FC868508

Overview
NameFC868508
Unique NameFC868508
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length677
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868508 vs. ExPASy Swiss-Prot
Match: DBP10_YARLI (ATP-dependent RNA helicase DBP10 OS=Yarrowia lipolytica GN=DBP10 PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.170e-20
Identity = 52/174 (29.89%), Postives = 100/174 (57.47%), Query Frame = 3
Query:  153 GVEAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREV--QALILSPTRELATQTEKVVLAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDV 668
            G ++  SF  +G+   +L+ I + GF++P+ IQ++ +  +++G+DV+  A++G+GKT+   L + + +   S +V  +A+ILSP+RELA QT KVV       +++    VGG S+ E  + +     ++  TPGR   +     L   +++ +  DE+D +   GF +Q+ ++
Sbjct:   97 GKKSSGSFAGLGLSQLVLKNIARKGFKQPTPIQRKTIPLVLEGKDVVGMARTGSGKTAAFVLPMLEKLKVHSAKVGARAVILSPSRELALQTLKVVKDFSAGTDLRLAMLVGGDSLEEQFKMMMSNPDIIIATPGRFLHLKVEMELSLASVEYICFDEADRLFELGFGEQMNEL 270          
BLAST of FC868508 vs. ExPASy Swiss-Prot
Match: DBP10_SCLS1 (ATP-dependent RNA helicase dbp10 OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) GN=dbp10 PE=3 SV=2)

HSP 1 Score: 98.2117 bits (243), Expect = 4.170e-20
Identity = 55/167 (32.93%), Postives = 93/167 (55.69%), Query Frame = 3
Query:  174 FDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREV--QALILSPTRELATQTEKVVLAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDV 668
            F AMG+   LL+ I + GF  P+ IQ++ +  ++  +DV+  A++G+GKT+   + + + +   S  V  +ALI+SP+RELA QT KVV   G   +++    VGG S+ E    +     +V  TPGR   +    +L   ++K +V DE+D +   GF  Q+ ++
Sbjct:   90 FQAMGLNSHLLKAISRKGFNVPTPIQRKTIPLVLDNQDVVGMARTGSGKTAAFVIPMIEKLRAHSVRVGARALIMSPSRELALQTLKVVKEFGRGTDLKCVLLVGGDSLEEQFGFMAANPDIVIATPGRFLHLKVEMSLDLSSMKYVVFDEADRLFEMGFAAQLGEI 256          
BLAST of FC868508 vs. ExPASy Swiss-Prot
Match: DBP10_CANAL (ATP-dependent RNA helicase DBP10 OS=Candida albicans GN=DBP10 PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.170e-20
Identity = 55/169 (32.54%), Postives = 97/169 (57.40%), Query Frame = 3
Query:  171 SFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSRE---VQALILSPTRELATQTEKVVLAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDV 668
            SF + G+   +L  I + G+++P+ IQ++ +  I++GRDV+  A++G+GKT+   L + + +   SR+   V+A+ILSP+RELA QT K V       N+Q+   +GG S+ ED  K+     ++  TPGR   +          ++ +V DE+D +   GF +Q+ ++
Sbjct:  100 SFASFGLTKFILANIAKKGYKQPTPIQRKTIPLIMEGRDVVGMARTGSGKTAAFVLPLIERL--KSRQPGGVRAVILSPSRELALQTYKQVKEFSHGTNLQSIVLIGGDSLEEDFSKMMTKPDIIVCTPGRFLHLKVEMQYDLMTVQYIVFDEADRLFEMGFAEQLNEL 266          
BLAST of FC868508 vs. ExPASy Swiss-Prot
Match: DBP10_AJECN (ATP-dependent RNA helicase DBP10 OS=Ajellomyces capsulata (strain NAm1 / WU24) GN=DBP10 PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.170e-20
Identity = 52/167 (31.14%), Postives = 96/167 (57.49%), Query Frame = 3
Query:  174 FDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREV--QALILSPTRELATQTEKVVLAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDV 668
            F ++G+   LL+ I + GF  P+ IQ++ +  ++  +DV+  A++G+GKT+   + + + + + S +   +ALILSP+RELA QT KVV  +G   ++++   VGG S+ E    +     ++  TPGR   +    +L   +I+ +V DE+D +   GF  Q+ ++
Sbjct:   88 FQSLGLNAALLKAITRKGFSVPTPIQRKTIPLVLDDQDVVGMARTGSGKTAAFVIPMIEKLKSHSAKFGSRALILSPSRELALQTLKVVKELGRGTDLKSVLLVGGDSLEEQFEYMASNPDIIIATPGRFLHLKVEMSLDLSSIRYVVFDEADRLFEMGFATQLTEI 254          
BLAST of FC868508 vs. ExPASy Swiss-Prot
Match: RH53_ORYSJ (DEAD-box ATP-dependent RNA helicase 53 OS=Oryza sativa subsp. japonica GN=Os07g0143700 PE=2 SV=2)

HSP 1 Score: 97.8265 bits (242), Expect = 5.447e-20
Identity = 55/165 (33.33%), Postives = 92/165 (55.76%), Query Frame = 3
Query:  183 MGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTV------DTSSREVQALILSPTRELATQTEKVVLAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQI 659
            +GI   ++  +   G  +   IQ+  + P ++G+D+I +A++GTGKT    + +   +      + S R   A+IL+PTRELA Q EK      +   + +    GG  +   +R L +GV VV GTPGR+ D+++R  L    I+ +VLDE+D+ML+ GF + +
Sbjct:   89 LGISPWIVERLAARGITRLFPIQRAVLDPAMQGKDMIGRARTGTGKTLAFGIPIMDRILRHNEKNGSGRNPLAIILAPTRELARQVEK---EFKESAPLDSLCVYGGVPISHQMRALNYGVDVVVGTPGRIIDLLRRGVLNLSEIQFVVLDEADQMLAVGFDEDV 250          
BLAST of FC868508 vs. ExPASy Swiss-Prot
Match: RH52B_ORYSJ (DEAD-box ATP-dependent RNA helicase 52B OS=Oryza sativa subsp. japonica GN=PL10B PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 5.447e-20
Identity = 59/173 (34.10%), Postives = 93/173 (53.76%), Query Frame = 3
Query:  171 SFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTS--------SREVQ--ALILSPTRELATQTEKVVLAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQI 659
            +F  + + D L   I +  + KP+ +Q+ A+   I GRD++A AQ+G+GKT+     +   +  S        SR     ALILSPTREL+ Q  +          ++     GG  + + +R+LE GV ++  TPGR+ D+++R  +  + IK L LDE+D ML  GF+ QI
Sbjct:  170 TFAEIDLGDALNENIRRCKYVKPTPVQRYAIPISIAGRDLMACAQTGSGKTAAFCFPIISGIMRSRPPPRSRGSRTAYPLALILSPTRELSVQIHEEARKFAYQTGVKVVVAYGGAPITQQLRELERGVEILVATPGRLMDLLERARVSLQMIKYLALDEADRMLDMGFEPQI 342          
BLAST of FC868508 vs. ExPASy Swiss-Prot
Match: DBP5_COCIM (ATP-dependent RNA helicase DBP5 OS=Coccidioides immitis GN=DBP5 PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 5.447e-20
Identity = 61/172 (35.47%), Postives = 101/172 (58.72%), Query Frame = 3
Query:  162 AITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGR---DVIAQAQSGTGKTSMIALTVCQTVDTS---SREVQALILSPTRELATQTEKVVLAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEML-SRGFKDQ 656
            +I SF+ +G+ + +  G+ +  F +PS IQ+RA +P++      ++IAQ+QSGTGKT+   L +   ++ +    +  QAL+L+P+RELA Q   V+ A+G F+     A      +  + R       +V GTPG V D+IK++   T+ +++LVLDE+D ML  +G  DQ
Sbjct:   90 SIKSFEELGLAEPIQMGLSKMNFRRPSKIQERA-LPLLMANPPTNMIAQSQSGTGKTAAFVLNILSRLELTPEKQKSPQALVLAPSRELARQIVGVIQAMGTFVEGLFVATAVPMEMNRNQRV---EASIVVGTPGTVQDLIKKRLFNTQHLRVLVLDEADNMLDQQGLGDQ 257          
BLAST of FC868508 vs. ExPASy Swiss-Prot
Match: DBP2_NEUCR (ATP-dependent RNA helicase dbp-2 OS=Neurospora crassa GN=dbp-2 PE=3 SV=2)

HSP 1 Score: 97.8265 bits (242), Expect = 5.447e-20
Identity = 63/174 (36.21%), Postives = 90/174 (51.72%), Query Frame = 3
Query:  165 ITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVC--QTVDTSSREVQA-------LILSPTRELATQTEKVVLAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQI 659
            + +FD  G    ++  +   GF  P+AIQ +     + GRDV+  A++G+GKT    LT C    V  +++ + A       LIL+PTRELA Q ++ +   G    I+     GG   G  IR L  GV V   TPGR+ DM++      R +  LVLDE+D ML  GF+ QI
Sbjct:  131 VETFDEAGFPRYVMDEVKAQGFPAPTAIQSQGWPMALSGRDVVGIAETGSGKT----LTYCLPAIVHINAQPLLAPGDGPIVLILAPTRELAVQIQQEISKFGKSSRIRNTCVYGGVPKGPQIRDLSRGVEVCIATPGRLIDMLESGKTNLRRVTYLVLDEADRMLDMGFEPQI 300          
BLAST of FC868508 vs. ExPASy Swiss-Prot
Match: DBP2_MAGGR (ATP-dependent RNA helicase DBP2 OS=Magnaporthe grisea GN=DBP2 PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 5.447e-20
Identity = 64/185 (34.59%), Postives = 94/185 (50.81%), Query Frame = 3
Query:  132 MVFETTEGVEAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVC--QTVDTSSREVQA-------LILSPTRELATQTEKVVLAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQI 659
            M  + ++  + + +FD  G    ++  +   GF  P+AIQ +     + GRDV+  A++G+GKT    LT C    V  +++ + A       LIL+PTRELA Q +  +   G    I+     GG   G  IR L  GV V   TPGR+ DM++      R +  LVLDE+D ML  GF+ QI
Sbjct:  113 MAVQGSDVPKPVETFDEAGFPRYVMDEVKAQGFPAPTAIQSQGWPMALSGRDVVGIAETGSGKT----LTYCLPAIVHINAQPLLAPGDGPIVLILAPTRELAVQIQAEISKFGKSSRIRNTCVYGGVPKGPQIRDLSRGVEVCIATPGRLIDMLESGKTNLRRVTYLVLDEADRMLDMGFEPQI 293          
BLAST of FC868508 vs. ExPASy Swiss-Prot
Match: DBP2_ENCCU (ATP-dependent RNA helicase DBP2 OS=Encephalitozoon cuniculi GN=DBP2 PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 5.447e-20
Identity = 61/182 (33.52%), Postives = 92/182 (50.55%), Query Frame = 3
Query:  129 KMVFETTEGVEAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKT-SMIALTVCQTVDTSSREVQ----ALILSPTRELATQTEKVVLAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQI 659
            +M+ + T     I  F+  G   +++  + + GF +P+AIQ +     + GRD++  AQ+G+GKT S I   +    D            L+L+PTREL  Q +KVV       N+++ A  GG S    IR L  G  VV  TPGR+ D+  +       +  LVLDE+D ML  GF+ Q+
Sbjct:   74 EMIVKGTNVPHPIQKFEEAGFSSEVVSSLVEKGFSEPTAIQGQGWPMALSGRDMVGIAQTGSGKTLSFILPALVHAKDQQPLRRGDGPIVLVLAPTRELVMQIKKVVDEFCGMFNLRSTAVYGGASSQPQIRALHEGAEVVIATPGRLIDLHDQGHAPLSRVTFLVLDEADRMLDMGFEPQL 255          
The following BLAST results are available for this feature:
BLAST of FC868508 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DBP10_YARLI4.170e-2029.89ATP-dependent RNA helicase DBP10 OS=Yarrowia lipol... [more]
DBP10_SCLS14.170e-2032.93ATP-dependent RNA helicase dbp10 OS=Sclerotinia sc... [more]
DBP10_CANAL4.170e-2032.54ATP-dependent RNA helicase DBP10 OS=Candida albica... [more]
DBP10_AJECN4.170e-2031.14ATP-dependent RNA helicase DBP10 OS=Ajellomyces ca... [more]
RH53_ORYSJ5.447e-2033.33DEAD-box ATP-dependent RNA helicase 53 OS=Oryza sa... [more]
RH52B_ORYSJ5.447e-2034.10DEAD-box ATP-dependent RNA helicase 52B OS=Oryza s... [more]
DBP5_COCIM5.447e-2035.47ATP-dependent RNA helicase DBP5 OS=Coccidioides im... [more]
DBP2_NEUCR5.447e-2036.21ATP-dependent RNA helicase dbp-2 OS=Neurospora cra... [more]
DBP2_MAGGR5.447e-2034.59ATP-dependent RNA helicase DBP2 OS=Magnaporthe gri... [more]
DBP2_ENCCU5.447e-2033.52ATP-dependent RNA helicase DBP2 OS=Encephalitozoon... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC31001C05EF AbioticL1 Citrus clementina cDNA clone C31001C05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868508 ID=FC868508; Name=FC868508; organism=Citrus clementina; type=EST; length=677bp
GCTCACCTGGAAGAGGAAACTCTCATTGATTCTTTGATTTCGAAGAGTAA
TTGTTGCGAATTTCGTGCGAGATGGCGGCGGCGACGGCTATGCGGAGGAG
AGGAGGGGGCGGCGGAATGGATGACGACAAGATGGTGTTCGAAACAACGG
AAGGAGTGGAGGCAATCACGAGCTTCGACGCAATGGGAATAAAAGACGAT
CTGTTGCGTGGAATTTATCAGTACGGATTCGAGAAGCCATCGGCCATACA
ACAGAGGGCCGTTATGCCGATTATAAAGGGCCGTGATGTAATTGCACAGG
CCCAGTCTGGTACTGGCAAGACCTCTATGATTGCCCTAACTGTTTGCCAG
ACGGTCGATACTTCTAGCAGAGAGGTGCAGGCGTTGATTTTGTCACCTAC
GAGGGAGCTGGCGACGCAGACAGAGAAAGTGGTTTTGGCAATTGGTGATT
TTATTAACATACAAGCACATGCGTGTGTTGGAGGCAAAAGTGTCGGGGAA
GATATTAGGAAGTTAGAGCATGGAGTTCATGTGGTGTCTGGAACTCCGGG
TAGAGTCTGTGATATGATTAAGAGGAAAACTTTGCGTACTAGAGCTATTA
AATTATTGGTGCTTGATGAGTCTGATGAGATGCTGAGCAGAGGGTTCAAG
GATCAAATTTATGATGTGTACCGTTAT
back to top