+   +K +LL GI++ GFEKPS IQ+ A+   I GRD++A+A++GTGKT+   +   + V     ++QALI+ PTRELA QT +VV  +G    I      GG ++ +DI +L   VH++ GTPGRV D+  RK        L ++DE+D+MLSR FK  I  +  +
Sbjct:   47 TFEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVKPKLNKIQALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILRLNETVHILVGTPGRVLDLASRKVADLSDCSLFIMDEADKMLSRDFKTIIEQILSF 215          
BLAST of FC868508 vs. ExPASy Swiss-Prot
Match: DHH1_VANPO (ATP-dependent RNA helicase DHH1 OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294) GN=DHH1 PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.632e-32
Identity = 68/166 (40.96%), Postives = 104/166 (62.65%), Query Frame = 3
Query:  171 SFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVVLAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDV 668
            +F+   +K +LL GI++ GFEKPS IQ+ ++   + GRD++A+A++GTGKT+   +   + V +   ++QALI+ PTRELA QT +VV  +G    I      GG ++ +DI +L   VH++ GTPGRV D+  RK        L ++DE+D+MLSR FK  I  +
Sbjct:   35 TFEDFYLKRELLMGIFEAGFEKPSPIQEESIPVALAGRDILARAKNGTGKTAAFVIPTLEKVKSKHNKIQALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILRLNETVHILVGTPGRVLDLASRKVADLSECNLFIMDEADKMLSRDFKSIIEQI 200          
BLAST of FC868508 vs. ExPASy Swiss-Prot
Match: DHH1_KLULA (ATP-dependent RNA helicase DHH1 OS=Kluyveromyces lactis GN=DHH1 PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 3.637e-32
Identity = 68/160 (42.50%), Postives = 101/160 (63.12%), Query Frame = 3
Query:  171 SFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVVLAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFK 650
            SF+   +K +LL GI++ GFEKPS IQ+ A+   I G+D++A+A++GTGKT+   +   + V     ++QALI+ PTRELA QT +VV  +G    I      GG ++ +DI +L   VH++ GTPGRV D+  R+        L ++DE+D+MLSR FK
Sbjct:   37 SFEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAIAGKDILARAKNGTGKTAAFVIPTLEKVKPKLNKIQALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDIMRLNEPVHILVGTPGRVLDLASRRVTDLSECHLFIMDEADKMLSRDFK 196          
BLAST of FC868508 vs. ExPASy Swiss-Prot
Match: EXP9_STRR6 (Probable ATP-dependent RNA helicase exp9 OS=Streptococcus pneumoniae (strain ATCC BAA-255 / R6) GN=exp9 PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 4.749e-32
Identity = 66/162 (40.74%), Postives = 106/162 (65.43%), Query Frame = 3
Query:  174 FDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVVLAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQI 659
            F+ + +  DLL  I + GF + S IQ++ +   ++G+DVI QAQ+GTGKT+   L   + + T    +QAL+++PTRELA Q+++ +   G    ++  +  GG S+ + I+ L+ G H+V GTPGR+ D+IKRK L+ + I+ L+LDE+DEML+ GF + I
Sbjct:    3 FNELNLSADLLAEIEKAGFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTLEKIRTEEATIQALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDLIKRKALKLQDIETLILDEADEMLNMGFLEDI 164          
The following BLAST results are available for this feature:
BLAST of FC868508 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DHH1_PICST1.130e-3343.79ATP-dependent RNA helicase DHH1 OS=Pichia stipitis... [more]
IF4A_ENCCU1.476e-3343.93ATP-dependent RNA helicase eIF4A OS=Encephalitozoo... [more]
DHH1_DEBHA5.610e-3342.01ATP-dependent RNA helicase DHH1 OS=Debaryomyces ha... [more]
DHH1_CANGA5.610e-3342.01ATP-dependent RNA helicase DHH1 OS=Candida glabrat... [more]
RH12_ARATH7.327e-3339.29DEAD-box ATP-dependent RNA helicase 12 OS=Arabidop... [more]
DHH1_YEAST1.250e-3241.42ATP-dependent RNA helicase DHH1 OS=Saccharomyces c... [more]
DHH1_YEAS71.250e-3241.42ATP-dependent RNA helicase DHH1 OS=Saccharomyces c... [more]
DHH1_VANPO1.632e-3240.96ATP-dependent RNA helicase DHH1 OS=Vanderwaltozyma... [more]
DHH1_KLULA3.637e-3242.50ATP-dependent RNA helicase DHH1 OS=Kluyveromyces l... [more]
EXP9_STRR64.749e-3240.74Probable ATP-dependent RNA helicase exp9 OS=Strept... [more]

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Properties
Property NameValue
Genbank descriptionC31001C05EF AbioticL1 Citrus clementina cDNA clone C31001C05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868508 ID=FC868508; Name=FC868508; organism=Citrus clementina; type=EST; length=677bp
GCTCACCTGGAAGAGGAAACTCTCATTGATTCTTTGATTTCGAAGAGTAA
TTGTTGCGAATTTCGTGCGAGATGGCGGCGGCGACGGCTATGCGGAGGAG
AGGAGGGGGCGGCGGAATGGATGACGACAAGATGGTGTTCGAAACAACGG
AAGGAGTGGAGGCAATCACGAGCTTCGACGCAATGGGAATAAAAGACGAT
CTGTTGCGTGGAATTTATCAGTACGGATTCGAGAAGCCATCGGCCATACA
ACAGAGGGCCGTTATGCCGATTATAAAGGGCCGTGATGTAATTGCACAGG
CCCAGTCTGGTACTGGCAAGACCTCTATGATTGCCCTAACTGTTTGCCAG
ACGGTCGATACTTCTAGCAGAGAGGTGCAGGCGTTGATTTTGTCACCTAC
GAGGGAGCTGGCGACGCAGACAGAGAAAGTGGTTTTGGCAATTGGTGATT
TTATTAACATACAAGCACATGCGTGTGTTGGAGGCAAAAGTGTCGGGGAA
GATATTAGGAAGTTAGAGCATGGAGTTCATGTGGTGTCTGGAACTCCGGG
TAGAGTCTGTGATATGATTAAGAGGAAAACTTTGCGTACTAGAGCTATTA
AATTATTGGTGCTTGATGAGTCTGATGAGATGCTGAGCAGAGGGTTCAAG
GATCAAATTTATGATGTGTACCGTTAT
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