FC868508

Overview
NameFC868508
Unique NameFC868508
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length677
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868508 vs. ExPASy Swiss-Prot
Match: DBP2_KLULA (ATP-dependent RNA helicase DBP2 OS=Kluyveromyces lactis GN=DBP2 PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.213e-19
Identity = 61/170 (35.88%), Postives = 86/170 (50.59%), Query Frame = 3
Query:  165 ITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTV-----CQTVDTSSREVQALILSPTRELATQTEKVVLAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQI 659
            I SFD  G    +L  + Q GF KP+ IQ +     + GRD+I  A +G+GKT    L        Q + +       L+L+PTRELA Q +K     G    I+     GG    + IR L+ GV ++  TPGR+ DM++      + +  LVLDE+D ML  GF+ QI
Sbjct:  112 IRSFDEAGFPSYVLDEVKQEGFAKPTGIQCQGWPMALSGRDMIGVAATGSGKTLSYCLPGIVHINAQPLLSPGDGPIVLVLAPTRELAVQIQKECSKFGASSRIRNTCVYGGVPKSQQIRDLQRGVEILIATPGRLIDMLEIGKTNLKRVTYLVLDEADRMLDMGFEPQI 281          
BLAST of FC868508 vs. ExPASy Swiss-Prot
Match: DBP2_GIBZE (ATP-dependent RNA helicase DBP2 OS=Gibberella zeae GN=DBP2 PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.213e-19
Identity = 62/174 (35.63%), Postives = 90/174 (51.72%), Query Frame = 3
Query:  165 ITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVC--QTVDTSSREVQA-------LILSPTRELATQTEKVVLAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQI 659
            + +FD  G    ++  +   GF  P+AIQ +     + GRDV+  A++G+GKT    LT C    V  +++ + A       L+L+PTRELA Q ++ +   G    I+     GG   G  IR L  GV V   TPGR+ DM++      R +  LVLDE+D ML  GF+ QI
Sbjct:  133 VETFDEAGFPRYVMDEVKAQGFPAPTAIQSQGWPMALSGRDVVGIAETGSGKT----LTYCLPSIVHINAQPLLAPGDGPIVLVLAPTRELAVQIQEEMKKFGRSSRIRNTCVYGGVPKGPQIRDLSRGVEVCIATPGRLIDMLEAGKTNLRRVTYLVLDEADRMLDMGFEPQI 302          
BLAST of FC868508 vs. ExPASy Swiss-Prot
Match: DBP10_PICGU (ATP-dependent RNA helicase DBP10 OS=Pichia guilliermondii GN=DBP10 PE=3 SV=2)

HSP 1 Score: 96.6709 bits (239), Expect = 1.213e-19
Identity = 51/168 (30.36%), Postives = 97/168 (57.74%), Query Frame = 3
Query:  171 SFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREV--QALILSPTRELATQTEKVVLAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDV 668
            SF + G+   LL+ I + GF++P+ IQ++ +  +++ RDV+  A++G+GKT+   L V + + + S +V  +A+ILSP+RELA QT K V       ++++   +GG S+ +    +     ++  TPGR   +     L  + ++ +V DE+D +   GF +Q+ ++
Sbjct:  100 SFASFGLSKFLLKNIAKKGFKQPTPIQRKTIPLVMESRDVVGMARTGSGKTAAFVLPVVEKLKSHSPKVGVRAVILSPSRELALQTFKQVKEFTKGTDLRSIVLIGGDSLEDQFSSMMTNPDILVATPGRFLHLKVEMNLDLKTVEYIVFDEADRLFEMGFAEQLNEL 267          
BLAST of FC868508 vs. ExPASy Swiss-Prot
Match: PRP5_DEBHA (Pre-mRNA-processing ATP-dependent RNA helicase PRP5 OS=Debaryomyces hansenii GN=PRP5 PE=3 SV=2)

HSP 1 Score: 96.2857 bits (238), Expect = 1.585e-19
Identity = 53/156 (33.97%), Postives = 86/156 (55.13%), Query Frame = 3
Query:  228 FEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQA-----LILSPTRELATQTEKVVLAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRT---RAIKLLVLDESDEMLSRGFKDQIYDVY 671
            +  PS+IQ +A+  I+ GRD+I  A++G+GKT    L + + +       +      LI++PTRELA Q  K +      +NI +  C GG S+   I +L+ G  ++ GTPGR+ D++   + R    + +  LVLDE+D M   GF+ Q+  V+
Sbjct:  337 YSSPSSIQAQAIPAIMSGRDIIGVAKTGSGKTLSFVLPLLRHIQDQPPLKKGDGPIGLIMTPTRELALQIHKELNHFTKKLNISSCCCFGGSSIESQIAELKKGAQIIVGTPGRIIDLLAANSGRVTNLQRVTYLVLDEADRMFDMGFEPQVTKVF 492          
BLAST of FC868508 vs. ExPASy Swiss-Prot
Match: IF4AX_DICDI (Putative eukaryotic initiation factor 4A-like protein OS=Dictyostelium discoideum GN=DDB_G0292914 PE=5 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.585e-19
Identity = 56/189 (29.63%), Postives = 97/189 (51.32%), Query Frame = 3
Query:  174 FDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREV-----------------QALILSPTRELATQTEKVVLAIGDFIN----IQAHACVGGKSVGEDIRKLEHG-VHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYR 674
            F ++G+ + L+  I +YG  K +  Q   +  I +  +VI  +  GTG+T  + +     +D + ++                  Q L++ PT+EL+  T+ +  ++G   N     +  +C+GG  +  DI  L+ G   ++ GTPGR+ D+  RK   T  IK+LV DE DE+LSRGF+ Q+ D+ +
Sbjct:   16 FASLGLNEQLINNIKRYGITKLTPFQMEVIKEIKENSNVIVDSIEGTGRTISLIIGTLDKIDETKQQQEQEQQERQQTDQQFSFPQILMILPTKELSQTTKVIYSSLGGGENNNNDFKVLSCIGGVKISMDIEILKKGNTQILLGTPGRISDLFSRKRFDTDNIKILVFDELDEILSRGFECQLEDIIK 204          
BLAST of FC868508 vs. ExPASy Swiss-Prot
Match: DRS1_NEUCR (ATP-dependent RNA helicase drs-1 OS=Neurospora crassa GN=drs-1 PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.585e-19
Identity = 56/172 (32.56%), Postives = 95/172 (55.23%), Query Frame = 3
Query:  165 ITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREV---QALILSPTRELATQTEKVVLAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRK-TLRTRAIKLLVLDESDEMLSRGFKDQIYDV 668
            ++SF  M +   +LRG+   GF KP+ IQ + +   + G+DV+  A +G+GKT+   + + + +    ++V   + +IL+PTRELA Q   V + +    +I+    VGG S+     +L     VV  TPGR  D ++   +     I++LVLDE+D ML  GF D++ ++
Sbjct:  292 MSSFQEMSLSRPILRGLTSVGFTKPTPIQAKTIPISLMGKDVVGGAVTGSGKTAAFVVPILERLLYRPKKVPTTRVVILTPTRELAIQCHAVAVKLASHTDIKFCLAVGGLSLKVQEAELRLRPDVVIATPGRFIDHMRNSASFAVDTIEILVLDEADRMLEDGFADELNEI 463          
BLAST of FC868508 vs. ExPASy Swiss-Prot
Match: DDX27_MOUSE (Probable ATP-dependent RNA helicase DDX27 OS=Mus musculus GN=Ddx27 PE=1 SV=2)

HSP 1 Score: 96.2857 bits (238), Expect = 1.585e-19
Identity = 58/183 (31.69%), Postives = 94/183 (51.37%), Query Frame = 3
Query:  138 FETTEGVEAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSRE---VQALILSPTRELATQTEKVVLAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKR-KTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYR 674
            FE     +   SF  M +   LL+ I   GF++P+ IQ+  +   + G+D+ A A +GTGKT+  AL V + +    R+    + L+L PTREL  Q   V   +  F +I     VGG  V      L     ++  TPGR+ D +    +    +I++L+LDE+D+ML   F++Q+ ++ R
Sbjct:  174 FEDASEYDKSLSFQDMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVLERLIYKPRQAAVTRVLVLVPTRELGIQVHSVTKQLAQFCSITTCLAVGGLDVKSQEAALRAAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADKMLDEYFEEQMKEIIR 356          
BLAST of FC868508 vs. ExPASy Swiss-Prot
Match: RH42_ORYSJ (DEAD-box ATP-dependent RNA helicase 42 OS=Oryza sativa subsp. japonica GN=Os08g0159900 PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.070e-19
Identity = 59/166 (35.54%), Postives = 85/166 (51.20%), Query Frame = 3
Query:  186 GIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQA-----LILSPTRELATQTEKVVLAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMI---KRKTLRTRAIKLLVLDESDEMLSRGFKDQI 659
            G+   LL  I + GFEKP +IQ +A+  I+ GRD I  A++G+GKT    L + + V      V       LI++PTREL  Q    +      + I   A  GG  V + I +L+ G  +V  TPGR+ D++     K    R +  LV+DE+D M   GF+ QI
Sbjct:  430 GLTSKLLDTIKKLGFEKPMSIQAQALPIIMSGRDCIGIAKTGSGKTLAFVLPMLRHVKDQPAVVPGDGPIGLIMAPTRELVVQIHSDIKKFSKALGINCVAIYGGSGVAQQISELKRGAEIVVCTPGRMIDILCTSSGKITNLRRVTFLVMDEADRMFDMGFEPQI 595          
BLAST of FC868508 vs. ExPASy Swiss-Prot
Match: RH38_ARATH (DEAD-box ATP-dependent RNA helicase 38 OS=Arabidopsis thaliana GN=RH38 PE=2 SV=2)

HSP 1 Score: 95.9005 bits (237), Expect = 2.070e-19
Identity = 63/166 (37.95%), Postives = 93/166 (56.02%), Query Frame = 3
Query:  174 FDAMGIKDDLLRGIY-QYGFEKPSAIQQRAVMPIIKG--RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVVLAIGDFINIQAHACVGGKSVGED--IRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSR-GFKD 653
            F+ + +  +L++G+Y +  FEKPS IQ  ++  I+    + +IAQA +G+GKT+   L +   VD + RE QAL + PTRELA Q  +V+  +G F  I A   V   + G     R      HVV GTPG +   +  K L    +K+LV DE+D ML+  GF+D
Sbjct:   93 FEDLNLSPELMKGLYVEMKFEKPSKIQAISLPMIMTPPHKHLIAQAHNGSGKTTCFVLGMLSRVDPTLREPQALCICPTRELANQNMEVLQKMGKFTGITAELAVPDSTRGAPAATRGAPVSAHVVIGTPGTLKKWMAFKRLGLNHLKILVFDEADHMLATDGFRD 258          
BLAST of FC868508 vs. ExPASy Swiss-Prot
Match: PRP28_LODEL (Pre-mRNA-splicing ATP-dependent RNA helicase PRP28 OS=Lodderomyces elongisporus GN=PRP28 PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.070e-19
Identity = 57/190 (30.00%), Postives = 100/190 (52.63%), Query Frame = 3
Query:  144 TTEGVE---AITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTV----------DTSSREVQALILSPTRELATQTEKVVLAIGDFINIQAHACVGGKSVGEDIRKLEH-----GVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQI 659
            TT+G +   A  S+D  G+   +L  +  +GF +P+ +Q+ ++   ++ RDV+  A++G+GKT    L +   +          +    E  AL+L+PTRELA Q  +     G  +     + +GG+   E + ++++     GVH+V GTPGR+ D ++RK L       LV+DE+D M+  GF+  +
Sbjct:  174 TTKGKKIPHATRSWDESGLDPKILASLKSFGFRQPTPVQRASIPISLELRDVVGVAETGSGKTLAFLLPLLHYLSRVDGNYLNYEKVRNEPLALVLAPTRELALQITQEAEKFGKQLGFNVLSIIGGRQYQETMDQIDNMIVGRGVHIVVGTPGRLLDSVERKILNFSKCYYLVMDEADRMIDMGFEKDL 363          
The following BLAST results are available for this feature:
BLAST of FC868508 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DBP2_KLULA1.213e-1935.88ATP-dependent RNA helicase DBP2 OS=Kluyveromyces l... [more]
DBP2_GIBZE1.213e-1935.63ATP-dependent RNA helicase DBP2 OS=Gibberella zeae... [more]
DBP10_PICGU1.213e-1930.36ATP-dependent RNA helicase DBP10 OS=Pichia guillie... [more]
PRP5_DEBHA1.585e-1933.97Pre-mRNA-processing ATP-dependent RNA helicase PRP... [more]
IF4AX_DICDI1.585e-1929.63Putative eukaryotic initiation factor 4A-like prot... [more]
DRS1_NEUCR1.585e-1932.56ATP-dependent RNA helicase drs-1 OS=Neurospora cra... [more]
DDX27_MOUSE1.585e-1931.69Probable ATP-dependent RNA helicase DDX27 OS=Mus m... [more]
RH42_ORYSJ2.070e-1935.54DEAD-box ATP-dependent RNA helicase 42 OS=Oryza sa... [more]
RH38_ARATH2.070e-1937.95DEAD-box ATP-dependent RNA helicase 38 OS=Arabidop... [more]
PRP28_LODEL2.070e-1930.00Pre-mRNA-splicing ATP-dependent RNA helicase PRP28... [more]

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Properties
Property NameValue
Genbank descriptionC31001C05EF AbioticL1 Citrus clementina cDNA clone C31001C05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868508 ID=FC868508; Name=FC868508; organism=Citrus clementina; type=EST; length=677bp
GCTCACCTGGAAGAGGAAACTCTCATTGATTCTTTGATTTCGAAGAGTAA
TTGTTGCGAATTTCGTGCGAGATGGCGGCGGCGACGGCTATGCGGAGGAG
AGGAGGGGGCGGCGGAATGGATGACGACAAGATGGTGTTCGAAACAACGG
AAGGAGTGGAGGCAATCACGAGCTTCGACGCAATGGGAATAAAAGACGAT
CTGTTGCGTGGAATTTATCAGTACGGATTCGAGAAGCCATCGGCCATACA
ACAGAGGGCCGTTATGCCGATTATAAAGGGCCGTGATGTAATTGCACAGG
CCCAGTCTGGTACTGGCAAGACCTCTATGATTGCCCTAACTGTTTGCCAG
ACGGTCGATACTTCTAGCAGAGAGGTGCAGGCGTTGATTTTGTCACCTAC
GAGGGAGCTGGCGACGCAGACAGAGAAAGTGGTTTTGGCAATTGGTGATT
TTATTAACATACAAGCACATGCGTGTGTTGGAGGCAAAAGTGTCGGGGAA
GATATTAGGAAGTTAGAGCATGGAGTTCATGTGGTGTCTGGAACTCCGGG
TAGAGTCTGTGATATGATTAAGAGGAAAACTTTGCGTACTAGAGCTATTA
AATTATTGGTGCTTGATGAGTCTGATGAGATGCTGAGCAGAGGGTTCAAG
GATCAAATTTATGATGTGTACCGTTAT
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