FC868508

Overview
NameFC868508
Unique NameFC868508
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length677
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13756 contig Ccv1_Contig13756:35..711. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC868508 vs. ExPASy Swiss-Prot
Match: IF4A_MAGGR (ATP-dependent RNA helicase eIF4A OS=Magnaporthe grisea GN=TIF1 PE=3 SV=1)

HSP 1 Score: 230.72 bits (587), Expect = 5.384e-60
Identity = 109/172 (63.37%), Postives = 143/172 (83.14%), Query Frame = 3
Query:  159 EAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVVLAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYR 674
            E + SFD M +K +LLRGIY YGFE+PSAIQQRA+MP+IKG DVIAQAQSGTGKT+  +++V Q +DT+ ++ QALIL+PTRELA Q +KVV+AIGDF+NI+ HAC+GG SV +D++ L+ G  VV GTPGRV DMI+R+ L+T  +K+ VLDE+DEMLSRGF +QIYD+++
Sbjct:   20 ETVDSFDEMNLKSELLRGIYAYGFERPSAIQQRAIMPVIKGHDVIAQAQSGTGKTATFSISVLQKIDTNVKQCQALILAPTRELAQQIQKVVVAIGDFMNIECHACIGGTSVRDDMKALQDGPQVVVGTPGRVHDMIQRRFLKTDGMKMFVLDEADEMLSRGFTEQIYDIFQ 191          
BLAST of FC868508 vs. ExPASy Swiss-Prot
Match: IF4A_YARLI (ATP-dependent RNA helicase eIF4A OS=Yarrowia lipolytica GN=TIF1 PE=3 SV=1)

HSP 1 Score: 229.18 bits (583), Expect = 1.566e-59
Identity = 106/176 (60.23%), Postives = 142/176 (80.68%), Query Frame = 3
Query:  144 TTEGVEAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVVLAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVY 671
            TT   E +TSFD +G+KD+LLRGIY YGFE PS+IQQRA++P+IKG DV+AQAQSGTGKT+  +++  Q +D   ++ QALI++PTRELA Q +KVVLA G+++ I+ HAC+GG SV EDIR ++ GVHV+ GTPGR+ DMI+R+ L+T  IK+ +LDE+DEMLSR FKD IYD++
Sbjct:   14 TTNYDEVVTSFDDLGLKDELLRGIYGYGFENPSSIQQRAILPVIKGNDVLAQAQSGTGKTATFSISALQNIDEKIKKPQALIIAPTRELAHQIQKVVLAFGEYMKIECHACIGGTSVAEDIRVIQEGVHVIVGTPGRIHDMIERRILKTDLIKMFILDEADEMLSREFKDPIYDIF 189          
BLAST of FC868508 vs. ExPASy Swiss-Prot
Match: IF4A_NEUCR (ATP-dependent RNA helicase eIF4A OS=Neurospora crassa GN=tif-1 PE=3 SV=2)

HSP 1 Score: 228.409 bits (581), Expect = 2.672e-59
Identity = 109/172 (63.37%), Postives = 142/172 (82.56%), Query Frame = 3
Query:  159 EAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVVLAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYR 674
            E + SFD M +K +LLRGIY YGFE+PSAIQQRA+MP+IKG DVIAQAQSGTGKT+  +++V Q +D S +  QALIL+PTRELA Q +KVV+AIGDF+NI+ HAC+GG SV +D++ L+ G  VV GTPGRV DMI+R+ L+T ++K+ VLDE+DEMLSRGF +QIYD+++
Sbjct:   21 ETVDSFDEMNLKPELLRGIYAYGFERPSAIQQRAIMPVIKGHDVIAQAQSGTGKTATFSISVLQKIDPSLKACQALILAPTRELAQQIQKVVVAIGDFMNIECHACIGGTSVRDDMKALQDGPQVVVGTPGRVHDMIQRRFLKTDSMKMFVLDEADEMLSRGFTEQIYDIFQ 192          
BLAST of FC868508 vs. ExPASy Swiss-Prot
Match: FAL1_DEBHA (ATP-dependent RNA helicase FAL1 OS=Debaryomyces hansenii GN=FAL1 PE=3 SV=1)

HSP 1 Score: 228.024 bits (580), Expect = 3.490e-59
Identity = 103/179 (57.54%), Postives = 144/179 (80.45%), Query Frame = 3
Query:  141 ETTEGVEAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVVLAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRY 677
            ++T+ ++   +F++M +K DLL+GIY YGFE PSAIQ RA+M II G+D IAQAQSGTGKT+  ++ + + +DT S++ QALILSPTRELA Q + VV  +GD++N+  HAC+GG  VGEDI+KL+ G  +VSGTPGRV DMIKR+ L TR IK+++LDE+DE++++GFK+QIY++YRY
Sbjct:   17 KSTKNIKVHATFESMNLKTDLLKGIYGYGFEAPSAIQSRAIMQIISGKDTIAQAQSGTGKTATFSIGMLEVIDTKSKDCQALILSPTRELAQQIQSVVKHLGDYMNVHTHACIGGTHVGEDIKKLQQGQQIVSGTPGRVVDMIKRRNLATRNIKMMILDEADELMTKGFKEQIYEIYRY 195          
BLAST of FC868508 vs. ExPASy Swiss-Prot
Match: IF4A_SCLS1 (ATP-dependent RNA helicase eIF4A OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) GN=tif1 PE=3 SV=1)

HSP 1 Score: 227.254 bits (578), Expect = 5.953e-59
Identity = 106/172 (61.63%), Postives = 143/172 (83.14%), Query Frame = 3
Query:  159 EAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVVLAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYR 674
            E + SFD M +K +LLRG+Y YGFE+PSAIQQRA+MP+IKG DVIAQAQSGTGKT+  +++V Q +D + ++ QALIL+PTRELA Q +KVV+AIGDF+N++ HAC+GG SV +D++ L+ G  VV GTPGRV DMI+R+ L+T ++K+ VLDE+DEMLSRGF +QIYD+++
Sbjct:   22 ETVDSFDTMNLKPELLRGVYAYGFERPSAIQQRAIMPVIKGHDVIAQAQSGTGKTATFSISVLQKLDPNVKQCQALILAPTRELAQQIQKVVVAIGDFMNVECHACIGGTSVRDDMKALQDGPQVVVGTPGRVHDMIQRRFLKTDSMKMFVLDEADEMLSRGFTEQIYDIFQ 193          
BLAST of FC868508 vs. ExPASy Swiss-Prot
Match: IF4A_SCHPO (ATP-dependent RNA helicase eIF4A OS=Schizosaccharomyces pombe GN=tif1 PE=1 SV=2)

HSP 1 Score: 227.254 bits (578), Expect = 5.953e-59
Identity = 108/172 (62.79%), Postives = 142/172 (82.56%), Query Frame = 3
Query:  159 EAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVVLAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYR 674
            E I +FD M +K +LLRGIY YGFE+PSAIQQRA+MPI+  RDV+AQAQSGTGKT+  +++V Q +DTS ++ QALIL+PTRELA Q +KVV+A+GD +N++ HAC+GG  V +D+  L+ GVHVV GTPGRV DMI+R+ L T A+++ VLDE+DEMLSRGFKDQIYD+++
Sbjct:   16 EVIDTFDDMNLKPELLRGIYAYGFERPSAIQQRAIMPILGERDVLAQAQSGTGKTATFSISVLQKIDTSLKQCQALILAPTRELAQQIQKVVVALGDLMNVECHACIGGTLVRDDMAALQAGVHVVVGTPGRVHDMIQRRALPTDAVQMFVLDEADEMLSRGFKDQIYDIFQ 187          
BLAST of FC868508 vs. ExPASy Swiss-Prot
Match: IF4A_CHAGB (ATP-dependent RNA helicase eIF4A OS=Chaetomium globosum GN=TIF1 PE=3 SV=1)

HSP 1 Score: 227.254 bits (578), Expect = 5.953e-59
Identity = 107/172 (62.21%), Postives = 141/172 (81.98%), Query Frame = 3
Query:  159 EAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVVLAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYR 674
            E + SFD M +K +LLRGIY YGFE+PSAIQQRA+MP+IKG DVIAQAQSGTGKT+  +++V Q +D + +  QALIL+PTRELA Q +KVV+AIGDF+NI+ HAC+GG SV +D++ L+ G  V+ GTPGRV DMI+R+ L+T  +K+ VLDE+DEMLSRGF +QIYD+++
Sbjct:   21 ETVDSFDDMNLKSELLRGIYAYGFERPSAIQQRAIMPVIKGHDVIAQAQSGTGKTATFSISVLQKIDPTVKSCQALILAPTRELAQQIQKVVIAIGDFMNIECHACIGGTSVRDDMKALQDGPQVIVGTPGRVHDMIQRRILKTDQMKMFVLDEADEMLSRGFTEQIYDIFQ 192          
BLAST of FC868508 vs. ExPASy Swiss-Prot
Match: IF4A_BOTFB (ATP-dependent RNA helicase eIF4A OS=Botryotinia fuckeliana (strain B05.10) GN=tif1 PE=3 SV=1)

HSP 1 Score: 227.254 bits (578), Expect = 5.953e-59
Identity = 106/172 (61.63%), Postives = 143/172 (83.14%), Query Frame = 3
Query:  159 EAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVVLAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYR 674
            E + SFD M +K +LLRG+Y YGFE+PSAIQQRA+MP+IKG DVIAQAQSGTGKT+  +++V Q +D + ++ QALIL+PTRELA Q +KVV+AIGDF+N++ HAC+GG SV +D++ L+ G  VV GTPGRV DMI+R+ L+T ++K+ VLDE+DEMLSRGF +QIYD+++
Sbjct:   22 ETVDSFDTMNLKPELLRGVYAYGFERPSAIQQRAIMPVIKGHDVIAQAQSGTGKTATFSISVLQKLDPNVKQCQALILAPTRELAQQIQKVVVAIGDFMNVECHACIGGTSVRDDMKALQDGPQVVVGTPGRVHDMIQRRFLKTDSMKMFVLDEADEMLSRGFTEQIYDIFQ 193          
BLAST of FC868508 vs. ExPASy Swiss-Prot
Match: FAL1_PICST (ATP-dependent RNA helicase FAL1 OS=Pichia stipitis GN=FAL1 PE=3 SV=1)

HSP 1 Score: 227.254 bits (578), Expect = 5.953e-59
Identity = 105/179 (58.66%), Postives = 144/179 (80.45%), Query Frame = 3
Query:  141 ETTEGVEAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVVLAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRY 677
            ++T+ V+   +F++M +K DLL+GIY YGFE PSAIQ RA+M II GRD IAQAQSGTGKT+  ++ + Q +DT++++ QALILSPTRELA Q + VV  +GD++NI  HAC+GG  VG+DI+KL+ G  +VSGTPGRV DM+KR+ L TR IK+L+LDE+DE+ ++GFK+QIY+VY+Y
Sbjct:   17 KSTKNVKVHATFESMNLKPDLLKGIYGYGFEAPSAIQSRAIMQIINGRDTIAQAQSGTGKTATFSIGMLQAIDTNAKDCQALILSPTRELAVQIQNVVKHLGDYMNIHTHACIGGTHVGDDIKKLKQGQQIVSGTPGRVVDMVKRQQLSTRNIKMLILDEADELFTKGFKEQIYEVYKY 195          
BLAST of FC868508 vs. ExPASy Swiss-Prot
Match: FAL1_PICGU (ATP-dependent RNA helicase FAL1 OS=Pichia guilliermondii GN=FAL1 PE=3 SV=2)

HSP 1 Score: 227.254 bits (578), Expect = 5.953e-59
Identity = 100/178 (56.18%), Postives = 146/178 (82.02%), Query Frame = 3
Query:  141 ETTEGVEAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVVLAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYR 674
            ++T+ V+   +F++M +K +LL+GIY YGFE PSAIQ RA+M II+GRD IAQAQSGTGKT+  ++ +  ++DT S++ QAL+LSPTRELA Q E V+  +GD++N+++HAC+GG  VGED++KL+ G H++SGTPGRV DMIKR+ +  R +K+LVLDE+DE+L++GFK+QIY++Y+
Sbjct:   15 KSTKKVKIYPTFESMNLKPELLKGIYNYGFEAPSAIQSRAIMQIIRGRDTIAQAQSGTGKTATFSIGILSSIDTKSKDCQALVLSPTRELAQQIENVIEHLGDYMNVRSHACIGGTQVGEDVKKLQQGQHIISGTPGRVLDMIKRRNIMPRHVKMLVLDEADELLTKGFKEQIYEIYK 192          
The following BLAST results are available for this feature:
BLAST of FC868508 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
IF4A_MAGGR5.384e-6063.37ATP-dependent RNA helicase eIF4A OS=Magnaporthe gr... [more]
IF4A_YARLI1.566e-5960.23ATP-dependent RNA helicase eIF4A OS=Yarrowia lipol... [more]
IF4A_NEUCR2.672e-5963.37ATP-dependent RNA helicase eIF4A OS=Neurospora cra... [more]
FAL1_DEBHA3.490e-5957.54ATP-dependent RNA helicase FAL1 OS=Debaryomyces ha... [more]
IF4A_SCLS15.953e-5961.63ATP-dependent RNA helicase eIF4A OS=Sclerotinia sc... [more]
IF4A_SCHPO5.953e-5962.79ATP-dependent RNA helicase eIF4A OS=Schizosaccharo... [more]
IF4A_CHAGB5.953e-5962.21ATP-dependent RNA helicase eIF4A OS=Chaetomium glo... [more]
IF4A_BOTFB5.953e-5961.63ATP-dependent RNA helicase eIF4A OS=Botryotinia fu... [more]
FAL1_PICST5.953e-5958.66ATP-dependent RNA helicase FAL1 OS=Pichia stipitis... [more]
FAL1_PICGU5.953e-5956.18ATP-dependent RNA helicase FAL1 OS=Pichia guillier... [more]

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Properties
Property NameValue
Genbank descriptionC31001C05EF AbioticL1 Citrus clementina cDNA clone C31001C05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868508 ID=FC868508; Name=FC868508; organism=Citrus clementina; type=EST; length=677bp
GCTCACCTGGAAGAGGAAACTCTCATTGATTCTTTGATTTCGAAGAGTAA
TTGTTGCGAATTTCGTGCGAGATGGCGGCGGCGACGGCTATGCGGAGGAG
AGGAGGGGGCGGCGGAATGGATGACGACAAGATGGTGTTCGAAACAACGG
AAGGAGTGGAGGCAATCACGAGCTTCGACGCAATGGGAATAAAAGACGAT
CTGTTGCGTGGAATTTATCAGTACGGATTCGAGAAGCCATCGGCCATACA
ACAGAGGGCCGTTATGCCGATTATAAAGGGCCGTGATGTAATTGCACAGG
CCCAGTCTGGTACTGGCAAGACCTCTATGATTGCCCTAACTGTTTGCCAG
ACGGTCGATACTTCTAGCAGAGAGGTGCAGGCGTTGATTTTGTCACCTAC
GAGGGAGCTGGCGACGCAGACAGAGAAAGTGGTTTTGGCAATTGGTGATT
TTATTAACATACAAGCACATGCGTGTGTTGGAGGCAAAAGTGTCGGGGAA
GATATTAGGAAGTTAGAGCATGGAGTTCATGTGGTGTCTGGAACTCCGGG
TAGAGTCTGTGATATGATTAAGAGGAAAACTTTGCGTACTAGAGCTATTA
AATTATTGGTGCTTGATGAGTCTGATGAGATGCTGAGCAGAGGGTTCAAG
GATCAAATTTATGATGTGTACCGTTAT
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