FC868508
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC868508 vs. ExPASy Swiss-Prot
Match: RHLB_VIBVU (ATP-dependent RNA helicase rhlB OS=Vibrio vulnificus GN=rhlB PE=3 SV=1) HSP 1 Score: 95.1301 bits (235), Expect = 3.530e-19 Identity = 58/174 (33.33%), Postives = 94/174 (54.02%), Query Frame = 3 Query: 174 FDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKT-SMIALTVCQTVDTSSRE------VQALILSPTRELATQTEKVVLAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYR 674 F +G+ ++ G+ + GFE + IQ A+ ++ G+D+ QAQ+GTGKT + + T + T + E +A+I++PTRELA Q + I+A GG+S + + KL+ GV V+ GT GR+ D K++ I+ +VLDE+D M GF I ++R Sbjct: 11 FADLGLNPQVVEGLEKKGFEFCTPIQALALPVLLSGQDIAGQAQTGTGKTLAFLTATFNHLLTTPAHEGRQPTQPRAIIMAPTRELAIQIYNDAEPLIASTGIKAALAYGGESYDKQLTKLQGGVDVLIGTTGRIIDFYKQRVFNLNNIQAVVLDEADRMFDLGFIKDIRFLFR 184
BLAST of FC868508 vs. ExPASy Swiss-Prot
Match: RH56_ARATH (DEAD-box ATP-dependent RNA helicase 56 OS=Arabidopsis thaliana GN=RH56 PE=2 SV=2) HSP 1 Score: 95.1301 bits (235), Expect = 3.530e-19 Identity = 58/166 (34.94%), Postives = 93/166 (56.02%), Query Frame = 3 Query: 189 IKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVVLAIGDFI-NIQAHACVGGKS--VGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEML-SRGFKDQIYDVYR 674 +K +LLR I GFE PS +Q + I G DVI QA+SG GKT++ L+ Q ++ S +V AL+L TRELA Q + ++ + + GG + + +D+ K E H+V GTPGRV + + K L + ++ +LDE D+ML S + + ++++ Sbjct: 53 LKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPSPGQVSALVLCHTRELAYQICNEFVRFSTYLPDTKVSVFYGGVNIKIHKDLLKNE-CPHIVVGTPGRVLALAREKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFK 217
BLAST of FC868508 vs. ExPASy Swiss-Prot
Match: RH3_ARATH (DEAD-box ATP-dependent RNA helicase 3 OS=Arabidopsis thaliana GN=RH3 PE=1 SV=2) HSP 1 Score: 95.1301 bits (235), Expect = 3.530e-19 Identity = 60/187 (32.09%), Postives = 101/187 (54.01%), Query Frame = 3 Query: 141 ETTEGVEAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQA----------LILSPTRELATQTEKVVLAIGDFINIQAHACV-GGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDV 668 E +G E S + + L + + G IQ+ ++P ++GRD+IA+A++GTGKT + + + + + + A L+L+PTRELA Q EK + +++ CV GG S L GV VV GTPGR+ D+I+ ++L+ ++ LVLDE+D+ML+ GF++ + + Sbjct: 95 EADDGEELAIS--KLSLPQRLEESLEKRGITHLFPIQRAVLVPALQGRDIIARAKTGTGKTLAFGIPIIKRLTEEAGDYTAFRRSGRLPKFLVLAPTRELAKQVEKEIKESAPYLST---VCVYGGVSYTIQQSALTRGVDVVVGTPGRIIDLIEGRSLKLGEVEYLVLDEADQMLAVGFEEAVESI 276
BLAST of FC868508 vs. ExPASy Swiss-Prot
Match: RH15_ARATH (DEAD-box ATP-dependent RNA helicase 15 OS=Arabidopsis thaliana GN=RH15 PE=2 SV=2) HSP 1 Score: 95.1301 bits (235), Expect = 3.530e-19 Identity = 58/166 (34.94%), Postives = 93/166 (56.02%), Query Frame = 3 Query: 189 IKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVVLAIGDFI-NIQAHACVGGKS--VGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEML-SRGFKDQIYDVYR 674 +K +LLR I GFE PS +Q + I G DVI QA+SG GKT++ L+ Q ++ S +V AL+L TRELA Q + ++ + + GG + + +D+ K E H+V GTPGRV + + K L + ++ +LDE D+ML S + + ++++ Sbjct: 53 LKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPSPGQVSALVLCHTRELAYQICNEFVRFSTYLPDTKVSVFYGGVNIKIHKDLLKNE-CPHIVVGTPGRVLALAREKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFK 217
BLAST of FC868508 vs. ExPASy Swiss-Prot
Match: DBP2_YEAST (ATP-dependent RNA helicase DBP2 OS=Saccharomyces cerevisiae GN=DBP2 PE=1 SV=1) HSP 1 Score: 95.1301 bits (235), Expect = 3.530e-19 Identity = 58/170 (34.12%), Postives = 84/170 (49.41%), Query Frame = 3 Query: 165 ITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQA-----LILSPTRELATQTEKVVLAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQI 659 IT+FD G D +L + GF+KP+ IQ + + GRD++ A +G+GKT L ++ L+L+PTRELA Q + G I+ GG + IR L G +V TPGR+ DM++ + + LVLDE+D ML GF+ QI Sbjct: 112 ITTFDEAGFPDYVLNEVKAEGFDKPTGIQCQGWPMALSGRDMVGIAATGSGKTLSYCLPGIVHINAQPLLAPGDGPIVLVLAPTRELAVQIQTECSKFGHSSRIRNTCVYGGVPKSQQIRDLSRGSEIVIATPGRLIDMLEIGKTNLKRVTYLVLDEADRMLDMGFEPQI 281
BLAST of FC868508 vs. ExPASy Swiss-Prot
Match: DBP2_YEAS7 (ATP-dependent RNA helicase DBP2 OS=Saccharomyces cerevisiae (strain YJM789) GN=DBP2 PE=3 SV=1) HSP 1 Score: 95.1301 bits (235), Expect = 3.530e-19 Identity = 58/170 (34.12%), Postives = 84/170 (49.41%), Query Frame = 3 Query: 165 ITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQA-----LILSPTRELATQTEKVVLAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQI 659 IT+FD G D +L + GF+KP+ IQ + + GRD++ A +G+GKT L ++ L+L+PTRELA Q + G I+ GG + IR L G +V TPGR+ DM++ + + LVLDE+D ML GF+ QI Sbjct: 112 ITTFDEAGFPDYVLNEVKAEGFDKPTGIQCQGWPMALSGRDMVGIAATGSGKTLSYCLPGIVHINAQPLLAPGDGPIVLVLAPTRELAVQIQTECSKFGHSSRIRNTCVYGGVPKSQQIRDLSRGSEIVIATPGRLIDMLEIGKTNLKRVTYLVLDEADRMLDMGFEPQI 281
BLAST of FC868508 vs. ExPASy Swiss-Prot
Match: SUB2_NEOFI (ATP-dependent RNA helicase sub2 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=sub2 PE=3 SV=1) HSP 1 Score: 94.7449 bits (234), Expect = 4.611e-19 Identity = 58/174 (33.33%), Postives = 92/174 (52.87%), Query Frame = 3 Query: 168 TSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVVLAIGDFI-NIQAHACVGGKSVGEDIRKL---EHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSR-GFKDQIYDVYR 674 T F +K +LLR I GFE PS +QQ + I DV+ QA+SG GKT++ LT ++ E L++ TRELA Q + ++ +++ GG + +DI L E ++V GTPGR+ +++ K L R +K VLDE D+ML + + + +++R Sbjct: 58 TGFRDFLLKGELLRAITDCGFEHPSEVQQVCIPTAILNVDVLCQAKSGLGKTAVFVLTTLHQLEPVPGECSVLVMCHTRELAYQIKNEYARFSKYLPDVKTAVFYGGTPIQKDIEVLSNKESYPNIVVGTPGRLNALVREKKLSLRNVKAFVLDECDKMLDQIDMRRDVQEIFR 231
BLAST of FC868508 vs. ExPASy Swiss-Prot
Match: SPB4_ENCCU (ATP-dependent rRNA helicase SPB4 OS=Encephalitozoon cuniculi GN=SPB4 PE=3 SV=1) HSP 1 Score: 94.7449 bits (234), Expect = 4.611e-19 Identity = 51/167 (30.54%), Postives = 97/167 (58.08%), Query Frame = 3 Query: 186 GIKDDLLRG-----IYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTV-DTSSRE---VQALILSPTRELATQTEKVVLAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQI 659 GI+D + G I + GF K + +Q + + ++KG+DV+ Q+ +GTGKT + + D R V A++++PTRELA Q +V +++ +GG S+ ED ++++ + GTPGR+ +++ ++T + ++ LVLDE+D++L GF++++ Sbjct: 5 GIEDVAMNGRLKKEIEENGFGKMTEVQLKCIPEVLKGKDVVVQSPTGTGKTMAFLAPILSCIYDGKGRGRPGVTAVVITPTRELALQIREVA----GLFDVKCECFIGGMSIEEDYKRMKEEFSIAVGTPGRLLEIVGKETKKFSSLSHLVLDEADKLLGFGFEEKL 167
BLAST of FC868508 vs. ExPASy Swiss-Prot
Match: RRP3_ASPNC (ATP-dependent rRNA helicase rrp3 OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=rrp3 PE=3 SV=1) HSP 1 Score: 94.7449 bits (234), Expect = 4.611e-19 Identity = 52/160 (32.50%), Postives = 88/160 (55.00%), Query Frame = 3 Query: 171 SFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVVLAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKR-KTLRTRAIKLLVLDESDEMLSRGF 647 +F +GI + L G++ P+ IQ+ ++ +KGRD+I A++G+GKT+ AL + Q + + L+L+PTRELA Q K ++G + +++ VGG + L H++ TPGR+ D ++ K R +K LV+DE+D +L F Sbjct: 49 TFKELGIIEQLCEACETMGYKAPTPIQRESIPLALKGRDLIGLAETGSGKTAAFALPILQALMEKPQPFFGLVLAPTRELAYQISKSFESLGASMGVRSCVIVGGMDMVSQSISLGKKPHIIVATPGRLLDHLENTKGFSLRNLKYLVMDEADRLLDMDF 208
BLAST of FC868508 vs. ExPASy Swiss-Prot
Match: RH45_ORYSJ (DEAD-box ATP-dependent RNA helicase 45 OS=Oryza sativa subsp. japonica GN=Os08g0154200 PE=3 SV=2) HSP 1 Score: 94.7449 bits (234), Expect = 4.611e-19 Identity = 59/166 (35.54%), Postives = 84/166 (50.60%), Query Frame = 3 Query: 186 GIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQA-----LILSPTRELATQTEKVVLAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMI---KRKTLRTRAIKLLVLDESDEMLSRGFKDQI 659 G+ LL I + GFEKP IQ +A+ I+ GRD I A++G+GKT L + + V V LI++PTREL Q + + I A GG V + I +L+ G +V TPGR+ D++ K R + LV+DE+D M GF+ QI Sbjct: 291 GLTSKLLDTIKKLGFEKPMPIQAQALPIIMSGRDCIGIAKTGSGKTLAFVLPMLRHVKDQPPVVPGDGPIGLIMAPTRELVVQIHSDIKKFAKSLGINCVAIYGGSGVAQQISELKRGAEIVVCTPGRMIDILCTSSGKITNLRRVTFLVMDEADRMFDMGFEPQI 456 The following BLAST results are available for this feature:
BLAST of FC868508 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >FC868508 ID=FC868508; Name=FC868508; organism=Citrus clementina; type=EST; length=677bpback to top |