FC868508

Overview
NameFC868508
Unique NameFC868508
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length677
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868508 vs. ExPASy Swiss-Prot
Match: DRS1_CANAL (ATP-dependent RNA helicase DRS1 OS=Candida albicans GN=DRS1 PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.703e-19
Identity = 54/180 (30.00%), Postives = 101/180 (56.11%), Query Frame = 3
Query:  138 FETTEGVEAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQ-TVDTSSREVQALILSPTRELATQTEKVVLAIGDFI-NIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRK-TLRTRAIKLLVLDESDEMLSRGFKDQIYDV 668
            +E +   +  TSF  + +   +L+GI +  F KP+ IQ  ++   + G+D++A AQ+G+GKT    + + +  +   S   + +IL+PTRELA Q  +    +   + N+     VGG ++ +   +L+    +V  TPGR+ D I+   +   + I++LV+DE+D ML  GF+D++ ++
Sbjct:  120 YEESSPQQTHTSFQTLQLSRPVLKGIAELKFTKPTPIQSASIPIALLGKDIVAGAQTGSGKTGAYMIPIIERLLYKPSTSTKVIILTPTRELALQVYEFGKKLSHHVNNLNIGLAVGGLNLRQQEEQLKTRPDIVIATPGRLIDHIRNSPSFSVQDIQVLVIDEADRMLEEGFQDELTEI 299          
BLAST of FC868508 vs. ExPASy Swiss-Prot
Match: DED1_ASHGO (ATP-dependent RNA helicase DED1 OS=Ashbya gossypii GN=DED1 PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.703e-19
Identity = 62/181 (34.25%), Postives = 96/181 (53.04%), Query Frame = 3
Query:  159 EAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTV---------CQTVDTSSREVQ-----ALILSPTRELATQTEKVVLAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQI 659
            + IT F +  + + LL  I    F KP+ +Q+ +V  + KGRD++A AQ+G+GKT      V           T D S   ++     A++L+PTRELATQ             ++     GG  + + IR+LE G  ++  TPGR+ D+++R  +   ++K LVLDE+D ML  GF+ QI
Sbjct:  143 DPITEFTSPPLDELLLENIKLARFTKPTPVQKYSVPIVAKGRDLMACAQTGSGKTGGFLFPVLSQSFSNGPASTPDESGYYMRKAYPTAVVLAPTRELATQIFDEAKKFTYRSWVKPCVVYGGADIRQQIRELERGCDLIVATPGRLNDLLERGKISLCSVKYLVLDEADRMLDMGFEPQI 323          
BLAST of FC868508 vs. ExPASy Swiss-Prot
Match: DDX27_BOVIN (Probable ATP-dependent RNA helicase DDX27 OS=Bos taurus GN=DDX27 PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.703e-19
Identity = 58/183 (31.69%), Postives = 93/183 (50.82%), Query Frame = 3
Query:  138 FETTEGVEAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSRE---VQALILSPTRELATQTEKVVLAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKR-KTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYR 674
            FE     +   SF  M +   LL+ I   GF++P+ IQ+  +   + G+D+ A A +GTGKT+  AL V + +    R+    + L+L PTREL  Q   V   +  F +I     VGG  V      L     ++  TPGR+ D +    +    +I++L+LDE+D ML   F++Q+ ++ R
Sbjct:  177 FEDASQYDENLSFQDMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVLERLIYKPRQAPVTRVLVLVPTRELGIQVHSVTKQLAQFCSITTCLAVGGLDVKSQEAALRAAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIR 359          
BLAST of FC868508 vs. ExPASy Swiss-Prot
Match: DBP4_PICST (ATP-dependent RNA helicase DBP4 OS=Pichia stipitis GN=DBP4 PE=3 SV=2)

HSP 1 Score: 95.5153 bits (236), Expect = 2.703e-19
Identity = 57/175 (32.57%), Postives = 99/175 (56.57%), Query Frame = 3
Query:  159 EAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTV----DTSSREVQALILSPTRELATQTEKVVLAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKT-LRTRAIKLLVLDESDEMLSRGFKDQIYDV 668
            ++I+ F  + I  + LRG+ +  F   + IQ++ +   +KG D++  A++G+GKT    + V +++     T    + ALI+SPTRELA QT +V+  IG +    A    GGK V  +  ++   ++++ GTPGR+   +     + T  +++LVLDE+D  L  GFK QI ++
Sbjct:   44 KSISQFSDLPITQETLRGLNESSFMSLTDIQKKTIPIALKGEDLMGTARTGSGKTLAFLIPVVESLIRNKITEHDGLAALIVSPTRELAVQTFEVLTKIGKYNTFSAGLVTGGKDVQYEKERVSR-MNILVGTPGRISQHLNEAVGMETSNLQVLVLDEADRCLDMGFKKQIDNI 217          
BLAST of FC868508 vs. ExPASy Swiss-Prot
Match: DBP3_LODEL (ATP-dependent RNA helicase DBP3 OS=Lodderomyces elongisporus GN=DBP3 PE=3 SV=2)

HSP 1 Score: 95.5153 bits (236), Expect = 2.703e-19
Identity = 56/166 (33.73%), Postives = 95/166 (57.23%), Query Frame = 3
Query:  165 ITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTS-SREVQALILSPTRELATQTEKVVLAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQI 659
            I SFD + ++ D+   + +  F KP+ IQ  +   ++ G+DV+  A++G+GKT    +     + TS ++++  L +SPTRELA Q    +  +    ++   A  GG S  + I+K+ +G +VV  TPGR+ D+I    +   +I  LVLDE+D ML +GF++ I
Sbjct:  127 ILSFDQIKLQKDVSSKLTK--FPKPTPIQSVSWPFLLDGKDVVGVAETGSGKTFAFGVPAINNIITSKNKDLSVLCISPTRELALQIYDNLEDLTRGTDVSCVAIYGGVSKDDQIKKIRNGANVVVATPGRLVDLINDGAVDLSSINYLVLDEADRMLEKGFEEDI 290          
BLAST of FC868508 vs. ExPASy Swiss-Prot
Match: SUB2_PHANO (ATP-dependent RNA helicase SUB2 OS=Phaeosphaeria nodorum GN=SUB2 PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.530e-19
Identity = 59/176 (33.52%), Postives = 92/176 (52.27%), Query Frame = 3
Query:  168 TSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSRE--VQALILSPTRELATQTEKVVLAIGDFI-NIQAHACVGGKSVGEDIRKLEH---GVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSR-GFKDQIYDVYR 674
            T F    +KD+L+R I   GFE PS +QQ  +   I G DV+ QA+SG GKT++  L   Q +D          L++  TRELA Q          F+ +++     GG  V +DI  L +     H++ GTPGR+  +++ + LR   +K  VLDE D+ML +   ++ +  ++R
Sbjct:   52 TGFRDFLLKDELVRAITDCGFEHPSEVQQVTIPQAILGNDVLCQAKSGLGKTAVFVLATLQQMDEKPEPGVASILVMCHTRELAYQIRNEYNRFAKFLPDVKVGVFYGGTPVAKDIELLSNKDTHPHIIVGTPGRINALVRDRHLRLANLKHFVLDECDKMLDQPDMRNDVQAIFR 227          
BLAST of FC868508 vs. ExPASy Swiss-Prot
Match: SRMB_ECOLI (ATP-dependent RNA helicase srmB OS=Escherichia coli (strain K12) GN=srmB PE=1 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.530e-19
Identity = 55/169 (32.54%), Postives = 82/169 (48.52%), Query Frame = 3
Query:  165 ITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQA----LILSPTRELATQTEKVVLAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQI 659
            +T+F  + + + LL  +   GF +P+AIQ  A+ P + GRDV+  A +GTGKT+   L   Q +    R+       LIL+PTRELA Q       +    ++      GG +             +V  T GR+   IK +    RA++ L+LDE+D ML  GF   I
Sbjct:    3 VTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDI 171          
BLAST of FC868508 vs. ExPASy Swiss-Prot
Match: RRP3_USTMA (ATP-dependent rRNA helicase RRP3 OS=Ustilago maydis GN=RRP3 PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.530e-19
Identity = 52/159 (32.70%), Postives = 87/159 (54.72%), Query Frame = 3
Query:  174 FDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVVLAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKR-KTLRTRAIKLLVLDESDEMLSRGF 647
            F  +G+   ++      GF+ P+ IQ +A+   ++ RDVI  AQ+G+GKT+   + + Q +  + +   A +L+PTRELA Q  + V A+G  I +++   VGG  +      L    HV+  TPGR+ D ++  K    R ++ LV+DE+D +L   F
Sbjct:  106 FSDLGVIPQIVEACTNMGFKHPTPIQVKAIPEALQARDVIGLAQTGSGKTAAFTIPILQALWDNPKPFFACVLAPTRELAYQISQQVEALGSTIGVRSATIVGGMDMMSQSIALSKRPHVIVATPGRLQDHLENTKGFSLRGLQYLVMDEADRLLDMDF 264          
BLAST of FC868508 vs. ExPASy Swiss-Prot
Match: RRP3_PHANO (ATP-dependent rRNA helicase RRP3 OS=Phaeosphaeria nodorum GN=RRP3 PE=3 SV=2)

HSP 1 Score: 95.1301 bits (235), Expect = 3.530e-19
Identity = 50/169 (29.59%), Postives = 92/169 (54.44%), Query Frame = 3
Query:  171 SFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVVLAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKR-KTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYR 674
            +F  +G++++L       G++  + IQ  ++   + G+D+I  A++G+GKT+   L + Q +    +    LI++PTRELA Q  + V A+G  IN++    VGG  +      L    H++  +PGR+ D ++  K    + +K LVLDE+D +L   F D +  +++
Sbjct:  116 TFADLGVREELCDACENLGYKTATPIQTESIPLALAGKDIIGLAETGSGKTAAFVLPILQALLDKPQAYFGLIMAPTRELAYQISQQVDALGSIINVKCATLVGGMDMVPQAIALSKRPHIIVASPGRLLDHLENTKGFSLKHLKYLVLDEADRLLDLDFGDSLDKIFK 284          
BLAST of FC868508 vs. ExPASy Swiss-Prot
Match: RHLB_VIBVY (ATP-dependent RNA helicase rhlB OS=Vibrio vulnificus (strain YJ016) GN=rhlB PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.530e-19
Identity = 58/174 (33.33%), Postives = 94/174 (54.02%), Query Frame = 3
Query:  174 FDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKT-SMIALTVCQTVDTSSRE------VQALILSPTRELATQTEKVVLAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYR 674
            F  +G+   ++ G+ + GFE  + IQ  A+  ++ G+D+  QAQ+GTGKT + +  T    + T + E       +A+I++PTRELA Q       +     I+A    GG+S  + + KL+ GV V+ GT GR+ D  K++      I+ +VLDE+D M   GF   I  ++R
Sbjct:   11 FADLGLNPQVVEGLEKKGFEFCTPIQALALPVLLSGQDIAGQAQTGTGKTLAFLTATFNHLLTTHAHEGRQPTQPRAIIMAPTRELAIQIYNDAEPLIASTGIKAALAYGGESYDKQLAKLQGGVDVLIGTTGRIIDFYKQRVFNLNNIQAVVLDEADRMFDLGFIKDIRFLFR 184          
The following BLAST results are available for this feature:
BLAST of FC868508 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DRS1_CANAL2.703e-1930.00ATP-dependent RNA helicase DRS1 OS=Candida albican... [more]
DED1_ASHGO2.703e-1934.25ATP-dependent RNA helicase DED1 OS=Ashbya gossypii... [more]
DDX27_BOVIN2.703e-1931.69Probable ATP-dependent RNA helicase DDX27 OS=Bos t... [more]
DBP4_PICST2.703e-1932.57ATP-dependent RNA helicase DBP4 OS=Pichia stipitis... [more]
DBP3_LODEL2.703e-1933.73ATP-dependent RNA helicase DBP3 OS=Lodderomyces el... [more]
SUB2_PHANO3.530e-1933.52ATP-dependent RNA helicase SUB2 OS=Phaeosphaeria n... [more]
SRMB_ECOLI3.530e-1932.54ATP-dependent RNA helicase srmB OS=Escherichia col... [more]
RRP3_USTMA3.530e-1932.70ATP-dependent rRNA helicase RRP3 OS=Ustilago maydi... [more]
RRP3_PHANO3.530e-1929.59ATP-dependent rRNA helicase RRP3 OS=Phaeosphaeria ... [more]
RHLB_VIBVY3.530e-1933.33ATP-dependent RNA helicase rhlB OS=Vibrio vulnific... [more]

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Properties
Property NameValue
Genbank descriptionC31001C05EF AbioticL1 Citrus clementina cDNA clone C31001C05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868508 ID=FC868508; Name=FC868508; organism=Citrus clementina; type=EST; length=677bp
GCTCACCTGGAAGAGGAAACTCTCATTGATTCTTTGATTTCGAAGAGTAA
TTGTTGCGAATTTCGTGCGAGATGGCGGCGGCGACGGCTATGCGGAGGAG
AGGAGGGGGCGGCGGAATGGATGACGACAAGATGGTGTTCGAAACAACGG
AAGGAGTGGAGGCAATCACGAGCTTCGACGCAATGGGAATAAAAGACGAT
CTGTTGCGTGGAATTTATCAGTACGGATTCGAGAAGCCATCGGCCATACA
ACAGAGGGCCGTTATGCCGATTATAAAGGGCCGTGATGTAATTGCACAGG
CCCAGTCTGGTACTGGCAAGACCTCTATGATTGCCCTAACTGTTTGCCAG
ACGGTCGATACTTCTAGCAGAGAGGTGCAGGCGTTGATTTTGTCACCTAC
GAGGGAGCTGGCGACGCAGACAGAGAAAGTGGTTTTGGCAATTGGTGATT
TTATTAACATACAAGCACATGCGTGTGTTGGAGGCAAAAGTGTCGGGGAA
GATATTAGGAAGTTAGAGCATGGAGTTCATGTGGTGTCTGGAACTCCGGG
TAGAGTCTGTGATATGATTAAGAGGAAAACTTTGCGTACTAGAGCTATTA
AATTATTGGTGCTTGATGAGTCTGATGAGATGCTGAGCAGAGGGTTCAAG
GATCAAATTTATGATGTGTACCGTTAT
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