FC868508

Overview
NameFC868508
Unique NameFC868508
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length677
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868508 vs. ExPASy Swiss-Prot
Match: RRP3_ASPOR (ATP-dependent rRNA helicase rrp3 OS=Aspergillus oryzae GN=rrp3 PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 7.114e-20
Identity = 54/164 (32.93%), Postives = 89/164 (54.27%), Query Frame = 3
Query:  159 EAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVVLAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKR-KTLRTRAIKLLVLDESDEMLSRGF 647
            +A  SF  +G+ + L       G++ P+AIQ  A+   ++GRD+I  A++G+GKT+  AL + Q +         L+L+PTRELA Q  +    +G  I++++   VGG  +      L    H++  TPGR+ D ++  K    R +K LV+DE+D +L   F
Sbjct:   49 QAPKSFKELGLIEQLCEACDSMGYKAPTAIQAEAIPLALQGRDLIGLAETGSGKTAAFALPILQALMDKPSSFFGLVLAPTRELAYQISQAFEGLGSTISVRSTVLVGGMDMVSQSIALGKKPHIIVATPGRLLDHLENTKGFSLRNLKYLVMDEADRLLDMDF 212          
BLAST of FC868508 vs. ExPASy Swiss-Prot
Match: RH3_ORYSJ (DEAD-box ATP-dependent RNA helicase 3 OS=Oryza sativa subsp. japonica GN=Os03g0827700 PE=2 SV=2)

HSP 1 Score: 97.4413 bits (241), Expect = 7.114e-20
Identity = 62/179 (34.64%), Postives = 99/179 (55.31%), Query Frame = 3
Query:  150 EGVEAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTV--DTSSREVQ------ALILSPTRELATQTEKVVLAIGDFINIQAHACV-GGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQI 659
            EG E   +   +G+ + L+  + + G      IQ+  ++P + GRD+IA+A++GTGKT    + + + +  +   R V+       L+L+PTRELA Q EK +      ++     CV GG S       L  GV VV GTPGR+ D+I   +L+   +K LVLDE+D+ML+ GF++ +
Sbjct:   98 EGDEDELAIARLGLPEQLVSTLEKRGITHLFPIQRAVLIPALDGRDLIARAKTGTGKTLAFGIPMIKQLMEEDDGRSVRRGRIPRVLVLAPTRELAKQVEKEIKESAPKLST---VCVYGGVSYNVQQNALSRGVDVVVGTPGRIIDLINGGSLQLGEVKYLVLDEADQMLAVGFEEDV 273          
BLAST of FC868508 vs. ExPASy Swiss-Prot
Match: DRS1_PICST (ATP-dependent RNA helicase DRS1 OS=Pichia stipitis GN=DRS1 PE=3 SV=3)

HSP 1 Score: 97.4413 bits (241), Expect = 7.114e-20
Identity = 54/172 (31.40%), Postives = 100/172 (58.14%), Query Frame = 3
Query:  168 TSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTV---DTSSREVQALILSPTRELATQTEKVVLAIGDFI-NIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRK-TLRTRAIKLLVLDESDEMLSRGFKDQIYDV 668
            T+F  + +   +L+G+ Q G+ KPS IQ  ++   + GRD++A A +G+GKT+   + + + +    +     + ++L+PTRELA Q   V   IG F+ N+     VGG ++ +  ++L+    VV  TPGR+ D I+   +    ++++LV+DE+D ML  GF+ ++ ++
Sbjct:  222 TTFQTLQLSRPVLKGLSQLGYTKPSPIQSASIPIALLGRDIVAGAVTGSGKTAAYMIPIIERLLYKPSKVASTRVIVLTPTRELAIQVGDVGKKIGQFVNNLNFGLAVGGLNLRQQEQQLKSRPDVVIATPGRLIDHIRNSPSFSIDSLEVLVIDEADRMLDEGFQVELTEI 393          
BLAST of FC868508 vs. ExPASy Swiss-Prot
Match: DRS1_GIBZE (ATP-dependent RNA helicase DRS1 OS=Gibberella zeae GN=DRS1 PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 7.114e-20
Identity = 53/171 (30.99%), Postives = 95/171 (55.56%), Query Frame = 3
Query:  168 TSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREV---QALILSPTRELATQTEKVVLAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRK-TLRTRAIKLLVLDESDEMLSRGFKDQIYDV 668
            +SF  M +   ++RG+   GF KP+ IQ +++   + G+DV+  A++G+GKT    L + + +    +++   + ++L PTRELA Q   V   +  F +I+    VGG S+     +L+    V+  TPGR  D ++   +     +++LVLDE+D ML  GF D++ ++
Sbjct:  256 SSFQTMSLSRPIMRGLASVGFTKPTPIQAKSIPIALMGKDVVGGAETGSGKTGAFILPILERLLYRPKKIPTTRVVVLLPTRELAIQCHAVATKLAAFTDIKFTLAVGGLSLKAQELELKLRPDVIIATPGRFIDHMRNSASFSVDTVEILVLDEADRMLEDGFADELNEI 426          
BLAST of FC868508 vs. ExPASy Swiss-Prot
Match: DRS1_CHAGB (ATP-dependent RNA helicase DRS1 OS=Chaetomium globosum GN=DRS1 PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 7.114e-20
Identity = 58/183 (31.69%), Postives = 98/183 (53.55%), Query Frame = 3
Query:  141 ETTEGVE---AITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREV---QALILSPTRELATQTEKVVLAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRK-TLRTRAIKLLVLDESDEMLSRGFKDQIYDV 668
            E TE V     ++SF  M +   +LRG+   GF KP+ IQ + +   + G+DV+  A +G+GKT+   + + + +    ++V   + ++L+PTRELA Q   V   +    +I+    VGG S+     +L     VV  TPGR  D ++   +     +++LVLDE+D ML  GF D++ ++
Sbjct:  264 EETENVGKKGGLSSFQGMSLSRPILRGLTSVGFTKPTPIQAKTIPIALMGKDVVGGAVTGSGKTAAFVVPILERLLYRPKKVPTTRVVVLTPTRELAIQCHSVATKLASHTDIKFCLAVGGLSLKVQEGELRLRPDVVIATPGRFIDHMRNSASFAVETVEILVLDEADRMLEDGFADELNEI 446          
BLAST of FC868508 vs. ExPASy Swiss-Prot
Match: DDX27_HUMAN (Probable ATP-dependent RNA helicase DDX27 OS=Homo sapiens GN=DDX27 PE=1 SV=2)

HSP 1 Score: 97.4413 bits (241), Expect = 7.114e-20
Identity = 59/183 (32.24%), Postives = 93/183 (50.82%), Query Frame = 3
Query:  138 FETTEGVEAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSRE---VQALILSPTRELATQTEKVVLAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKR-KTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYR 674
            FE     +   SF  M +   LL+ I   GF++P+ IQ+  +   + G+D+ A A +GTGKT+  AL V + +    R+    + L+L PTREL  Q   V   +  F NI     VGG  V      L     ++  TPGR+ D +    +    +I++L+LDE+D ML   F++Q+ ++ R
Sbjct:  208 FEDASQYDENLSFQDMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVLERLIYKPRQAPVTRVLVLVPTRELGIQVHSVTRQLAQFCNITTCLAVGGLDVKSQEAALRAAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIR 390          
BLAST of FC868508 vs. ExPASy Swiss-Prot
Match: DBP5_AJECN (ATP-dependent RNA helicase DBP5 OS=Ajellomyces capsulata (strain NAm1 / WU24) GN=DBP5 PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 7.114e-20
Identity = 59/171 (34.50%), Postives = 99/171 (57.89%), Query Frame = 3
Query:  162 AITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKG--RDVIAQAQSGTGKTSMIALTVCQTVDTSSR---EVQALILSPTRELATQTEKVVLAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEML-SRGFKDQ 656
            +I SF+ +G+   +L+G++   F +PS IQ++A+  ++     ++I Q+QSGTGKT+   L +   +D S +     QAL+L+P+RELA Q   V+  +G +++      V      E  R  +    VV GTPG V D+I+++    + +K++VLDE+D ML  +G  DQ
Sbjct:   87 SIKSFEELGLHPSILQGLHSMSFRRPSKIQEKALPLLLNNPPANMIGQSQSGTGKTAAFVLNILSRLDLSPQMELAPQALVLAPSRELARQIVGVIQVMGSYVD---KLKVATAVPMESNRNQKVEAPVVVGTPGTVMDLIRKRLFNPQHLKVIVLDEADNMLDQQGLGDQ 254          
BLAST of FC868508 vs. ExPASy Swiss-Prot
Match: DBP2_LODEL (ATP-dependent RNA helicase DBP2 OS=Lodderomyces elongisporus GN=DBP2 PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 7.114e-20
Identity = 60/170 (35.29%), Postives = 85/170 (50.00%), Query Frame = 3
Query:  165 ITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQA-----LILSPTRELATQTEKVVLAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQI 659
            ITSFD  G  D +L  +   GF KP+ IQ +     + GRD++  A +G+GKT    L     ++      +      L+L+PTRELA Q +      G    I+     GG   G  IR L +GV +   TPGR+ DM++      + +  LVLDE+D ML  GF+ QI
Sbjct:  115 ITSFDEAGFPDYVLNELKNQGFPKPTGIQCQGWPMALSGRDMVGIAATGSGKTLSYCLPGIVHINAQPLLKRGDGPIVLVLAPTRELACQIQTECSKFGASSRIRNTCVYGGAPKGPQIRDLANGVEICIATPGRLIDMLEAGKTNLKRVTYLVLDEADRMLDMGFEPQI 284          
BLAST of FC868508 vs. ExPASy Swiss-Prot
Match: UAP56_DROME (ATP-dependent RNA helicase WM6 OS=Drosophila melanogaster GN=Hel25E PE=1 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 9.291e-20
Identity = 54/166 (32.53%), Postives = 90/166 (54.22%), Query Frame = 3
Query:  189 IKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREV-QALILSPTRELATQTEKVVLAIGDFI-NIQAHACVGGKSVGEDIRKLEHGV-HVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSR-GFKDQIYDVYR 674
            +K ++LR I   GFE PS +Q   +   + G D++ QA+SG GKT++  L   Q ++ S       L++  TRELA Q  K       ++  ++     GG ++ +D   L+ G  H+V GTPGR+  +I+ K L  + +K  VLDE D+ML +   +  + +++R
Sbjct:   48 LKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLEPSDNNTCHVLVMCHTRELAFQISKEYERFSKYMPTVKVAVFFGGMAIQKDEETLKSGTPHIVVGTPGRILALIRNKKLNLKLLKHFVLDECDKMLEQLDMRRDVQEIFR 213          
BLAST of FC868508 vs. ExPASy Swiss-Prot
Match: DBP2_COCIM (ATP-dependent RNA helicase DBP2 OS=Coccidioides immitis GN=DBP2 PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 9.291e-20
Identity = 58/170 (34.12%), Postives = 83/170 (48.82%), Query Frame = 3
Query:  165 ITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTS-----SREVQALILSPTRELATQTEKVVLAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQI 659
            + +FD  G    ++  +   GF KP+ IQ +     + GRDV+  A++G+GKT    L     ++             L+L+PTRELA Q +  +   G    I+     GG   G  IR L  GV V   TPGR+ DM++      R +  LVLDE+D ML  GF+ QI
Sbjct:  124 VETFDEAGFPQYVISEVKAQGFAKPTPIQSQGWPMALSGRDVVGIAETGSGKTLTYCLPAIVHINAQPLLGPGDGPIVLVLAPTRELAVQIQAEITKFGKSSRIRNTCVYGGVPRGPQIRDLSRGVEVCIATPGRLIDMLEAGKTNLRRVTYLVLDEADRMLDMGFEPQI 293          
The following BLAST results are available for this feature:
BLAST of FC868508 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RRP3_ASPOR7.114e-2032.93ATP-dependent rRNA helicase rrp3 OS=Aspergillus or... [more]
RH3_ORYSJ7.114e-2034.64DEAD-box ATP-dependent RNA helicase 3 OS=Oryza sat... [more]
DRS1_PICST7.114e-2031.40ATP-dependent RNA helicase DRS1 OS=Pichia stipitis... [more]
DRS1_GIBZE7.114e-2030.99ATP-dependent RNA helicase DRS1 OS=Gibberella zeae... [more]
DRS1_CHAGB7.114e-2031.69ATP-dependent RNA helicase DRS1 OS=Chaetomium glob... [more]
DDX27_HUMAN7.114e-2032.24Probable ATP-dependent RNA helicase DDX27 OS=Homo ... [more]
DBP5_AJECN7.114e-2034.50ATP-dependent RNA helicase DBP5 OS=Ajellomyces cap... [more]
DBP2_LODEL7.114e-2035.29ATP-dependent RNA helicase DBP2 OS=Lodderomyces el... [more]
UAP56_DROME9.291e-2032.53ATP-dependent RNA helicase WM6 OS=Drosophila melan... [more]
DBP2_COCIM9.291e-2034.12ATP-dependent RNA helicase DBP2 OS=Coccidioides im... [more]

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Properties
Property NameValue
Genbank descriptionC31001C05EF AbioticL1 Citrus clementina cDNA clone C31001C05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868508 ID=FC868508; Name=FC868508; organism=Citrus clementina; type=EST; length=677bp
GCTCACCTGGAAGAGGAAACTCTCATTGATTCTTTGATTTCGAAGAGTAA
TTGTTGCGAATTTCGTGCGAGATGGCGGCGGCGACGGCTATGCGGAGGAG
AGGAGGGGGCGGCGGAATGGATGACGACAAGATGGTGTTCGAAACAACGG
AAGGAGTGGAGGCAATCACGAGCTTCGACGCAATGGGAATAAAAGACGAT
CTGTTGCGTGGAATTTATCAGTACGGATTCGAGAAGCCATCGGCCATACA
ACAGAGGGCCGTTATGCCGATTATAAAGGGCCGTGATGTAATTGCACAGG
CCCAGTCTGGTACTGGCAAGACCTCTATGATTGCCCTAACTGTTTGCCAG
ACGGTCGATACTTCTAGCAGAGAGGTGCAGGCGTTGATTTTGTCACCTAC
GAGGGAGCTGGCGACGCAGACAGAGAAAGTGGTTTTGGCAATTGGTGATT
TTATTAACATACAAGCACATGCGTGTGTTGGAGGCAAAAGTGTCGGGGAA
GATATTAGGAAGTTAGAGCATGGAGTTCATGTGGTGTCTGGAACTCCGGG
TAGAGTCTGTGATATGATTAAGAGGAAAACTTTGCGTACTAGAGCTATTA
AATTATTGGTGCTTGATGAGTCTGATGAGATGCTGAGCAGAGGGTTCAAG
GATCAAATTTATGATGTGTACCGTTAT
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