FC868508

Overview
NameFC868508
Unique NameFC868508
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length677
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868508 vs. ExPASy Swiss-Prot
Match: RH6_ORYSJ (DEAD-box ATP-dependent RNA helicase 6 OS=Oryza sativa subsp. japonica GN=Os04g0533000 PE=2 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 3.079e-31
Identity = 69/179 (38.55%), Postives = 109/179 (60.89%), Query Frame = 3
Query:  147 TEGVEAI--TSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVVLAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRY 677
            TE V A     F+   +K +LL GIY+ GFE+PS IQ+ ++   + G D++A+A++GTGKT+   +   + +D     +Q +IL PTRELA QT +V   +G  + IQ     GG S+ +DI +L   VH++ GTPGR+ D+ K+     +   +LV+DE+D++LS  F+  I ++ RY
Sbjct:  115 TEDVTATKGNEFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDKNAIQVVILVPTRELALQTSQVCKELGKHLKIQVMVTTGGTSLKDDIVRLYQPVHLLVGTPGRILDLTKKGVCVLKNCSMLVMDEADKLLSPEFQPSIQELIRY 293          
BLAST of FC868508 vs. ExPASy Swiss-Prot
Match: DHH1_ASHGO (ATP-dependent RNA helicase DHH1 OS=Ashbya gossypii GN=DHH1 PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 3.079e-31
Identity = 67/169 (39.64%), Postives = 103/169 (60.95%), Query Frame = 3
Query:  171 SFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVVLAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRY 677
            +F+   ++ +LL GI++ GFE+PS IQ+ A+   +  RD++A+A++GTGKT+   +   + V     ++QALI+ PTRELA QT +VV  +G    I      GG ++ +DI +L   VHV+ GTPGRV D+  RK        L V+DE+D+MLSR FK  +  +  +
Sbjct:   30 TFEDFYLRRELLMGIFEAGFERPSPIQEEAIPIALARRDILARAKNGTGKTAAFVIPTLEIVKPKVNKIQALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDIMRLNEPVHVLVGTPGRVLDLASRKVADLSECSLFVMDEADKMLSRDFKSLVEQILSF 198          
BLAST of FC868508 vs. ExPASy Swiss-Prot
Match: DHH1_MAGGR (ATP-dependent RNA helicase DHH1 OS=Magnaporthe grisea GN=DHH1 PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 6.858e-31
Identity = 66/177 (37.29%), Postives = 109/177 (61.58%), Query Frame = 3
Query:  147 TEGVEAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVVLAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRY 677
            T+G+E    F+  G+K DLL GI++ GFEKPS IQ+ ++   + GRD++A+A++GTGKT+   +   +T++    ++Q LIL PTRELA QT +V   +G  + I      GG ++ +DI +L+  VH+V GTPGR+ D+  +         + ++DE+D++LS  F   I  + ++
Sbjct:   33 TKGLE----FENFGLKRDLLMGIFEAGFEKPSPIQEESIPVALTGRDILARAKNGTGKTAAFVVPALETINPKVSKIQCLILVPTRELAMQTSQVCKTLGKHLGINVMVTTGGTTLRDDILRLQDPVHIVVGTPGRILDLAGKNVADLSECPMFIMDEADKLLSIEFTPVIEQLLQF 205          
BLAST of FC868508 vs. ExPASy Swiss-Prot
Match: RH8_ORYSJ (DEAD-box ATP-dependent RNA helicase 8 OS=Oryza sativa subsp. japonica GN=Os02g0641800 PE=2 SV=2)

HSP 1 Score: 132.88 bits (333), Expect = 1.528e-30
Identity = 67/179 (37.43%), Postives = 108/179 (60.34%), Query Frame = 3
Query:  147 TEGVEAI--TSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVVLAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRY 677
            TE V A     F+   +K +LL GIY+ GFE+PS IQ+ ++   + G D++A+A++GTGKT+   +   + +D     +Q +IL PTRELA QT +V   +G  + IQ     GG S+ +DI +L   VH++ GTPGR+ D+ K+     +   +L++DE+D++LS  F+  +  + RY
Sbjct:  125 TEDVTATKGNEFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQEKNAIQVVILVPTRELALQTSQVCKELGKHLKIQVMVTTGGTSLKDDIIRLYQPVHLLVGTPGRILDLTKKGICILKDCSMLIMDEADKLLSPEFQPSVEQLIRY 303          
BLAST of FC868508 vs. ExPASy Swiss-Prot
Match: RH12_ORYSJ (DEAD-box ATP-dependent RNA helicase 12 OS=Oryza sativa subsp. japonica GN=Os10g0503700 PE=2 SV=2)

HSP 1 Score: 132.494 bits (332), Expect = 1.995e-30
Identity = 66/179 (36.87%), Postives = 109/179 (60.89%), Query Frame = 3
Query:  147 TEGVEAI--TSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVVLAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRY 677
            TE V A     F+   +K +LL GIY+ GFE+PS IQ+ ++   + G D++A+A++GTGKT+   +   + +D     +Q +IL PTRELA QT +V   +G ++NIQ     GG S+ +DI +L   VH++ GTPGR+ D+ ++     +   +LV+DE+D++L+  F+  I  +  +
Sbjct:  138 TEDVTATKGNEFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDPEKNAIQVVILVPTRELALQTSQVCKELGKYLNIQVMVSTGGTSLKDDIMRLYQPVHLLVGTPGRILDLTRKGICVLKDCSMLVMDEADKLLAPEFQPSIEQLIHF 316          
BLAST of FC868508 vs. ExPASy Swiss-Prot
Match: DHH1_YARLI (ATP-dependent RNA helicase DHH1 OS=Yarrowia lipolytica GN=DHH1 PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 3.404e-30
Identity = 70/179 (39.11%), Postives = 107/179 (59.78%), Query Frame = 3
Query:  147 TEGVEAI--TSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVVLAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRY 677
            TE V A   T F+   +K +LL GI++ GFE PS IQ+ A+   + GRD++A+A++GTGKT+   +   Q V+    ++QALI+ PTRELA QT +V   +G  + I+     GG ++ +DI +LE  VHV+ GTPGRV D+  +         + ++DE+D++LS  F   I  V  +
Sbjct:   19 TEDVTATKGTGFEDFFLKRELLMGIFEAGFENPSPIQEEAIPIALAGRDILARAKNGTGKTAAFVIPALQQVNPKVNKIQALIMVPTRELALQTSQVCKTLGKHLGIKVMVTTGGTNLRDDIMRLEDTVHVLVGTPGRVLDLAGKGVADLSESPMFIMDEADKLLSPDFTPIIEQVLHF 197          
BLAST of FC868508 vs. ExPASy Swiss-Prot
Match: DHH1_CHAGB (ATP-dependent RNA helicase DHH1 OS=Chaetomium globosum GN=DHH1 PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 3.404e-30
Identity = 63/168 (37.50%), Postives = 103/168 (61.31%), Query Frame = 3
Query:  174 FDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVVLAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRY 677
            F+  G+K DLL GI++ GFEKPS IQ+ ++   + GRD++A+A++GTGKT+   +   + ++    ++Q LIL PTRELA QT +V   +G  + I      GG  + +DI +L+  VH+V GTPGR+ D+  ++        + ++DE+D++LS  F   I  + R+
Sbjct:   13 FEDFGLKRDLLMGIFEAGFEKPSPIQEESIPVALVGRDILARAKNGTGKTAAFVIPALEKINPKVSKIQCLILVPTRELAMQTSQVCKTLGKHLGINVMVTTGGTGLRDDIVRLQDPVHIVVGTPGRILDLAGKQVADLSECPMFIMDEADKLLSIEFTPVIEQLLRF 180          
BLAST of FC868508 vs. ExPASy Swiss-Prot
Match: DHH1_BOTFB (ATP-dependent RNA helicase dhh1 OS=Botryotinia fuckeliana (strain B05.10) GN=dhh1 PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 3.404e-30
Identity = 64/167 (38.32%), Postives = 104/167 (62.28%), Query Frame = 3
Query:  147 TEGVEAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVVLAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGF 647
            T+G+E    F+   IK +LL GI++ G+EKPS IQ+ A+   + GRD++A+A++GTGKT+   +   + ++  + +VQ LIL PTRELA QT +V   +G  + I      GG ++ +DI +L+  VH++ GTPGR+ D+  +         + V+DE+D++LS  F
Sbjct:   44 TKGLE----FEDFSIKRELLMGIFEMGYEKPSPIQEEAIPVALTGRDILARAKNGTGKTAAFVIPALERINPKNTKVQCLILVPTRELALQTSQVCKTLGQHLGINVMVTTGGTTLRDDILRLQEPVHIIVGTPGRILDLAGKNVADLSECNMFVMDEADKLLSPEF 206          
BLAST of FC868508 vs. ExPASy Swiss-Prot
Match: DHH1_CRYNV (ATP-dependent RNA helicase VAD1 OS=Cryptococcus neoformans var. grubii GN=VAD1 PE=2 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 4.445e-30
Identity = 69/170 (40.59%), Postives = 107/170 (62.94%), Query Frame = 3
Query:  147 TEGVEAI--TSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVVLAIGDFI-NIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGF 647
            TE V A   + F+  G++ +LL GIY  GFE+PS IQ++A+   + GRD++A+A++GTGKT+   +     ++TS   +QALIL PTRELA QT +V   +G  I N+Q     GG ++ +DI +L+  VH++ GTPGR+ D+  +         + V+DE+D++LS  F
Sbjct:   27 TEDVTATQGSRFEDFGLRRELLMGIYTAGFERPSPIQEQAIPMALTGRDILARAKNGTGKTASFIIPTLNRINTSLSHIQALILVPTRELALQTSQVCKTLGAHIPNLQVMITTGGTTLRDDILRLQQPVHILVGTPGRILDLGSKGIAGLNKCGIFVMDEADKLLSEDF 196          
BLAST of FC868508 vs. ExPASy Swiss-Prot
Match: DHH1_CRYNE (ATP-dependent RNA helicase DHH1 OS=Cryptococcus neoformans GN=DHH1 PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 4.445e-30
Identity = 69/170 (40.59%), Postives = 107/170 (62.94%), Query Frame = 3
Query:  147 TEGVEAI--TSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVVLAIGDFI-NIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGF 647
            TE V A   + F+  G++ +LL GIY  GFE+PS IQ++A+   + GRD++A+A++GTGKT+   +     ++TS   +QALIL PTRELA QT +V   +G  I N+Q     GG ++ +DI +L+  VH++ GTPGR+ D+  +         + V+DE+D++LS  F
Sbjct:   27 TEDVTATQGSRFEDFGLRRELLMGIYTAGFERPSPIQEQAIPMALTGRDILARAKNGTGKTASFIIPTLNRINTSLSHIQALILVPTRELALQTSQVCKTLGAHIPNLQVMITTGGTTLRDDILRLQQPVHILVGTPGRILDLGSKGIASLNKCGVFVMDEADKLLSEDF 196          
The following BLAST results are available for this feature:
BLAST of FC868508 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RH6_ORYSJ3.079e-3138.55DEAD-box ATP-dependent RNA helicase 6 OS=Oryza sat... [more]
DHH1_ASHGO3.079e-3139.64ATP-dependent RNA helicase DHH1 OS=Ashbya gossypii... [more]
DHH1_MAGGR6.858e-3137.29ATP-dependent RNA helicase DHH1 OS=Magnaporthe gri... [more]
RH8_ORYSJ1.528e-3037.43DEAD-box ATP-dependent RNA helicase 8 OS=Oryza sat... [more]
RH12_ORYSJ1.995e-3036.87DEAD-box ATP-dependent RNA helicase 12 OS=Oryza sa... [more]
DHH1_YARLI3.404e-3039.11ATP-dependent RNA helicase DHH1 OS=Yarrowia lipoly... [more]
DHH1_CHAGB3.404e-3037.50ATP-dependent RNA helicase DHH1 OS=Chaetomium glob... [more]
DHH1_BOTFB3.404e-3038.32ATP-dependent RNA helicase dhh1 OS=Botryotinia fuc... [more]
DHH1_CRYNV4.445e-3040.59ATP-dependent RNA helicase VAD1 OS=Cryptococcus ne... [more]
DHH1_CRYNE4.445e-3040.59ATP-dependent RNA helicase DHH1 OS=Cryptococcus ne... [more]

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Properties
Property NameValue
Genbank descriptionC31001C05EF AbioticL1 Citrus clementina cDNA clone C31001C05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868508 ID=FC868508; Name=FC868508; organism=Citrus clementina; type=EST; length=677bp
GCTCACCTGGAAGAGGAAACTCTCATTGATTCTTTGATTTCGAAGAGTAA
TTGTTGCGAATTTCGTGCGAGATGGCGGCGGCGACGGCTATGCGGAGGAG
AGGAGGGGGCGGCGGAATGGATGACGACAAGATGGTGTTCGAAACAACGG
AAGGAGTGGAGGCAATCACGAGCTTCGACGCAATGGGAATAAAAGACGAT
CTGTTGCGTGGAATTTATCAGTACGGATTCGAGAAGCCATCGGCCATACA
ACAGAGGGCCGTTATGCCGATTATAAAGGGCCGTGATGTAATTGCACAGG
CCCAGTCTGGTACTGGCAAGACCTCTATGATTGCCCTAACTGTTTGCCAG
ACGGTCGATACTTCTAGCAGAGAGGTGCAGGCGTTGATTTTGTCACCTAC
GAGGGAGCTGGCGACGCAGACAGAGAAAGTGGTTTTGGCAATTGGTGATT
TTATTAACATACAAGCACATGCGTGTGTTGGAGGCAAAAGTGTCGGGGAA
GATATTAGGAAGTTAGAGCATGGAGTTCATGTGGTGTCTGGAACTCCGGG
TAGAGTCTGTGATATGATTAAGAGGAAAACTTTGCGTACTAGAGCTATTA
AATTATTGGTGCTTGATGAGTCTGATGAGATGCTGAGCAGAGGGTTCAAG
GATCAAATTTATGATGTGTACCGTTAT
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