FC868508

Overview
NameFC868508
Unique NameFC868508
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length677
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868508 vs. ExPASy Swiss-Prot
Match: DRS1_DEBHA (ATP-dependent RNA helicase DRS1 OS=Debaryomyces hansenii GN=DRS1 PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.070e-19
Identity = 54/180 (30.00%), Postives = 102/180 (56.67%), Query Frame = 3
Query:  144 TTEGVEAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTV---DTSSREVQALILSPTRELATQTEKVVLAIGDFI-NIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRK-TLRTRAIKLLVLDESDEMLSRGFKDQIYDV 668
            TT   +  T+F ++ +   +L+G+ Q G+ KPS IQ   +   + G+D++A A +G+GKT+   + + + +          + ++L+PTRELA Q   V   IG F+ N+     VGG ++ +  ++L+    +V  TPGR+ D I+   +    ++++LV+DE+D ML  GF+ ++ ++
Sbjct:  250 TTAKKQLHTTFQSLQLSRPVLKGLSQLGYTKPSPIQSACIPIALLGKDIVAGAVTGSGKTAAYMIPIIERLLYKPAKISSTRVIVLAPTRELAIQVCDVGKKIGQFVNNLNFGLAVGGLNLRQQEQQLKTRPDIVIATPGRLIDHIRNSPSFSIDSLEVLVIDEADRMLDEGFQAELTEI 429          
BLAST of FC868508 vs. ExPASy Swiss-Prot
Match: DED1_VANPO (ATP-dependent RNA helicase DED1 OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294) GN=DED1 PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.070e-19
Identity = 64/189 (33.86%), Postives = 96/189 (50.79%), Query Frame = 3
Query:  147 TEGVEAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQT--------VDTSSREV-------QALILSPTRELATQTEKVVLAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDV 668
            T+  EAIT F +  +   LL  I    F KP+ +Q+ +V  + +GRD++A AQ+G+GKT      V           +  S+R+         AL+L+PTRELATQ             ++     GG  +G  IR L  G  ++  TPGR+ D+++R  +    +K LVLDE+D ML  GF+ QI  +
Sbjct:  153 TDVPEAITEFTSPPLDALLLENIILARFTKPTPVQKYSVPIVSRGRDLMACAQTGSGKTGGFLFPVLSESFKNGPSPMPESARKSFVKKAYPTALVLAPTRELATQIYDEAKKFTYRSWVRPTVVYGGSDIGSQIRDLSRGCDLLVATPGRLSDLLERGRVSLANVKYLVLDEADRMLDMGFEPQIRQI 341          
BLAST of FC868508 vs. ExPASy Swiss-Prot
Match: DBP2_SCLS1 (ATP-dependent RNA helicase dbp2 OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) GN=dbp2 PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.070e-19
Identity = 62/174 (35.63%), Postives = 89/174 (51.15%), Query Frame = 3
Query:  165 ITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVC--QTVDTSSREVQA-------LILSPTRELATQTEKVVLAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQI 659
            + +FD  G    ++  +   GF  P+ IQ +     + GRDV+  A++G+GKT    LT C    V  +++ + A       L+L+PTRELA Q ++ +   G    I+     GG   G  IR L  GV V   TPGR+ DMI+      R +  LVLDE+D ML  GF+ QI
Sbjct:  148 VETFDEAGFPAYVMTEVKAQGFPAPTPIQSQGWPMALSGRDVVGIAETGSGKT----LTYCLPAIVHINAQPLLAPGDGPIVLVLAPTRELAVQIQQEITKFGKSSRIRNTCVYGGVPKGGQIRDLAKGVEVCIATPGRLIDMIESGKTNLRRVTYLVLDEADRMLDMGFEPQI 317          
BLAST of FC868508 vs. ExPASy Swiss-Prot
Match: DBP2_CHAGB (ATP-dependent RNA helicase DBP2 OS=Chaetomium globosum GN=DBP2 PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.070e-19
Identity = 61/174 (35.06%), Postives = 89/174 (51.15%), Query Frame = 3
Query:  165 ITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVC--QTVDTSSREVQA-------LILSPTRELATQTEKVVLAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQI 659
            + +FD  G    ++  +   GF  P+AIQ +     + GRDV+  A++G+GKT    LT C    V  +++ + A       L+L+PTRELA Q ++ +   G    I+     GG   G   R L  GV V   TPGR+ DM++      R +  LVLDE+D ML  GF+ QI
Sbjct:  135 VETFDEAGFPRYVMDEVKAQGFPAPTAIQSQGWPMALSGRDVVGIAETGSGKT----LTYCLPAIVHINAQPLLAPGDGPIVLVLAPTRELAVQIQQEITKFGKSSRIRNTCVYGGVPKGPQTRDLSRGVEVCIATPGRLIDMLESGRTNLRRVTYLVLDEADRMLDMGFEPQI 304          
BLAST of FC868508 vs. ExPASy Swiss-Prot
Match: DBP2_BOTFB (ATP-dependent RNA helicase dbp2 OS=Botryotinia fuckeliana (strain B05.10) GN=dbp2 PE=3 SV=2)

HSP 1 Score: 95.9005 bits (237), Expect = 2.070e-19
Identity = 62/174 (35.63%), Postives = 89/174 (51.15%), Query Frame = 3
Query:  165 ITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVC--QTVDTSSREVQA-------LILSPTRELATQTEKVVLAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQI 659
            + +FD  G    ++  +   GF  P+ IQ +     + GRDV+  A++G+GKT    LT C    V  +++ + A       L+L+PTRELA Q ++ +   G    I+     GG   G  IR L  GV V   TPGR+ DMI+      R +  LVLDE+D ML  GF+ QI
Sbjct:  101 VETFDEAGFPAYVMTEVKAQGFPAPTPIQSQGWPMALSGRDVVGIAETGSGKT----LTYCLPAIVHINAQPLLAPGDGPIVLVLAPTRELAVQIQQEITKFGKSSRIRNTCVYGGVPKGGQIRDLAKGVEVCIATPGRLIDMIESGKTNLRRVTYLVLDEADRMLDMGFEPQI 270          
BLAST of FC868508 vs. ExPASy Swiss-Prot
Match: RHLB_VIBHB (ATP-dependent RNA helicase rhlB OS=Vibrio harveyi (strain ATCC BAA-1116 / BB120) GN=rhlB PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.703e-19
Identity = 57/174 (32.76%), Postives = 93/174 (53.45%), Query Frame = 3
Query:  174 FDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKT-SMIALTVCQTVDTSSRE------VQALILSPTRELATQTEKVVLAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYR 674
            F  +G+K  +  G+ + GFE  + IQ  A+  ++ G+D+  QAQ+GTGKT + +  T    + T   E       +A+I++PTRELA Q       +     ++A    GG+S  + + KL+ GV ++ GT GR+ D  K++      I+ +VLDE+D M   GF   I  ++R
Sbjct:   11 FADLGLKPQVTEGLEKKGFEYCTPIQALALPVLLTGQDIAGQAQTGTGKTLAFLTATFNHLLTTPEHEGRKPTQPRAIIMAPTRELAIQIFNDAAPLIASTGLKAALAYGGESYDKQLAKLQDGVDILIGTTGRIIDFYKQRVFNLNNIQAVVLDEADRMFDLGFIKDIRFLFR 184          
BLAST of FC868508 vs. ExPASy Swiss-Prot
Match: RH5_ORYSJ (DEAD-box ATP-dependent RNA helicase 5 OS=Oryza sativa subsp. japonica GN=Os07g0301200 PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.703e-19
Identity = 59/152 (38.82%), Postives = 79/152 (51.97%), Query Frame = 3
Query:  225 GFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQA-------LILSPTRELATQTEKVVLAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQI 659
            GFE+PS IQ  A   ++ GRD I  A +G+GKT    +     V     E  A       L+LSPTRELA Q   V+   G    I +    GG S G  I  L+ GV +V GTPGR+ D+I+    R   +  +VLDE+D ML  GF+ ++
Sbjct:  111 GFERPSPIQAYAWPYLLDGRDFIGIAATGSGKTIAFGVPALMHVRRKMGEKSAKKGVPRVLVLSPTRELAQQIADVLCEAGAPCGISSVCLYGGTSKGPQISALKSGVDIVIGTPGRMKDLIEMGICRLNDVSFVVLDEADRMLDMGFEPEV 262          
BLAST of FC868508 vs. ExPASy Swiss-Prot
Match: RH10_ARATH (DEAD-box ATP-dependent RNA helicase 10 OS=Arabidopsis thaliana GN=RH10 PE=2 SV=2)

HSP 1 Score: 95.5153 bits (236), Expect = 2.703e-19
Identity = 58/183 (31.69%), Postives = 101/183 (55.19%), Query Frame = 3
Query:  159 EAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTV-----DTSSREVQ-------ALILSPTRELATQTEKVVLAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCD-MIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDV 668
            E + +F  +G++++L++   + G++ PS IQ  A+   ++G+DVI  AQ+G+GKT   A+ + Q +     D+  ++ +       A +LSPTRELA Q  +   A+G  I+++    VGG    +    L    HV+  TPGR+ D M   K    +++K LVLDE+D +L+  F+  +  +
Sbjct:    6 EVVKTFAELGVREELVKACERLGWKNPSKIQAEALPFALEGKDVIGLAQTGSGKTGAFAIPILQALLEYVYDSEPKKGRRPDPAFFACVLSPTRELAIQIAEQFEALGADISLRCAVLVGGIDRMQQTIALGKRPHVIVATPGRLWDHMSDTKGFSLKSLKYLVLDEADRLLNEDFEKSLNQI 188          
BLAST of FC868508 vs. ExPASy Swiss-Prot
Match: DRS1_PHANO (ATP-dependent RNA helicase DRS1 OS=Phaeosphaeria nodorum GN=DRS1 PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.703e-19
Identity = 57/177 (32.20%), Postives = 95/177 (53.67%), Query Frame = 3
Query:  150 EGVEAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREV---QALILSPTRELATQTEKVVLAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCD-MIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDV 668
            +G ++I SF AM +   + +G+   GF +P+ IQ +A+   ++G+DV+  A++G+GKT+   + + + +    ++V   +  I  PTRELA Q   V   +  F +I      GG S  E    L+    VV  TPGR  D M      +   +++LVLDE+D ML  GF+ Q+ ++
Sbjct:  279 KGAKSIGSFHAMSLSRPIQKGLAAIGFTEPTPIQAKAIPIAMQGKDVVGGAETGSGKTAAFLIPILERLLYRPKKVPTTRVAIFMPTRELAVQCFNVATKLASFTDITFALLAGGFSSREQEVMLKTRPDVVIATPGRFIDHMHNTAAFQVEHLEILVLDEADRMLEEGFETQLNEI 455          
BLAST of FC868508 vs. ExPASy Swiss-Prot
Match: DRS1_MAGGR (ATP-dependent RNA helicase DRS1 OS=Magnaporthe grisea GN=DRS1 PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.703e-19
Identity = 54/170 (31.76%), Postives = 93/170 (54.71%), Query Frame = 3
Query:  171 SFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREV---QALILSPTRELATQTEKVVLAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRK-TLRTRAIKLLVLDESDEMLSRGFKDQIYDV 668
            SF +M +   +LRG+   GF KP+ IQ + +   + G+DV+  A +G+GKT+   + + + +    ++V   + +IL+PTRELA Q   V   +    +I+    VGG S+     +L     V+  TPGR  D ++   +     +++LVLDE+D ML  GF D++ ++
Sbjct:  256 SFQSMSLSRPILRGLTSVGFAKPTPIQSKTIPIALMGKDVVGGAVTGSGKTAAFVVPILERLLYRPKKVPTSRVVILAPTRELAIQCHAVATKLASHTDIKFCLAVGGLSLKVQESELRLRPDVIIATPGRFIDHMRNSASFAVDTVEILVLDEADRMLEDGFADELNEI 425          
The following BLAST results are available for this feature:
BLAST of FC868508 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DRS1_DEBHA2.070e-1930.00ATP-dependent RNA helicase DRS1 OS=Debaryomyces ha... [more]
DED1_VANPO2.070e-1933.86ATP-dependent RNA helicase DED1 OS=Vanderwaltozyma... [more]
DBP2_SCLS12.070e-1935.63ATP-dependent RNA helicase dbp2 OS=Sclerotinia scl... [more]
DBP2_CHAGB2.070e-1935.06ATP-dependent RNA helicase DBP2 OS=Chaetomium glob... [more]
DBP2_BOTFB2.070e-1935.63ATP-dependent RNA helicase dbp2 OS=Botryotinia fuc... [more]
RHLB_VIBHB2.703e-1932.76ATP-dependent RNA helicase rhlB OS=Vibrio harveyi ... [more]
RH5_ORYSJ2.703e-1938.82DEAD-box ATP-dependent RNA helicase 5 OS=Oryza sat... [more]
RH10_ARATH2.703e-1931.69DEAD-box ATP-dependent RNA helicase 10 OS=Arabidop... [more]
DRS1_PHANO2.703e-1932.20ATP-dependent RNA helicase DRS1 OS=Phaeosphaeria n... [more]
DRS1_MAGGR2.703e-1931.76ATP-dependent RNA helicase DRS1 OS=Magnaporthe gri... [more]

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Properties
Property NameValue
Genbank descriptionC31001C05EF AbioticL1 Citrus clementina cDNA clone C31001C05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868508 ID=FC868508; Name=FC868508; organism=Citrus clementina; type=EST; length=677bp
GCTCACCTGGAAGAGGAAACTCTCATTGATTCTTTGATTTCGAAGAGTAA
TTGTTGCGAATTTCGTGCGAGATGGCGGCGGCGACGGCTATGCGGAGGAG
AGGAGGGGGCGGCGGAATGGATGACGACAAGATGGTGTTCGAAACAACGG
AAGGAGTGGAGGCAATCACGAGCTTCGACGCAATGGGAATAAAAGACGAT
CTGTTGCGTGGAATTTATCAGTACGGATTCGAGAAGCCATCGGCCATACA
ACAGAGGGCCGTTATGCCGATTATAAAGGGCCGTGATGTAATTGCACAGG
CCCAGTCTGGTACTGGCAAGACCTCTATGATTGCCCTAACTGTTTGCCAG
ACGGTCGATACTTCTAGCAGAGAGGTGCAGGCGTTGATTTTGTCACCTAC
GAGGGAGCTGGCGACGCAGACAGAGAAAGTGGTTTTGGCAATTGGTGATT
TTATTAACATACAAGCACATGCGTGTGTTGGAGGCAAAAGTGTCGGGGAA
GATATTAGGAAGTTAGAGCATGGAGTTCATGTGGTGTCTGGAACTCCGGG
TAGAGTCTGTGATATGATTAAGAGGAAAACTTTGCGTACTAGAGCTATTA
AATTATTGGTGCTTGATGAGTCTGATGAGATGCTGAGCAGAGGGTTCAAG
GATCAAATTTATGATGTGTACCGTTAT
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