FC868508
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC868508 vs. ExPASy Swiss-Prot
Match: DBP2_KLULA (ATP-dependent RNA helicase DBP2 OS=Kluyveromyces lactis GN=DBP2 PE=3 SV=1) HSP 1 Score: 96.6709 bits (239), Expect = 1.213e-19 Identity = 61/170 (35.88%), Postives = 86/170 (50.59%), Query Frame = 3 Query: 165 ITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTV-----CQTVDTSSREVQALILSPTRELATQTEKVVLAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQI 659 I SFD G +L + Q GF KP+ IQ + + GRD+I A +G+GKT L Q + + L+L+PTRELA Q +K G I+ GG + IR L+ GV ++ TPGR+ DM++ + + LVLDE+D ML GF+ QI Sbjct: 112 IRSFDEAGFPSYVLDEVKQEGFAKPTGIQCQGWPMALSGRDMIGVAATGSGKTLSYCLPGIVHINAQPLLSPGDGPIVLVLAPTRELAVQIQKECSKFGASSRIRNTCVYGGVPKSQQIRDLQRGVEILIATPGRLIDMLEIGKTNLKRVTYLVLDEADRMLDMGFEPQI 281
BLAST of FC868508 vs. ExPASy Swiss-Prot
Match: DBP2_GIBZE (ATP-dependent RNA helicase DBP2 OS=Gibberella zeae GN=DBP2 PE=3 SV=1) HSP 1 Score: 96.6709 bits (239), Expect = 1.213e-19 Identity = 62/174 (35.63%), Postives = 90/174 (51.72%), Query Frame = 3 Query: 165 ITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVC--QTVDTSSREVQA-------LILSPTRELATQTEKVVLAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQI 659 + +FD G ++ + GF P+AIQ + + GRDV+ A++G+GKT LT C V +++ + A L+L+PTRELA Q ++ + G I+ GG G IR L GV V TPGR+ DM++ R + LVLDE+D ML GF+ QI Sbjct: 133 VETFDEAGFPRYVMDEVKAQGFPAPTAIQSQGWPMALSGRDVVGIAETGSGKT----LTYCLPSIVHINAQPLLAPGDGPIVLVLAPTRELAVQIQEEMKKFGRSSRIRNTCVYGGVPKGPQIRDLSRGVEVCIATPGRLIDMLEAGKTNLRRVTYLVLDEADRMLDMGFEPQI 302
BLAST of FC868508 vs. ExPASy Swiss-Prot
Match: DBP10_PICGU (ATP-dependent RNA helicase DBP10 OS=Pichia guilliermondii GN=DBP10 PE=3 SV=2) HSP 1 Score: 96.6709 bits (239), Expect = 1.213e-19 Identity = 51/168 (30.36%), Postives = 97/168 (57.74%), Query Frame = 3 Query: 171 SFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREV--QALILSPTRELATQTEKVVLAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDV 668 SF + G+ LL+ I + GF++P+ IQ++ + +++ RDV+ A++G+GKT+ L V + + + S +V +A+ILSP+RELA QT K V ++++ +GG S+ + + ++ TPGR + L + ++ +V DE+D + GF +Q+ ++ Sbjct: 100 SFASFGLSKFLLKNIAKKGFKQPTPIQRKTIPLVMESRDVVGMARTGSGKTAAFVLPVVEKLKSHSPKVGVRAVILSPSRELALQTFKQVKEFTKGTDLRSIVLIGGDSLEDQFSSMMTNPDILVATPGRFLHLKVEMNLDLKTVEYIVFDEADRLFEMGFAEQLNEL 267
BLAST of FC868508 vs. ExPASy Swiss-Prot
Match: PRP5_DEBHA (Pre-mRNA-processing ATP-dependent RNA helicase PRP5 OS=Debaryomyces hansenii GN=PRP5 PE=3 SV=2) HSP 1 Score: 96.2857 bits (238), Expect = 1.585e-19 Identity = 53/156 (33.97%), Postives = 86/156 (55.13%), Query Frame = 3 Query: 228 FEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQA-----LILSPTRELATQTEKVVLAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRT---RAIKLLVLDESDEMLSRGFKDQIYDVY 671 + PS+IQ +A+ I+ GRD+I A++G+GKT L + + + + LI++PTRELA Q K + +NI + C GG S+ I +L+ G ++ GTPGR+ D++ + R + + LVLDE+D M GF+ Q+ V+ Sbjct: 337 YSSPSSIQAQAIPAIMSGRDIIGVAKTGSGKTLSFVLPLLRHIQDQPPLKKGDGPIGLIMTPTRELALQIHKELNHFTKKLNISSCCCFGGSSIESQIAELKKGAQIIVGTPGRIIDLLAANSGRVTNLQRVTYLVLDEADRMFDMGFEPQVTKVF 492
BLAST of FC868508 vs. ExPASy Swiss-Prot
Match: IF4AX_DICDI (Putative eukaryotic initiation factor 4A-like protein OS=Dictyostelium discoideum GN=DDB_G0292914 PE=5 SV=1) HSP 1 Score: 96.2857 bits (238), Expect = 1.585e-19 Identity = 56/189 (29.63%), Postives = 97/189 (51.32%), Query Frame = 3 Query: 174 FDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREV-----------------QALILSPTRELATQTEKVVLAIGDFIN----IQAHACVGGKSVGEDIRKLEHG-VHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYR 674 F ++G+ + L+ I +YG K + Q + I + +VI + GTG+T + + +D + ++ Q L++ PT+EL+ T+ + ++G N + +C+GG + DI L+ G ++ GTPGR+ D+ RK T IK+LV DE DE+LSRGF+ Q+ D+ + Sbjct: 16 FASLGLNEQLINNIKRYGITKLTPFQMEVIKEIKENSNVIVDSIEGTGRTISLIIGTLDKIDETKQQQEQEQQERQQTDQQFSFPQILMILPTKELSQTTKVIYSSLGGGENNNNDFKVLSCIGGVKISMDIEILKKGNTQILLGTPGRISDLFSRKRFDTDNIKILVFDELDEILSRGFECQLEDIIK 204
BLAST of FC868508 vs. ExPASy Swiss-Prot
Match: DRS1_NEUCR (ATP-dependent RNA helicase drs-1 OS=Neurospora crassa GN=drs-1 PE=3 SV=1) HSP 1 Score: 96.2857 bits (238), Expect = 1.585e-19 Identity = 56/172 (32.56%), Postives = 95/172 (55.23%), Query Frame = 3 Query: 165 ITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREV---QALILSPTRELATQTEKVVLAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRK-TLRTRAIKLLVLDESDEMLSRGFKDQIYDV 668 ++SF M + +LRG+ GF KP+ IQ + + + G+DV+ A +G+GKT+ + + + + ++V + +IL+PTRELA Q V + + +I+ VGG S+ +L VV TPGR D ++ + I++LVLDE+D ML GF D++ ++ Sbjct: 292 MSSFQEMSLSRPILRGLTSVGFTKPTPIQAKTIPISLMGKDVVGGAVTGSGKTAAFVVPILERLLYRPKKVPTTRVVILTPTRELAIQCHAVAVKLASHTDIKFCLAVGGLSLKVQEAELRLRPDVVIATPGRFIDHMRNSASFAVDTIEILVLDEADRMLEDGFADELNEI 463
BLAST of FC868508 vs. ExPASy Swiss-Prot
Match: DDX27_MOUSE (Probable ATP-dependent RNA helicase DDX27 OS=Mus musculus GN=Ddx27 PE=1 SV=2) HSP 1 Score: 96.2857 bits (238), Expect = 1.585e-19 Identity = 58/183 (31.69%), Postives = 94/183 (51.37%), Query Frame = 3 Query: 138 FETTEGVEAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSRE---VQALILSPTRELATQTEKVVLAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKR-KTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYR 674 FE + SF M + LL+ I GF++P+ IQ+ + + G+D+ A A +GTGKT+ AL V + + R+ + L+L PTREL Q V + F +I VGG V L ++ TPGR+ D + + +I++L+LDE+D+ML F++Q+ ++ R Sbjct: 174 FEDASEYDKSLSFQDMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVLERLIYKPRQAAVTRVLVLVPTRELGIQVHSVTKQLAQFCSITTCLAVGGLDVKSQEAALRAAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADKMLDEYFEEQMKEIIR 356
BLAST of FC868508 vs. ExPASy Swiss-Prot
Match: RH42_ORYSJ (DEAD-box ATP-dependent RNA helicase 42 OS=Oryza sativa subsp. japonica GN=Os08g0159900 PE=2 SV=1) HSP 1 Score: 95.9005 bits (237), Expect = 2.070e-19 Identity = 59/166 (35.54%), Postives = 85/166 (51.20%), Query Frame = 3 Query: 186 GIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQA-----LILSPTRELATQTEKVVLAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMI---KRKTLRTRAIKLLVLDESDEMLSRGFKDQI 659 G+ LL I + GFEKP +IQ +A+ I+ GRD I A++G+GKT L + + V V LI++PTREL Q + + I A GG V + I +L+ G +V TPGR+ D++ K R + LV+DE+D M GF+ QI Sbjct: 430 GLTSKLLDTIKKLGFEKPMSIQAQALPIIMSGRDCIGIAKTGSGKTLAFVLPMLRHVKDQPAVVPGDGPIGLIMAPTRELVVQIHSDIKKFSKALGINCVAIYGGSGVAQQISELKRGAEIVVCTPGRMIDILCTSSGKITNLRRVTFLVMDEADRMFDMGFEPQI 595
BLAST of FC868508 vs. ExPASy Swiss-Prot
Match: RH38_ARATH (DEAD-box ATP-dependent RNA helicase 38 OS=Arabidopsis thaliana GN=RH38 PE=2 SV=2) HSP 1 Score: 95.9005 bits (237), Expect = 2.070e-19 Identity = 63/166 (37.95%), Postives = 93/166 (56.02%), Query Frame = 3 Query: 174 FDAMGIKDDLLRGIY-QYGFEKPSAIQQRAVMPIIKG--RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVVLAIGDFINIQAHACVGGKSVGED--IRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSR-GFKD 653 F+ + + +L++G+Y + FEKPS IQ ++ I+ + +IAQA +G+GKT+ L + VD + RE QAL + PTRELA Q +V+ +G F I A V + G R HVV GTPG + + K L +K+LV DE+D ML+ GF+D Sbjct: 93 FEDLNLSPELMKGLYVEMKFEKPSKIQAISLPMIMTPPHKHLIAQAHNGSGKTTCFVLGMLSRVDPTLREPQALCICPTRELANQNMEVLQKMGKFTGITAELAVPDSTRGAPAATRGAPVSAHVVIGTPGTLKKWMAFKRLGLNHLKILVFDEADHMLATDGFRD 258
BLAST of FC868508 vs. ExPASy Swiss-Prot
Match: PRP28_LODEL (Pre-mRNA-splicing ATP-dependent RNA helicase PRP28 OS=Lodderomyces elongisporus GN=PRP28 PE=3 SV=1) HSP 1 Score: 95.9005 bits (237), Expect = 2.070e-19 Identity = 57/190 (30.00%), Postives = 100/190 (52.63%), Query Frame = 3 Query: 144 TTEGVE---AITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTV----------DTSSREVQALILSPTRELATQTEKVVLAIGDFINIQAHACVGGKSVGEDIRKLEH-----GVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQI 659 TT+G + A S+D G+ +L + +GF +P+ +Q+ ++ ++ RDV+ A++G+GKT L + + + E AL+L+PTRELA Q + G + + +GG+ E + ++++ GVH+V GTPGR+ D ++RK L LV+DE+D M+ GF+ + Sbjct: 174 TTKGKKIPHATRSWDESGLDPKILASLKSFGFRQPTPVQRASIPISLELRDVVGVAETGSGKTLAFLLPLLHYLSRVDGNYLNYEKVRNEPLALVLAPTRELALQITQEAEKFGKQLGFNVLSIIGGRQYQETMDQIDNMIVGRGVHIVVGTPGRLLDSVERKILNFSKCYYLVMDEADRMIDMGFEKDL 363 The following BLAST results are available for this feature:
BLAST of FC868508 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >FC868508 ID=FC868508; Name=FC868508; organism=Citrus clementina; type=EST; length=677bpback to top |