FC868508

Overview
NameFC868508
Unique NameFC868508
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length677
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868508 vs. ExPASy Swiss-Prot
Match: RH28_ARATH (DEAD-box ATP-dependent RNA helicase 28 OS=Arabidopsis thaliana GN=RH28 PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 6.022e-19
Identity = 62/187 (33.16%), Postives = 98/187 (52.41%), Query Frame = 3
Query:  129 KMVFETTEGVEA-ITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQA---LILSPTRELATQTEKVVLAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRK-TLRTRAIKLLVLDESDEMLSRGFKDQIYDVYR 674
            K  F T +GV     +F  + +   LLR     G++KP+ IQ   +   + GRD+ A A +G+GKT+  AL   + +    + V A   LIL+PTRELA Q   ++  +  F +I+    VGG SV E    L     +V  TPGR+ D ++   ++    + +L+LDE+D +L  GF  +I ++ R
Sbjct:  153 KPFFSTVDGVSFHADTFMELNLSRPLLRACETLGYKKPTPIQAACIPLALTGRDLCASAITGSGKTAAFALPTLERLLFRPKRVFATRVLILTPTRELAVQIHSMIQNLAQFTDIKCGLIVGGLSVREQEVVLRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLQTGFATEITELVR 339          
BLAST of FC868508 vs. ExPASy Swiss-Prot
Match: PRP28_CANAL (Pre-mRNA-splicing ATP-dependent RNA helicase PRP28 OS=Candida albicans GN=PRP28 PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 6.022e-19
Identity = 57/171 (33.33%), Postives = 90/171 (52.63%), Query Frame = 3
Query:  189 IKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTV----------DTSSREVQALILSPTRELATQTEKVVLAIGDFINIQAHACVGGKSVGEDIRKLEH-GVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDV 668
            I D L+  I Q G+E+P+++Q+ ++   +K RDV+  A++G+GKT    + V   +          +  S E   LIL+PTRELA Q  K        +  Q    +GG    + I K++  GVH++  TPGR+ D I+RK +       LV+DE+D M+  GF+  +  V
Sbjct:  175 INDKLVSIISQLGYEEPTSVQRASIPLALKKRDVVGVAETGSGKTLAFLIPVLNYILSIDENYLKYEKISNEPVGLILAPTRELALQITKEAEKFCKKLGYQVLPIIGGHHYQDTINKIDQTGVHLIVATPGRLVDSIERKIVDLSKCYCLVMDEADRMIDMGFEKDLNKV 345          
BLAST of FC868508 vs. ExPASy Swiss-Prot
Match: DDX4_RANLE (Probable ATP-dependent RNA helicase DDX4 OS=Rana lessonae GN=ddx4 PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 6.022e-19
Identity = 52/180 (28.89%), Postives = 103/180 (57.22%), Query Frame = 3
Query:  162 AITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVC-----QTVDTSS----REVQALILSPTRELATQTEKVVLAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYR 674
            AI +F+   + D L + + + G+ K + IQ+ ++  I+ GRD++A AQ+G+GKT+   L +      + V++S+    +E +A+I++PTREL  Q             ++     GG  +   ++++  G +++  TPGR+ D+I+++ +    ++ LVLDE+D ML  GF++ I ++ +
Sbjct:  284 AILTFEEANLCDSLAKNVCKSGYVKLTPIQKHSIPIIVAGRDLMACAQTGSGKTAAFLLPILAHLMVKGVESSAFQTLKEPEAIIVAPTRELINQIYLDARKFSYGTCVRPVVIYGGTQMFHSLKQISEGCNILCATPGRLLDVIRKEKIGLTKLRYLVLDEADRMLDMGFREDIENLLK 463          
BLAST of FC868508 vs. ExPASy Swiss-Prot
Match: DBP10_ASHGO (ATP-dependent RNA helicase DBP10 OS=Ashbya gossypii GN=DBP10 PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 6.022e-19
Identity = 50/168 (29.76%), Postives = 93/168 (55.36%), Query Frame = 3
Query:  171 SFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREV--QALILSPTRELATQTEKVVLAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDV 668
            SF + G+   +L  I + GF +P+ IQ++ +  I++ RD++  A++G+GKT+   L + + +   S ++  +A+ILSP+RELA QT KV        N+++    GG  + +    +     V+  TPGR   +     L   +I+ +V DE+D +   GF++Q+ ++
Sbjct:  121 SFASFGLSKFILGNISRKGFRQPTPIQRKTIPLILQQRDIVGMARTGSGKTAAFVLPLIEKLKMHSAKIGARAMILSPSRELAMQTHKVFKEFAKGSNLRSVLLTGGDGLEDQFSMMMSNPDVIIATPGRFLHLKVEMNLDLHSIEYVVFDEADRLFEMGFQEQLNEL 288          
BLAST of FC868508 vs. ExPASy Swiss-Prot
Match: SUB2_ASPFU (ATP-dependent RNA helicase sub2 OS=Aspergillus fumigatus GN=sub2 PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 7.865e-19
Identity = 57/162 (35.19%), Postives = 86/162 (53.09%), Query Frame = 3
Query:  168 TSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVVLAIGDFI-NIQAHACVGGKSVGEDIRKL---EHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSR 641
            T F    +K +LLR I   GFE PS +QQ  +   I   DV+ QA+SG GKT++  LT    ++    E   L++  TRELA Q +        ++ +++     GG  + +DI  L   E   ++V GTPGR+  +++ K L  R +K  VLDE D+ML +
Sbjct:   58 TGFRDFLLKGELLRAITDCGFEHPSEVQQVCIPTAILNVDVLCQAKSGLGKTAVFVLTTLHQLEPVPGECSVLVMCHTRELAYQIKNEYARFSKYLPDVKTAVFYGGTPIQKDIEVLSNKESYPNIVVGTPGRLNALVREKKLSLRNVKAFVLDECDKMLDQ 219          
BLAST of FC868508 vs. ExPASy Swiss-Prot
Match: SUB21_VANPO (ATP-dependent RNA helicase SUB2-1 OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294) GN=SUB2-1 PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 7.865e-19
Identity = 54/174 (31.03%), Postives = 90/174 (51.72%), Query Frame = 3
Query:  168 TSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVVLAIGDFI-NIQAHACVGGKSVGED---IRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSR-GFKDQIYDVYR 674
            T F    +K +L R I   GFE PS +QQ  +   I G DV+ QA+SG GKT++  L+  Q +D    EV  +++   RELA Q     L    ++ +++     GG  + +D   ++  E   H+V  TPGR+  +++ K +    +K  V+DE D++L     +  + D++R
Sbjct:   57 TGFKDFLLKPELARAIIDCGFEHPSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTLQQLDPVPGEVSVVVICNARELAYQIRNEYLRFSKYMPDVKTAVFYGGTPINKDAELLKNKETAPHIVVATPGRLKALVRDKLIDLSHVKNFVIDECDKVLEELDMRRDVQDIFR 230          
BLAST of FC868508 vs. ExPASy Swiss-Prot
Match: HAS1_CANGA (ATP-dependent RNA helicase HAS1 OS=Candida glabrata GN=HAS1 PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 7.865e-19
Identity = 53/173 (30.64%), Postives = 98/173 (56.65%), Query Frame = 3
Query:  171 SFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQ----ALILSPTRELATQTEKVVLAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKR-KTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYR 674
            SF ++ +    +R I + GF K + +Q R + P++ GRDV+  A++G+GKT    L   + + +   + +     +I++PTRELA Q   VV  + +F +      +GG +  ++  KL  GV+++  TPGR+ D ++  K    + +K LV+DE+D +L  GF+D++  + +
Sbjct:   30 SFKSLNLSQPTMRAIEKMGFSKMTPVQARTIPPLMAGRDVLGAAKTGSGKTLAFLLPTIELLHSLKFKPRNGTGVIIITPTRELALQIFGVVRELMEFHSQTFGIVIGGANRRQEAEKLMKGVNLLVATPGRLLDHLQNTKGFIFKNLKALVIDEADRILEIGFEDEMRQIIK 202          
BLAST of FC868508 vs. ExPASy Swiss-Prot
Match: DRS1_CANGA (ATP-dependent RNA helicase DRS1 OS=Candida glabrata GN=DRS1 PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 7.865e-19
Identity = 53/175 (30.29%), Postives = 99/175 (56.57%), Query Frame = 3
Query:  159 EAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREV---QALILSPTRELATQTEKVVLAIGDFI-NIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRK-TLRTRAIKLLVLDESDEMLSRGFKDQIYDV 668
            E   +F+ + +   +++G+   G+ KPS IQ   +   + G+D+IA A +G+GKT+   + + + +     +V   + ++L+PTRELA Q   V   IG F+ N+     VGG ++ +  + L+    +V  TPGR  D I+   +    ++++LV+DE+D ML  GF+D++ ++
Sbjct:  203 EVHKTFNDLALSRPVMKGLSNLGYVKPSPIQSATIPIALLGKDIIAGAVTGSGKTAAFMIPIIERLLYKPAKVASTRVIVLTPTRELAIQVADVGKKIGQFVSNLTFGLAVGGLNLRQQEQMLKTRPDIVIATPGRFIDHIRNSASFNVDSVEVLVIDEADRMLEDGFQDELNEI 377          
BLAST of FC868508 vs. ExPASy Swiss-Prot
Match: DRS1_ASHGO (ATP-dependent RNA helicase DRS1 OS=Ashbya gossypii GN=DRS1 PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 7.865e-19
Identity = 56/184 (30.43%), Postives = 104/184 (56.52%), Query Frame = 3
Query:  144 TTEGVEAI----TSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTV---DTSSREVQALILSPTRELATQTEKVVLAIGDFIN-IQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRK-TLRTRAIKLLVLDESDEMLSRGFKDQIYDV 668
            + EG EA     ++F+++ +   +L+G+   G+ KPS IQ   +   + G+DVIA A +G+GKT+   + + + +          + L+L+PTRELA Q   V   +G F++ +     VGG ++ +  + L+    +V  TPGR+ D I+   +    ++++LV+DE+D ML  GF+D++ ++
Sbjct:  207 SNEGEEAKNVVHSTFNSLSLSRPVLKGLAALGYTKPSPIQGATIPIALLGKDVIAGAVTGSGKTAAFMIPIIERLLYKPAKIASTRVLVLTPTRELAIQVADVGKKLGKFVSGLTFGLAVGGLNLRQQEQALKLRPDIVIATPGRIIDHIRNSASFSVDSVEVLVIDEADRMLEDGFQDELNEI 390          
BLAST of FC868508 vs. ExPASy Swiss-Prot
Match: DDX46_DICDI (ATP-dependent RNA helicase ddx46 OS=Dictyostelium discoideum GN=helB1 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 7.865e-19
Identity = 57/173 (32.95%), Postives = 90/173 (52.02%), Query Frame = 3
Query:  165 ITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTV-----CQTVDTSSREVQALILSPTRELATQTEKVVLAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMI---KRKTLRTRAIKLLVLDESDEMLSRGFKDQI 659
            I S+   G+ + +   + ++ +EKP++IQ + +  I+ GRD+I  A++G+GKT    L +      Q        + ALI+SPTRELA Q           + ++     GG S+ E I +L+ G  +V  TPGR+ D++    R+    R +  LVLDE+D M   GF  QI
Sbjct:  508 IQSWAQAGLTEKVHLLLKKFQYEKPTSIQAQTIPAIMNGRDLIGIARTGSGKTLAFLLPMFRHILAQPKSAPGEGMIALIMSPTRELALQIHVECKKFSKVLGLRTACVYGGASISEQIAELKRGADIVVCTPGRMIDILCANNRRITNLRRVTFLVLDEADRMFDMGFGPQI 680          
The following BLAST results are available for this feature:
BLAST of FC868508 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RH28_ARATH6.022e-1933.16DEAD-box ATP-dependent RNA helicase 28 OS=Arabidop... [more]
PRP28_CANAL6.022e-1933.33Pre-mRNA-splicing ATP-dependent RNA helicase PRP28... [more]
DDX4_RANLE6.022e-1928.89Probable ATP-dependent RNA helicase DDX4 OS=Rana l... [more]
DBP10_ASHGO6.022e-1929.76ATP-dependent RNA helicase DBP10 OS=Ashbya gossypi... [more]
SUB2_ASPFU7.865e-1935.19ATP-dependent RNA helicase sub2 OS=Aspergillus fum... [more]
SUB21_VANPO7.865e-1931.03ATP-dependent RNA helicase SUB2-1 OS=Vanderwaltozy... [more]
HAS1_CANGA7.865e-1930.64ATP-dependent RNA helicase HAS1 OS=Candida glabrat... [more]
DRS1_CANGA7.865e-1930.29ATP-dependent RNA helicase DRS1 OS=Candida glabrat... [more]
DRS1_ASHGO7.865e-1930.43ATP-dependent RNA helicase DRS1 OS=Ashbya gossypii... [more]
DDX46_DICDI7.865e-1932.95ATP-dependent RNA helicase ddx46 OS=Dictyostelium ... [more]

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Properties
Property NameValue
Genbank descriptionC31001C05EF AbioticL1 Citrus clementina cDNA clone C31001C05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868508 ID=FC868508; Name=FC868508; organism=Citrus clementina; type=EST; length=677bp
GCTCACCTGGAAGAGGAAACTCTCATTGATTCTTTGATTTCGAAGAGTAA
TTGTTGCGAATTTCGTGCGAGATGGCGGCGGCGACGGCTATGCGGAGGAG
AGGAGGGGGCGGCGGAATGGATGACGACAAGATGGTGTTCGAAACAACGG
AAGGAGTGGAGGCAATCACGAGCTTCGACGCAATGGGAATAAAAGACGAT
CTGTTGCGTGGAATTTATCAGTACGGATTCGAGAAGCCATCGGCCATACA
ACAGAGGGCCGTTATGCCGATTATAAAGGGCCGTGATGTAATTGCACAGG
CCCAGTCTGGTACTGGCAAGACCTCTATGATTGCCCTAACTGTTTGCCAG
ACGGTCGATACTTCTAGCAGAGAGGTGCAGGCGTTGATTTTGTCACCTAC
GAGGGAGCTGGCGACGCAGACAGAGAAAGTGGTTTTGGCAATTGGTGATT
TTATTAACATACAAGCACATGCGTGTGTTGGAGGCAAAAGTGTCGGGGAA
GATATTAGGAAGTTAGAGCATGGAGTTCATGTGGTGTCTGGAACTCCGGG
TAGAGTCTGTGATATGATTAAGAGGAAAACTTTGCGTACTAGAGCTATTA
AATTATTGGTGCTTGATGAGTCTGATGAGATGCTGAGCAGAGGGTTCAAG
GATCAAATTTATGATGTGTACCGTTAT
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