FC868508

Overview
NameFC868508
Unique NameFC868508
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length677
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868508 vs. ExPASy Swiss-Prot
Match: PRP5_NEOFI (Pre-mRNA-processing ATP-dependent RNA helicase prp5 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=prp5 PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.611e-19
Identity = 56/177 (31.64%), Postives = 95/177 (53.67%), Query Frame = 3
Query:  165 ITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQ------ALILSPTRELATQTEKVVLAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRT---RAIKLLVLDESDEMLSRGFKDQIYDV 668
            +  +   G+    L  I++ G+E P++IQ +A+  I+ GRDVI  A++G+GKT    + + + +    R ++       LI++PTRELATQ  K        +N++A    GG  + + I +L+ G  +V  TPGR+ D++     R    R +  +VLDE+D M   GF+ Q+  +
Sbjct:  556 VMKWSQCGLGVQTLDVIHRLGYENPTSIQSQAIPAIMSGRDVIGVAKTGSGKTIAFLIPMFRHI-RDQRPLENMEGPIGLIMTPTRELATQIHKDCKPFLKALNLRAVCAYGGAPIKDQIAELKRGAEIVVCTPGRMIDLLAANAGRVTNLRRVTYVVLDEADRMFDMGFEPQVMKI 731          
BLAST of FC868508 vs. ExPASy Swiss-Prot
Match: PRP5_COCIM (Pre-mRNA-processing ATP-dependent RNA helicase PRP5 OS=Coccidioides immitis GN=PRP5 PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.611e-19
Identity = 56/177 (31.64%), Postives = 96/177 (54.24%), Query Frame = 3
Query:  165 ITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQ------ALILSPTRELATQTEKVVLAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRT---RAIKLLVLDESDEMLSRGFKDQIYDV 668
            +  +   G+    L  I + G+E+P++IQ +A+  I+ GRDVI  A++G+GKT    L + + +    R ++       LI++PTRELATQ  K        +N++A    GG  + + I +L+ G  ++  TPGR+ D++   + R    R +  +VLDE+D M   GF+ Q+  +
Sbjct:  558 VQKWSQCGLGVQTLDVIRKLGYEQPTSIQSQAIPAIMSGRDVIGVAKTGSGKTIAFLLPMFRHIK-DQRPLENMEGPVGLIMTPTRELATQIHKECKPFLKALNLRAVCAYGGAPIKDQIAELKRGAEIIVCTPGRMIDLLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMKI 733          
BLAST of FC868508 vs. ExPASy Swiss-Prot
Match: MAK5_EMENI (ATP-dependent RNA helicase mak5 OS=Emericella nidulans GN=mak5 PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.611e-19
Identity = 60/186 (32.26%), Postives = 102/186 (54.84%), Query Frame = 3
Query:  165 ITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQ---------TVDTSSREVQ---ALILSPTRELATQTEKVVLAI---GDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKR---KTLRTRAIKLLVLDESDEMLSRGFKDQIYDV 668
            I++++ +G+  + L  + +  F  P+++Q+  + PI+ G DVI +A +G+GKT    L + +         T+D+   + +   ALILSPTRELA Q +K +  +      +N +     GG SV +  R LE    +V GTPGRV ++++       R + IK LV+DE+D +LS G   ++ D+
Sbjct:  196 ISAWEPLGLSPETLTSLSKLKFSTPTSVQKSCIPPILDGHDVIGKASTGSGKTLAFGLPILEHYLERERRKTIDSEEEKEKIPIALILSPTRELAHQLQKHIYGLISNAPGVNARTALLTGGLSVQKQQRLLE-TADIVIGTPGRVWEVLRTGQGLIRRMQGIKFLVIDEADRLLSEGHFKEVEDI 380          
BLAST of FC868508 vs. ExPASy Swiss-Prot
Match: DDX3Y_PONAB (ATP-dependent RNA helicase DDX3Y OS=Pongo abelii GN=DDX3Y PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.611e-19
Identity = 62/184 (33.70%), Postives = 97/184 (52.72%), Query Frame = 3
Query:  165 ITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKG-RDVIAQAQSGTGKTSMIALTVCQTVDTSS---------------REVQ---ALILSPTRELATQTEKVVLAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQI 659
            I +F  + + + ++  I    + +P+ +Q+ A+ PIIKG RD++A AQ+G+GKT+   L +   + T                 R  Q   +L+L+PTRELA Q  +          ++     GG  +G+ IR LE G H++  TPGR+ DM++R  +     K LVLDE+D ML  GF+ QI
Sbjct:  177 IENFSDIDMGEIIMGNIELTRYTRPTPVQKHAI-PIIKGKRDLMACAQTGSGKTAAFLLPILSQIYTDGPGEALKAVKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQI 359          
BLAST of FC868508 vs. ExPASy Swiss-Prot
Match: DDX3Y_PANTR (ATP-dependent RNA helicase DDX3Y OS=Pan troglodytes GN=DDX3Y PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.611e-19
Identity = 62/184 (33.70%), Postives = 97/184 (52.72%), Query Frame = 3
Query:  165 ITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKG-RDVIAQAQSGTGKTSMIALTVCQTVDTSS---------------REVQ---ALILSPTRELATQTEKVVLAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQI 659
            I +F  + + + ++  I    + +P+ +Q+ A+ PIIKG RD++A AQ+G+GKT+   L +   + T                 R  Q   +L+L+PTRELA Q  +          ++     GG  +G+ IR LE G H++  TPGR+ DM++R  +     K LVLDE+D ML  GF+ QI
Sbjct:  177 IENFGDIDMGEIIMGNIQLTRYTRPTPVQKHAI-PIIKGKRDLMACAQTGSGKTAAFLLPILSQIYTDGPGEALKAVKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQI 359          
BLAST of FC868508 vs. ExPASy Swiss-Prot
Match: DDX3Y_HUMAN (ATP-dependent RNA helicase DDX3Y OS=Homo sapiens GN=DDX3Y PE=1 SV=2)

HSP 1 Score: 94.7449 bits (234), Expect = 4.611e-19
Identity = 62/184 (33.70%), Postives = 97/184 (52.72%), Query Frame = 3
Query:  165 ITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKG-RDVIAQAQSGTGKTSMIALTVCQTVDTSS---------------REVQ---ALILSPTRELATQTEKVVLAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQI 659
            I +F  + + + ++  I    + +P+ +Q+ A+ PIIKG RD++A AQ+G+GKT+   L +   + T                 R  Q   +L+L+PTRELA Q  +          ++     GG  +G+ IR LE G H++  TPGR+ DM++R  +     K LVLDE+D ML  GF+ QI
Sbjct:  177 IENFSDIDMGEIIMGNIELTRYTRPTPVQKHAI-PIIKGKRDLMACAQTGSGKTAAFLLPILSQIYTDGPGEALKAVKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQI 359          
BLAST of FC868508 vs. ExPASy Swiss-Prot
Match: DBP10_VANPO (ATP-dependent RNA helicase DBP10 OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294) GN=DBP10 PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.611e-19
Identity = 47/168 (27.98%), Postives = 96/168 (57.14%), Query Frame = 3
Query:  171 SFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREV--QALILSPTRELATQTEKVVLAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDV 668
            SF + G    +L  +++ GF +P+ IQ++ +  I++ RD++  A++G+GKT+   L + + + + S ++  +A+ILSP+RELA QT +V        ++++    GG S+ +    +     V+  TPGR   +    +L  + ++ +V DE+D +   GF++Q+ ++
Sbjct:  122 SFPSFGFSKLILSNVHKKGFRQPTPIQRKTIPLILQKRDIVGMARTGSGKTAAFVLPMIEKLKSHSSKIGARAVILSPSRELALQTHRVFKEFSKGTHLRSVLLTGGDSLEDQFSMMMSNPDVIVATPGRFLHLKVEMSLDLKTVEYVVFDEADRLFEMGFQEQLNEL 289          
BLAST of FC868508 vs. ExPASy Swiss-Prot
Match: DBP10_PICST (ATP-dependent RNA helicase DBP10 OS=Pichia stipitis GN=DBP10 PE=3 SV=2)

HSP 1 Score: 94.7449 bits (234), Expect = 4.611e-19
Identity = 52/168 (30.95%), Postives = 92/168 (54.76%), Query Frame = 3
Query:  171 SFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREV--QALILSPTRELATQTEKVVLAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDV 668
            SF + G+   +L  I + G+ +P+ IQ++ +  I+  RDV+  A++G+GKT+   L V + +   S  V  +A+ILSP+RELA QT K V       +++A    GG S+ +    +     +V  TPGR   +     L  + ++ +V DE+D +  +GF +Q+ ++
Sbjct:  100 SFQSFGLSKLVLTNIAKKGYRQPTPIQRKTIPLIMANRDVVGMARTGSGKTAAFTLPVIEKLKGHSARVGIRAIILSPSRELALQTYKQVKEFSKGSDLRAIVLTGGDSLEDQFSSMVSNPDIVIATPGRFLHLQVEMQLDLKTVEYIVFDEADHLFEQGFAEQLNEL 267          
BLAST of FC868508 vs. ExPASy Swiss-Prot
Match: SUB2_ASPNC (ATP-dependent RNA helicase sub2 OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=sub2 PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 6.022e-19
Identity = 57/174 (32.76%), Postives = 93/174 (53.45%), Query Frame = 3
Query:  168 TSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVVLAIGDFI-NIQAHACVGGKSVGEDIRKL---EHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSR-GFKDQIYDVYR 674
            T F    +K++LLR I   GFE PS +QQ  +   I   DV+ QA+SG GKT++  LT    ++    E   L++  TRELA Q +        ++ +++     GG  + +D+  L   E   ++V GTPGR+  +++ K L  R +K  VLDE D+ML +   +  + +++R
Sbjct:   57 TGFRDFLLKEELLRAITDCGFEHPSEVQQVCIPTAILNVDVLCQAKSGLGKTAVFVLTTLHQLEPVPGECSILVMCHTRELAYQIKNEYARFSKYLPDVKTAVFYGGTPIQKDVELLSNKESYPNIVVGTPGRLNALVRDKKLSLRNVKAFVLDECDKMLDQIDMRRDVQEIFR 230          
BLAST of FC868508 vs. ExPASy Swiss-Prot
Match: RH52_ARATH (DEAD-box ATP-dependent RNA helicase 52 OS=Arabidopsis thaliana GN=RH52 PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 6.022e-19
Identity = 56/175 (32.00%), Postives = 93/175 (53.14%), Query Frame = 3
Query:  165 ITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSS-----REVQ-----ALILSPTRELATQTEKVVLAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQI 659
            + +F  + + + L   I +  + KP+ +Q+ A+  +  GRD++A AQ+G+GKT+     +   +         R V+     A+ILSPTRELA Q             ++     GG  V + IR+LE GV ++  TPGR+ D+++R  +  + ++ L LDE+D ML  GF+ QI
Sbjct:  145 VNTFAEIDLGEALNLNIQRCKYVKPTPVQRNAIPILAAGRDLMACAQTGSGKTAAFCFPIISGIMKDQHIERPRGVRGVYPLAVILSPTRELACQIHDEARKFSYQTGVKVVVAYGGTPVNQQIRELERGVDILVATPGRLNDLLERGRVSLQMVRFLALDEADRMLDMGFEPQI 319          
The following BLAST results are available for this feature:
BLAST of FC868508 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
PRP5_NEOFI4.611e-1931.64Pre-mRNA-processing ATP-dependent RNA helicase prp... [more]
PRP5_COCIM4.611e-1931.64Pre-mRNA-processing ATP-dependent RNA helicase PRP... [more]
MAK5_EMENI4.611e-1932.26ATP-dependent RNA helicase mak5 OS=Emericella nidu... [more]
DDX3Y_PONAB4.611e-1933.70ATP-dependent RNA helicase DDX3Y OS=Pongo abelii G... [more]
DDX3Y_PANTR4.611e-1933.70ATP-dependent RNA helicase DDX3Y OS=Pan troglodyte... [more]
DDX3Y_HUMAN4.611e-1933.70ATP-dependent RNA helicase DDX3Y OS=Homo sapiens G... [more]
DBP10_VANPO4.611e-1927.98ATP-dependent RNA helicase DBP10 OS=Vanderwaltozym... [more]
DBP10_PICST4.611e-1930.95ATP-dependent RNA helicase DBP10 OS=Pichia stipiti... [more]
SUB2_ASPNC6.022e-1932.76ATP-dependent RNA helicase sub2 OS=Aspergillus nig... [more]
RH52_ARATH6.022e-1932.00DEAD-box ATP-dependent RNA helicase 52 OS=Arabidop... [more]

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Properties
Property NameValue
Genbank descriptionC31001C05EF AbioticL1 Citrus clementina cDNA clone C31001C05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868508 ID=FC868508; Name=FC868508; organism=Citrus clementina; type=EST; length=677bp
GCTCACCTGGAAGAGGAAACTCTCATTGATTCTTTGATTTCGAAGAGTAA
TTGTTGCGAATTTCGTGCGAGATGGCGGCGGCGACGGCTATGCGGAGGAG
AGGAGGGGGCGGCGGAATGGATGACGACAAGATGGTGTTCGAAACAACGG
AAGGAGTGGAGGCAATCACGAGCTTCGACGCAATGGGAATAAAAGACGAT
CTGTTGCGTGGAATTTATCAGTACGGATTCGAGAAGCCATCGGCCATACA
ACAGAGGGCCGTTATGCCGATTATAAAGGGCCGTGATGTAATTGCACAGG
CCCAGTCTGGTACTGGCAAGACCTCTATGATTGCCCTAACTGTTTGCCAG
ACGGTCGATACTTCTAGCAGAGAGGTGCAGGCGTTGATTTTGTCACCTAC
GAGGGAGCTGGCGACGCAGACAGAGAAAGTGGTTTTGGCAATTGGTGATT
TTATTAACATACAAGCACATGCGTGTGTTGGAGGCAAAAGTGTCGGGGAA
GATATTAGGAAGTTAGAGCATGGAGTTCATGTGGTGTCTGGAACTCCGGG
TAGAGTCTGTGATATGATTAAGAGGAAAACTTTGCGTACTAGAGCTATTA
AATTATTGGTGCTTGATGAGTCTGATGAGATGCTGAGCAGAGGGTTCAAG
GATCAAATTTATGATGTGTACCGTTAT
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