FC868508

Overview
NameFC868508
Unique NameFC868508
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length677
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868508 vs. ExPASy Swiss-Prot
Match: RHLB_VIBVU (ATP-dependent RNA helicase rhlB OS=Vibrio vulnificus GN=rhlB PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.530e-19
Identity = 58/174 (33.33%), Postives = 94/174 (54.02%), Query Frame = 3
Query:  174 FDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKT-SMIALTVCQTVDTSSRE------VQALILSPTRELATQTEKVVLAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYR 674
            F  +G+   ++ G+ + GFE  + IQ  A+  ++ G+D+  QAQ+GTGKT + +  T    + T + E       +A+I++PTRELA Q       +     I+A    GG+S  + + KL+ GV V+ GT GR+ D  K++      I+ +VLDE+D M   GF   I  ++R
Sbjct:   11 FADLGLNPQVVEGLEKKGFEFCTPIQALALPVLLSGQDIAGQAQTGTGKTLAFLTATFNHLLTTPAHEGRQPTQPRAIIMAPTRELAIQIYNDAEPLIASTGIKAALAYGGESYDKQLTKLQGGVDVLIGTTGRIIDFYKQRVFNLNNIQAVVLDEADRMFDLGFIKDIRFLFR 184          
BLAST of FC868508 vs. ExPASy Swiss-Prot
Match: RH56_ARATH (DEAD-box ATP-dependent RNA helicase 56 OS=Arabidopsis thaliana GN=RH56 PE=2 SV=2)

HSP 1 Score: 95.1301 bits (235), Expect = 3.530e-19
Identity = 58/166 (34.94%), Postives = 93/166 (56.02%), Query Frame = 3
Query:  189 IKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVVLAIGDFI-NIQAHACVGGKS--VGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEML-SRGFKDQIYDVYR 674
            +K +LLR I   GFE PS +Q   +   I G DVI QA+SG GKT++  L+  Q ++ S  +V AL+L  TRELA Q     +    ++ + +     GG +  + +D+ K E   H+V GTPGRV  + + K L  + ++  +LDE D+ML S   +  + ++++
Sbjct:   53 LKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPSPGQVSALVLCHTRELAYQICNEFVRFSTYLPDTKVSVFYGGVNIKIHKDLLKNE-CPHIVVGTPGRVLALAREKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFK 217          
BLAST of FC868508 vs. ExPASy Swiss-Prot
Match: RH3_ARATH (DEAD-box ATP-dependent RNA helicase 3 OS=Arabidopsis thaliana GN=RH3 PE=1 SV=2)

HSP 1 Score: 95.1301 bits (235), Expect = 3.530e-19
Identity = 60/187 (32.09%), Postives = 101/187 (54.01%), Query Frame = 3
Query:  141 ETTEGVEAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQA----------LILSPTRELATQTEKVVLAIGDFINIQAHACV-GGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDV 668
            E  +G E   S   + +   L   + + G      IQ+  ++P ++GRD+IA+A++GTGKT    + + + +   + +  A          L+L+PTRELA Q EK +     +++     CV GG S       L  GV VV GTPGR+ D+I+ ++L+   ++ LVLDE+D+ML+ GF++ +  +
Sbjct:   95 EADDGEELAIS--KLSLPQRLEESLEKRGITHLFPIQRAVLVPALQGRDIIARAKTGTGKTLAFGIPIIKRLTEEAGDYTAFRRSGRLPKFLVLAPTRELAKQVEKEIKESAPYLST---VCVYGGVSYTIQQSALTRGVDVVVGTPGRIIDLIEGRSLKLGEVEYLVLDEADQMLAVGFEEAVESI 276          
BLAST of FC868508 vs. ExPASy Swiss-Prot
Match: RH15_ARATH (DEAD-box ATP-dependent RNA helicase 15 OS=Arabidopsis thaliana GN=RH15 PE=2 SV=2)

HSP 1 Score: 95.1301 bits (235), Expect = 3.530e-19
Identity = 58/166 (34.94%), Postives = 93/166 (56.02%), Query Frame = 3
Query:  189 IKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVVLAIGDFI-NIQAHACVGGKS--VGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEML-SRGFKDQIYDVYR 674
            +K +LLR I   GFE PS +Q   +   I G DVI QA+SG GKT++  L+  Q ++ S  +V AL+L  TRELA Q     +    ++ + +     GG +  + +D+ K E   H+V GTPGRV  + + K L  + ++  +LDE D+ML S   +  + ++++
Sbjct:   53 LKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPSPGQVSALVLCHTRELAYQICNEFVRFSTYLPDTKVSVFYGGVNIKIHKDLLKNE-CPHIVVGTPGRVLALAREKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFK 217          
BLAST of FC868508 vs. ExPASy Swiss-Prot
Match: DBP2_YEAST (ATP-dependent RNA helicase DBP2 OS=Saccharomyces cerevisiae GN=DBP2 PE=1 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.530e-19
Identity = 58/170 (34.12%), Postives = 84/170 (49.41%), Query Frame = 3
Query:  165 ITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQA-----LILSPTRELATQTEKVVLAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQI 659
            IT+FD  G  D +L  +   GF+KP+ IQ +     + GRD++  A +G+GKT    L     ++             L+L+PTRELA Q +      G    I+     GG    + IR L  G  +V  TPGR+ DM++      + +  LVLDE+D ML  GF+ QI
Sbjct:  112 ITTFDEAGFPDYVLNEVKAEGFDKPTGIQCQGWPMALSGRDMVGIAATGSGKTLSYCLPGIVHINAQPLLAPGDGPIVLVLAPTRELAVQIQTECSKFGHSSRIRNTCVYGGVPKSQQIRDLSRGSEIVIATPGRLIDMLEIGKTNLKRVTYLVLDEADRMLDMGFEPQI 281          
BLAST of FC868508 vs. ExPASy Swiss-Prot
Match: DBP2_YEAS7 (ATP-dependent RNA helicase DBP2 OS=Saccharomyces cerevisiae (strain YJM789) GN=DBP2 PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.530e-19
Identity = 58/170 (34.12%), Postives = 84/170 (49.41%), Query Frame = 3
Query:  165 ITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQA-----LILSPTRELATQTEKVVLAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQI 659
            IT+FD  G  D +L  +   GF+KP+ IQ +     + GRD++  A +G+GKT    L     ++             L+L+PTRELA Q +      G    I+     GG    + IR L  G  +V  TPGR+ DM++      + +  LVLDE+D ML  GF+ QI
Sbjct:  112 ITTFDEAGFPDYVLNEVKAEGFDKPTGIQCQGWPMALSGRDMVGIAATGSGKTLSYCLPGIVHINAQPLLAPGDGPIVLVLAPTRELAVQIQTECSKFGHSSRIRNTCVYGGVPKSQQIRDLSRGSEIVIATPGRLIDMLEIGKTNLKRVTYLVLDEADRMLDMGFEPQI 281          
BLAST of FC868508 vs. ExPASy Swiss-Prot
Match: SUB2_NEOFI (ATP-dependent RNA helicase sub2 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=sub2 PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.611e-19
Identity = 58/174 (33.33%), Postives = 92/174 (52.87%), Query Frame = 3
Query:  168 TSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVVLAIGDFI-NIQAHACVGGKSVGEDIRKL---EHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSR-GFKDQIYDVYR 674
            T F    +K +LLR I   GFE PS +QQ  +   I   DV+ QA+SG GKT++  LT    ++    E   L++  TRELA Q +        ++ +++     GG  + +DI  L   E   ++V GTPGR+  +++ K L  R +K  VLDE D+ML +   +  + +++R
Sbjct:   58 TGFRDFLLKGELLRAITDCGFEHPSEVQQVCIPTAILNVDVLCQAKSGLGKTAVFVLTTLHQLEPVPGECSVLVMCHTRELAYQIKNEYARFSKYLPDVKTAVFYGGTPIQKDIEVLSNKESYPNIVVGTPGRLNALVREKKLSLRNVKAFVLDECDKMLDQIDMRRDVQEIFR 231          
BLAST of FC868508 vs. ExPASy Swiss-Prot
Match: SPB4_ENCCU (ATP-dependent rRNA helicase SPB4 OS=Encephalitozoon cuniculi GN=SPB4 PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.611e-19
Identity = 51/167 (30.54%), Postives = 97/167 (58.08%), Query Frame = 3
Query:  186 GIKDDLLRG-----IYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTV-DTSSRE---VQALILSPTRELATQTEKVVLAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQI 659
            GI+D  + G     I + GF K + +Q + +  ++KG+DV+ Q+ +GTGKT      +   + D   R    V A++++PTRELA Q  +V        +++    +GG S+ ED ++++    +  GTPGR+ +++ ++T +  ++  LVLDE+D++L  GF++++
Sbjct:    5 GIEDVAMNGRLKKEIEENGFGKMTEVQLKCIPEVLKGKDVVVQSPTGTGKTMAFLAPILSCIYDGKGRGRPGVTAVVITPTRELALQIREVA----GLFDVKCECFIGGMSIEEDYKRMKEEFSIAVGTPGRLLEIVGKETKKFSSLSHLVLDEADKLLGFGFEEKL 167          
BLAST of FC868508 vs. ExPASy Swiss-Prot
Match: RRP3_ASPNC (ATP-dependent rRNA helicase rrp3 OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=rrp3 PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.611e-19
Identity = 52/160 (32.50%), Postives = 88/160 (55.00%), Query Frame = 3
Query:  171 SFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVVLAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKR-KTLRTRAIKLLVLDESDEMLSRGF 647
            +F  +GI + L       G++ P+ IQ+ ++   +KGRD+I  A++G+GKT+  AL + Q +    +    L+L+PTRELA Q  K   ++G  + +++   VGG  +      L    H++  TPGR+ D ++  K    R +K LV+DE+D +L   F
Sbjct:   49 TFKELGIIEQLCEACETMGYKAPTPIQRESIPLALKGRDLIGLAETGSGKTAAFALPILQALMEKPQPFFGLVLAPTRELAYQISKSFESLGASMGVRSCVIVGGMDMVSQSISLGKKPHIIVATPGRLLDHLENTKGFSLRNLKYLVMDEADRLLDMDF 208          
BLAST of FC868508 vs. ExPASy Swiss-Prot
Match: RH45_ORYSJ (DEAD-box ATP-dependent RNA helicase 45 OS=Oryza sativa subsp. japonica GN=Os08g0154200 PE=3 SV=2)

HSP 1 Score: 94.7449 bits (234), Expect = 4.611e-19
Identity = 59/166 (35.54%), Postives = 84/166 (50.60%), Query Frame = 3
Query:  186 GIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQA-----LILSPTRELATQTEKVVLAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMI---KRKTLRTRAIKLLVLDESDEMLSRGFKDQI 659
            G+   LL  I + GFEKP  IQ +A+  I+ GRD I  A++G+GKT    L + + V      V       LI++PTREL  Q    +      + I   A  GG  V + I +L+ G  +V  TPGR+ D++     K    R +  LV+DE+D M   GF+ QI
Sbjct:  291 GLTSKLLDTIKKLGFEKPMPIQAQALPIIMSGRDCIGIAKTGSGKTLAFVLPMLRHVKDQPPVVPGDGPIGLIMAPTRELVVQIHSDIKKFAKSLGINCVAIYGGSGVAQQISELKRGAEIVVCTPGRMIDILCTSSGKITNLRRVTFLVMDEADRMFDMGFEPQI 456          
The following BLAST results are available for this feature:
BLAST of FC868508 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RHLB_VIBVU3.530e-1933.33ATP-dependent RNA helicase rhlB OS=Vibrio vulnific... [more]
RH56_ARATH3.530e-1934.94DEAD-box ATP-dependent RNA helicase 56 OS=Arabidop... [more]
RH3_ARATH3.530e-1932.09DEAD-box ATP-dependent RNA helicase 3 OS=Arabidops... [more]
RH15_ARATH3.530e-1934.94DEAD-box ATP-dependent RNA helicase 15 OS=Arabidop... [more]
DBP2_YEAST3.530e-1934.12ATP-dependent RNA helicase DBP2 OS=Saccharomyces c... [more]
DBP2_YEAS73.530e-1934.12ATP-dependent RNA helicase DBP2 OS=Saccharomyces c... [more]
SUB2_NEOFI4.611e-1933.33ATP-dependent RNA helicase sub2 OS=Neosartorya fis... [more]
SPB4_ENCCU4.611e-1930.54ATP-dependent rRNA helicase SPB4 OS=Encephalitozoo... [more]
RRP3_ASPNC4.611e-1932.50ATP-dependent rRNA helicase rrp3 OS=Aspergillus ni... [more]
RH45_ORYSJ4.611e-1935.54DEAD-box ATP-dependent RNA helicase 45 OS=Oryza sa... [more]

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Properties
Property NameValue
Genbank descriptionC31001C05EF AbioticL1 Citrus clementina cDNA clone C31001C05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868508 ID=FC868508; Name=FC868508; organism=Citrus clementina; type=EST; length=677bp
GCTCACCTGGAAGAGGAAACTCTCATTGATTCTTTGATTTCGAAGAGTAA
TTGTTGCGAATTTCGTGCGAGATGGCGGCGGCGACGGCTATGCGGAGGAG
AGGAGGGGGCGGCGGAATGGATGACGACAAGATGGTGTTCGAAACAACGG
AAGGAGTGGAGGCAATCACGAGCTTCGACGCAATGGGAATAAAAGACGAT
CTGTTGCGTGGAATTTATCAGTACGGATTCGAGAAGCCATCGGCCATACA
ACAGAGGGCCGTTATGCCGATTATAAAGGGCCGTGATGTAATTGCACAGG
CCCAGTCTGGTACTGGCAAGACCTCTATGATTGCCCTAACTGTTTGCCAG
ACGGTCGATACTTCTAGCAGAGAGGTGCAGGCGTTGATTTTGTCACCTAC
GAGGGAGCTGGCGACGCAGACAGAGAAAGTGGTTTTGGCAATTGGTGATT
TTATTAACATACAAGCACATGCGTGTGTTGGAGGCAAAAGTGTCGGGGAA
GATATTAGGAAGTTAGAGCATGGAGTTCATGTGGTGTCTGGAACTCCGGG
TAGAGTCTGTGATATGATTAAGAGGAAAACTTTGCGTACTAGAGCTATTA
AATTATTGGTGCTTGATGAGTCTGATGAGATGCTGAGCAGAGGGTTCAAG
GATCAAATTTATGATGTGTACCGTTAT
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