FC868508

Overview
NameFC868508
Unique NameFC868508
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length677
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868508 vs. ExPASy Swiss-Prot
Match: EXP9_STRPN (Probable ATP-dependent RNA helicase exp9 OS=Streptococcus pneumoniae GN=exp9 PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 4.749e-32
Identity = 66/162 (40.74%), Postives = 106/162 (65.43%), Query Frame = 3
Query:  174 FDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVVLAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQI 659
            F+ + +  DLL  I + GF + S IQ++ +   ++G+DVI QAQ+GTGKT+   L   + + T    +QAL+++PTRELA Q+++ +   G    ++  +  GG S+ + I+ L+ G H+V GTPGR+ D+IKRK L+ + I+ L+LDE+DEML+ GF + I
Sbjct:    3 FNELNLSADLLAEIEKAGFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTLEKIRTEEATIQALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDLIKRKALKLQDIETLILDEADEMLNMGFLEDI 164          
BLAST of FC868508 vs. ExPASy Swiss-Prot
Match: CSHA_BACHK (DEAD-box ATP-dependent RNA helicase cshA OS=Bacillus thuringiensis subsp. konkukian GN=cshA PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 6.203e-32
Identity = 66/165 (40.00%), Postives = 103/165 (62.42%), Query Frame = 3
Query:  165 ITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVVLAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQI 659
            +T+F  +G+ D LL+ +   GFE+ + IQ   +   ++G+D+I QAQ+GTGKT+   L +   VDT    VQ ++++PTRELA Q  + +  IG    ++     GG+ +   IR L+   H++ GTPGR+ D I RKTLR + ++ +VLDE+DEML+ GF + I
Sbjct:    1 MTTFRELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDKVDTHKESVQGIVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKKHPHIIVGTPGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDI 165          
BLAST of FC868508 vs. ExPASy Swiss-Prot
Match: CSHA_BACCZ (DEAD-box ATP-dependent RNA helicase cshA OS=Bacillus cereus (strain ZK / E33L) GN=cshA PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 6.203e-32
Identity = 66/165 (40.00%), Postives = 103/165 (62.42%), Query Frame = 3
Query:  165 ITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVVLAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQI 659
            +T+F  +G+ D LL+ +   GFE+ + IQ   +   ++G+D+I QAQ+GTGKT+   L +   VDT    VQ ++++PTRELA Q  + +  IG    ++     GG+ +   IR L+   H++ GTPGR+ D I RKTLR + ++ +VLDE+DEML+ GF + I
Sbjct:    1 MTTFRELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDKVDTHKESVQGIVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKKHPHIIVGTPGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDI 165          
BLAST of FC868508 vs. ExPASy Swiss-Prot
Match: CSHA_BACCR (DEAD-box ATP-dependent RNA helicase cshA OS=Bacillus cereus (strain ATCC 14579 / DSM 31) GN=cshA PE=3 SV=2)

HSP 1 Score: 137.502 bits (345), Expect = 6.203e-32
Identity = 66/165 (40.00%), Postives = 103/165 (62.42%), Query Frame = 3
Query:  165 ITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVVLAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQI 659
            +T+F  +G+ D LL+ +   GFE+ + IQ   +   ++G+D+I QAQ+GTGKT+   L +   VDT    VQ ++++PTRELA Q  + +  IG    ++     GG+ +   IR L+   H++ GTPGR+ D I RKTLR + ++ +VLDE+DEML+ GF + I
Sbjct:    1 MTTFRELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDKVDTHKESVQGIVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKKHPHIIVGTPGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDI 165          
BLAST of FC868508 vs. ExPASy Swiss-Prot
Match: CSHA_BACC1 (DEAD-box ATP-dependent RNA helicase cshA OS=Bacillus cereus (strain ATCC 10987) GN=cshA PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 6.203e-32
Identity = 66/165 (40.00%), Postives = 103/165 (62.42%), Query Frame = 3
Query:  165 ITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVVLAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQI 659
            +T+F  +G+ D LL+ +   GFE+ + IQ   +   ++G+D+I QAQ+GTGKT+   L +   VDT    VQ ++++PTRELA Q  + +  IG    ++     GG+ +   IR L+   H++ GTPGR+ D I RKTLR + ++ +VLDE+DEML+ GF + I
Sbjct:    1 MTTFRELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDKVDTHKESVQGIVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKKHPHIIVGTPGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDI 165          
BLAST of FC868508 vs. ExPASy Swiss-Prot
Match: CSHA_BACAN (DEAD-box ATP-dependent RNA helicase cshA OS=Bacillus anthracis GN=cshA PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 6.203e-32
Identity = 66/165 (40.00%), Postives = 103/165 (62.42%), Query Frame = 3
Query:  165 ITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVVLAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQI 659
            +T+F  +G+ D LL+ +   GFE+ + IQ   +   ++G+D+I QAQ+GTGKT+   L +   VDT    VQ ++++PTRELA Q  + +  IG    ++     GG+ +   IR L+   H++ GTPGR+ D I RKTLR + ++ +VLDE+DEML+ GF + I
Sbjct:    1 MTTFRELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDKVDTHKESVQGIVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKKHPHIIVGTPGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDI 165          
BLAST of FC868508 vs. ExPASy Swiss-Prot
Match: CSHA_BACAH (DEAD-box ATP-dependent RNA helicase cshA OS=Bacillus thuringiensis (strain Al Hakam) GN=cshA PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 6.203e-32
Identity = 66/165 (40.00%), Postives = 103/165 (62.42%), Query Frame = 3
Query:  165 ITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVVLAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQI 659
            +T+F  +G+ D LL+ +   GFE+ + IQ   +   ++G+D+I QAQ+GTGKT+   L +   VDT    VQ ++++PTRELA Q  + +  IG    ++     GG+ +   IR L+   H++ GTPGR+ D I RKTLR + ++ +VLDE+DEML+ GF + I
Sbjct:    1 MTTFRELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDKVDTHKESVQGIVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKKHPHIIVGTPGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDI 165          
BLAST of FC868508 vs. ExPASy Swiss-Prot
Match: DDX6_DICDI (Probable ATP-dependent RNA helicase ddx6 OS=Dictyostelium discoideum GN=ddx6 PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 8.101e-32
Identity = 68/179 (37.99%), Postives = 112/179 (62.57%), Query Frame = 3
Query:  147 TEGVEAI--TSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVVLAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRY 677
            TE V A     FD + +K DLLRGI++ G+ KPS IQ++A+   + GRD++A+A++GTGKT+   +   +  D +   +Q LIL PTRELA QT +V   +G ++N+Q  A  GG S+ +DI +L + VH++  TPGRV D+ ++          +++DE+D++LS+ F+  +  +  +
Sbjct:   40 TEDVTATEGNDFDDLHLKRDLLRGIFEKGYVKPSPIQEKAIPIALAGRDIMARAKNGTGKTASFLIPALEKTDPTKDVIQVLILVPTRELALQTSQVCKELGKYMNVQVMASTGGTSLKDDIMRLYNPVHILVATPGRVLDLAQKNVANLSNCHTMIMDEADKLLSQEFQPLVEQLINF 218          
BLAST of FC868508 vs. ExPASy Swiss-Prot
Match: RH8_ARATH (DEAD-box ATP-dependent RNA helicase 8 OS=Arabidopsis thaliana GN=RH8 PE=2 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.805e-31
Identity = 68/173 (39.31%), Postives = 110/173 (63.58%), Query Frame = 3
Query:  147 TEGVEAI--TSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVVLAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQI 659
            TE V A     F+   +K +LL GIY+ GFE+PS IQ+ ++   + GRD++A+A++GTGKT+   + V + +D  +  +QA+I+ PTRELA QT +V   +G  + IQ     GG S+ +DI +L   VH++ GTPGR+ D+ K+     +   +LV+DE+D++LS+ F+  +
Sbjct:  122 TEDVTATKGNEFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGRDILARAKNGTGKTAAFCIPVLEKIDQDNNVIQAVIIVPTRELALQTSQVCKELGKHLKIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLTKKGVCVLKDCSVLVMDEADKLLSQEFQPSV 294          
BLAST of FC868508 vs. ExPASy Swiss-Prot
Match: RH6_ARATH (DEAD-box ATP-dependent RNA helicase 6 OS=Arabidopsis thaliana GN=RH6 PE=2 SV=2)

HSP 1 Score: 135.961 bits (341), Expect = 1.805e-31
Identity = 69/179 (38.55%), Postives = 111/179 (62.01%), Query Frame = 3
Query:  147 TEGVEAI--TSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVVLAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRY 677
            TE V A     F+   +K DLLRGIY+ GFEKPS IQ+ ++   + G D++A+A++GTGKT    +   + +D  +  +QA+IL PTRELA QT +V   +  ++ I+     GG S+ +DI +L   VH++ GTPGR+ D+ K+     +   +LV+DE+D++LS  F+  I ++ ++
Sbjct:  145 TEDVTATKGNEFEDYFLKRDLLRGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGKTGAFCIPTLEKIDPENNVIQAVILVPTRELALQTSQVCKELSKYLKIEVMVTTGGTSLRDDIMRLYQPVHLLVGTPGRILDLAKKGVCVLKDCAMLVMDEADKLLSVEFQPSIEELIQF 323          
The following BLAST results are available for this feature:
BLAST of FC868508 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EXP9_STRPN4.749e-3240.74Probable ATP-dependent RNA helicase exp9 OS=Strept... [more]
CSHA_BACHK6.203e-3240.00DEAD-box ATP-dependent RNA helicase cshA OS=Bacill... [more]
CSHA_BACCZ6.203e-3240.00DEAD-box ATP-dependent RNA helicase cshA OS=Bacill... [more]
CSHA_BACCR6.203e-3240.00DEAD-box ATP-dependent RNA helicase cshA OS=Bacill... [more]
CSHA_BACC16.203e-3240.00DEAD-box ATP-dependent RNA helicase cshA OS=Bacill... [more]
CSHA_BACAN6.203e-3240.00DEAD-box ATP-dependent RNA helicase cshA OS=Bacill... [more]
CSHA_BACAH6.203e-3240.00DEAD-box ATP-dependent RNA helicase cshA OS=Bacill... [more]
DDX6_DICDI8.101e-3237.99Probable ATP-dependent RNA helicase ddx6 OS=Dictyo... [more]
RH8_ARATH1.805e-3139.31DEAD-box ATP-dependent RNA helicase 8 OS=Arabidops... [more]
RH6_ARATH1.805e-3138.55DEAD-box ATP-dependent RNA helicase 6 OS=Arabidops... [more]

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Properties
Property NameValue
Genbank descriptionC31001C05EF AbioticL1 Citrus clementina cDNA clone C31001C05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868508 ID=FC868508; Name=FC868508; organism=Citrus clementina; type=EST; length=677bp
GCTCACCTGGAAGAGGAAACTCTCATTGATTCTTTGATTTCGAAGAGTAA
TTGTTGCGAATTTCGTGCGAGATGGCGGCGGCGACGGCTATGCGGAGGAG
AGGAGGGGGCGGCGGAATGGATGACGACAAGATGGTGTTCGAAACAACGG
AAGGAGTGGAGGCAATCACGAGCTTCGACGCAATGGGAATAAAAGACGAT
CTGTTGCGTGGAATTTATCAGTACGGATTCGAGAAGCCATCGGCCATACA
ACAGAGGGCCGTTATGCCGATTATAAAGGGCCGTGATGTAATTGCACAGG
CCCAGTCTGGTACTGGCAAGACCTCTATGATTGCCCTAACTGTTTGCCAG
ACGGTCGATACTTCTAGCAGAGAGGTGCAGGCGTTGATTTTGTCACCTAC
GAGGGAGCTGGCGACGCAGACAGAGAAAGTGGTTTTGGCAATTGGTGATT
TTATTAACATACAAGCACATGCGTGTGTTGGAGGCAAAAGTGTCGGGGAA
GATATTAGGAAGTTAGAGCATGGAGTTCATGTGGTGTCTGGAACTCCGGG
TAGAGTCTGTGATATGATTAAGAGGAAAACTTTGCGTACTAGAGCTATTA
AATTATTGGTGCTTGATGAGTCTGATGAGATGCTGAGCAGAGGGTTCAAG
GATCAAATTTATGATGTGTACCGTTAT
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