FC868508
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC868508 vs. ExPASy Swiss-Prot
Match: RRP3_ASPOR (ATP-dependent rRNA helicase rrp3 OS=Aspergillus oryzae GN=rrp3 PE=3 SV=1) HSP 1 Score: 97.4413 bits (241), Expect = 7.114e-20 Identity = 54/164 (32.93%), Postives = 89/164 (54.27%), Query Frame = 3 Query: 159 EAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVVLAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKR-KTLRTRAIKLLVLDESDEMLSRGF 647 +A SF +G+ + L G++ P+AIQ A+ ++GRD+I A++G+GKT+ AL + Q + L+L+PTRELA Q + +G I++++ VGG + L H++ TPGR+ D ++ K R +K LV+DE+D +L F Sbjct: 49 QAPKSFKELGLIEQLCEACDSMGYKAPTAIQAEAIPLALQGRDLIGLAETGSGKTAAFALPILQALMDKPSSFFGLVLAPTRELAYQISQAFEGLGSTISVRSTVLVGGMDMVSQSIALGKKPHIIVATPGRLLDHLENTKGFSLRNLKYLVMDEADRLLDMDF 212
BLAST of FC868508 vs. ExPASy Swiss-Prot
Match: RH3_ORYSJ (DEAD-box ATP-dependent RNA helicase 3 OS=Oryza sativa subsp. japonica GN=Os03g0827700 PE=2 SV=2) HSP 1 Score: 97.4413 bits (241), Expect = 7.114e-20 Identity = 62/179 (34.64%), Postives = 99/179 (55.31%), Query Frame = 3 Query: 150 EGVEAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTV--DTSSREVQ------ALILSPTRELATQTEKVVLAIGDFINIQAHACV-GGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQI 659 EG E + +G+ + L+ + + G IQ+ ++P + GRD+IA+A++GTGKT + + + + + R V+ L+L+PTRELA Q EK + ++ CV GG S L GV VV GTPGR+ D+I +L+ +K LVLDE+D+ML+ GF++ + Sbjct: 98 EGDEDELAIARLGLPEQLVSTLEKRGITHLFPIQRAVLIPALDGRDLIARAKTGTGKTLAFGIPMIKQLMEEDDGRSVRRGRIPRVLVLAPTRELAKQVEKEIKESAPKLST---VCVYGGVSYNVQQNALSRGVDVVVGTPGRIIDLINGGSLQLGEVKYLVLDEADQMLAVGFEEDV 273
BLAST of FC868508 vs. ExPASy Swiss-Prot
Match: DRS1_PICST (ATP-dependent RNA helicase DRS1 OS=Pichia stipitis GN=DRS1 PE=3 SV=3) HSP 1 Score: 97.4413 bits (241), Expect = 7.114e-20 Identity = 54/172 (31.40%), Postives = 100/172 (58.14%), Query Frame = 3 Query: 168 TSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTV---DTSSREVQALILSPTRELATQTEKVVLAIGDFI-NIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRK-TLRTRAIKLLVLDESDEMLSRGFKDQIYDV 668 T+F + + +L+G+ Q G+ KPS IQ ++ + GRD++A A +G+GKT+ + + + + + + ++L+PTRELA Q V IG F+ N+ VGG ++ + ++L+ VV TPGR+ D I+ + ++++LV+DE+D ML GF+ ++ ++ Sbjct: 222 TTFQTLQLSRPVLKGLSQLGYTKPSPIQSASIPIALLGRDIVAGAVTGSGKTAAYMIPIIERLLYKPSKVASTRVIVLTPTRELAIQVGDVGKKIGQFVNNLNFGLAVGGLNLRQQEQQLKSRPDVVIATPGRLIDHIRNSPSFSIDSLEVLVIDEADRMLDEGFQVELTEI 393
BLAST of FC868508 vs. ExPASy Swiss-Prot
Match: DRS1_GIBZE (ATP-dependent RNA helicase DRS1 OS=Gibberella zeae GN=DRS1 PE=3 SV=1) HSP 1 Score: 97.4413 bits (241), Expect = 7.114e-20 Identity = 53/171 (30.99%), Postives = 95/171 (55.56%), Query Frame = 3 Query: 168 TSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREV---QALILSPTRELATQTEKVVLAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRK-TLRTRAIKLLVLDESDEMLSRGFKDQIYDV 668 +SF M + ++RG+ GF KP+ IQ +++ + G+DV+ A++G+GKT L + + + +++ + ++L PTRELA Q V + F +I+ VGG S+ +L+ V+ TPGR D ++ + +++LVLDE+D ML GF D++ ++ Sbjct: 256 SSFQTMSLSRPIMRGLASVGFTKPTPIQAKSIPIALMGKDVVGGAETGSGKTGAFILPILERLLYRPKKIPTTRVVVLLPTRELAIQCHAVATKLAAFTDIKFTLAVGGLSLKAQELELKLRPDVIIATPGRFIDHMRNSASFSVDTVEILVLDEADRMLEDGFADELNEI 426
BLAST of FC868508 vs. ExPASy Swiss-Prot
Match: DRS1_CHAGB (ATP-dependent RNA helicase DRS1 OS=Chaetomium globosum GN=DRS1 PE=3 SV=1) HSP 1 Score: 97.4413 bits (241), Expect = 7.114e-20 Identity = 58/183 (31.69%), Postives = 98/183 (53.55%), Query Frame = 3 Query: 141 ETTEGVE---AITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREV---QALILSPTRELATQTEKVVLAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRK-TLRTRAIKLLVLDESDEMLSRGFKDQIYDV 668 E TE V ++SF M + +LRG+ GF KP+ IQ + + + G+DV+ A +G+GKT+ + + + + ++V + ++L+PTRELA Q V + +I+ VGG S+ +L VV TPGR D ++ + +++LVLDE+D ML GF D++ ++ Sbjct: 264 EETENVGKKGGLSSFQGMSLSRPILRGLTSVGFTKPTPIQAKTIPIALMGKDVVGGAVTGSGKTAAFVVPILERLLYRPKKVPTTRVVVLTPTRELAIQCHSVATKLASHTDIKFCLAVGGLSLKVQEGELRLRPDVVIATPGRFIDHMRNSASFAVETVEILVLDEADRMLEDGFADELNEI 446
BLAST of FC868508 vs. ExPASy Swiss-Prot
Match: DDX27_HUMAN (Probable ATP-dependent RNA helicase DDX27 OS=Homo sapiens GN=DDX27 PE=1 SV=2) HSP 1 Score: 97.4413 bits (241), Expect = 7.114e-20 Identity = 59/183 (32.24%), Postives = 93/183 (50.82%), Query Frame = 3 Query: 138 FETTEGVEAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSRE---VQALILSPTRELATQTEKVVLAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKR-KTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYR 674 FE + SF M + LL+ I GF++P+ IQ+ + + G+D+ A A +GTGKT+ AL V + + R+ + L+L PTREL Q V + F NI VGG V L ++ TPGR+ D + + +I++L+LDE+D ML F++Q+ ++ R Sbjct: 208 FEDASQYDENLSFQDMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVLERLIYKPRQAPVTRVLVLVPTRELGIQVHSVTRQLAQFCNITTCLAVGGLDVKSQEAALRAAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIR 390
BLAST of FC868508 vs. ExPASy Swiss-Prot
Match: DBP5_AJECN (ATP-dependent RNA helicase DBP5 OS=Ajellomyces capsulata (strain NAm1 / WU24) GN=DBP5 PE=3 SV=1) HSP 1 Score: 97.4413 bits (241), Expect = 7.114e-20 Identity = 59/171 (34.50%), Postives = 99/171 (57.89%), Query Frame = 3 Query: 162 AITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKG--RDVIAQAQSGTGKTSMIALTVCQTVDTSSR---EVQALILSPTRELATQTEKVVLAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEML-SRGFKDQ 656 +I SF+ +G+ +L+G++ F +PS IQ++A+ ++ ++I Q+QSGTGKT+ L + +D S + QAL+L+P+RELA Q V+ +G +++ V E R + VV GTPG V D+I+++ + +K++VLDE+D ML +G DQ Sbjct: 87 SIKSFEELGLHPSILQGLHSMSFRRPSKIQEKALPLLLNNPPANMIGQSQSGTGKTAAFVLNILSRLDLSPQMELAPQALVLAPSRELARQIVGVIQVMGSYVD---KLKVATAVPMESNRNQKVEAPVVVGTPGTVMDLIRKRLFNPQHLKVIVLDEADNMLDQQGLGDQ 254
BLAST of FC868508 vs. ExPASy Swiss-Prot
Match: DBP2_LODEL (ATP-dependent RNA helicase DBP2 OS=Lodderomyces elongisporus GN=DBP2 PE=3 SV=1) HSP 1 Score: 97.4413 bits (241), Expect = 7.114e-20 Identity = 60/170 (35.29%), Postives = 85/170 (50.00%), Query Frame = 3 Query: 165 ITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQA-----LILSPTRELATQTEKVVLAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQI 659 ITSFD G D +L + GF KP+ IQ + + GRD++ A +G+GKT L ++ + L+L+PTRELA Q + G I+ GG G IR L +GV + TPGR+ DM++ + + LVLDE+D ML GF+ QI Sbjct: 115 ITSFDEAGFPDYVLNELKNQGFPKPTGIQCQGWPMALSGRDMVGIAATGSGKTLSYCLPGIVHINAQPLLKRGDGPIVLVLAPTRELACQIQTECSKFGASSRIRNTCVYGGAPKGPQIRDLANGVEICIATPGRLIDMLEAGKTNLKRVTYLVLDEADRMLDMGFEPQI 284
BLAST of FC868508 vs. ExPASy Swiss-Prot
Match: UAP56_DROME (ATP-dependent RNA helicase WM6 OS=Drosophila melanogaster GN=Hel25E PE=1 SV=1) HSP 1 Score: 97.0561 bits (240), Expect = 9.291e-20 Identity = 54/166 (32.53%), Postives = 90/166 (54.22%), Query Frame = 3 Query: 189 IKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREV-QALILSPTRELATQTEKVVLAIGDFI-NIQAHACVGGKSVGEDIRKLEHGV-HVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSR-GFKDQIYDVYR 674 +K ++LR I GFE PS +Q + + G D++ QA+SG GKT++ L Q ++ S L++ TRELA Q K ++ ++ GG ++ +D L+ G H+V GTPGR+ +I+ K L + +K VLDE D+ML + + + +++R Sbjct: 48 LKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLEPSDNNTCHVLVMCHTRELAFQISKEYERFSKYMPTVKVAVFFGGMAIQKDEETLKSGTPHIVVGTPGRILALIRNKKLNLKLLKHFVLDECDKMLEQLDMRRDVQEIFR 213
BLAST of FC868508 vs. ExPASy Swiss-Prot
Match: DBP2_COCIM (ATP-dependent RNA helicase DBP2 OS=Coccidioides immitis GN=DBP2 PE=3 SV=1) HSP 1 Score: 97.0561 bits (240), Expect = 9.291e-20 Identity = 58/170 (34.12%), Postives = 83/170 (48.82%), Query Frame = 3 Query: 165 ITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTS-----SREVQALILSPTRELATQTEKVVLAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQI 659 + +FD G ++ + GF KP+ IQ + + GRDV+ A++G+GKT L ++ L+L+PTRELA Q + + G I+ GG G IR L GV V TPGR+ DM++ R + LVLDE+D ML GF+ QI Sbjct: 124 VETFDEAGFPQYVISEVKAQGFAKPTPIQSQGWPMALSGRDVVGIAETGSGKTLTYCLPAIVHINAQPLLGPGDGPIVLVLAPTRELAVQIQAEITKFGKSSRIRNTCVYGGVPRGPQIRDLSRGVEVCIATPGRLIDMLEAGKTNLRRVTYLVLDEADRMLDMGFEPQI 293 The following BLAST results are available for this feature:
BLAST of FC868508 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >FC868508 ID=FC868508; Name=FC868508; organism=Citrus clementina; type=EST; length=677bpback to top |