FC868508
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC868508 vs. ExPASy Swiss-Prot
Match: RH28_ARATH (DEAD-box ATP-dependent RNA helicase 28 OS=Arabidopsis thaliana GN=RH28 PE=2 SV=1) HSP 1 Score: 94.3597 bits (233), Expect = 6.022e-19 Identity = 62/187 (33.16%), Postives = 98/187 (52.41%), Query Frame = 3 Query: 129 KMVFETTEGVEA-ITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQA---LILSPTRELATQTEKVVLAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRK-TLRTRAIKLLVLDESDEMLSRGFKDQIYDVYR 674 K F T +GV +F + + LLR G++KP+ IQ + + GRD+ A A +G+GKT+ AL + + + V A LIL+PTRELA Q ++ + F +I+ VGG SV E L +V TPGR+ D ++ ++ + +L+LDE+D +L GF +I ++ R Sbjct: 153 KPFFSTVDGVSFHADTFMELNLSRPLLRACETLGYKKPTPIQAACIPLALTGRDLCASAITGSGKTAAFALPTLERLLFRPKRVFATRVLILTPTRELAVQIHSMIQNLAQFTDIKCGLIVGGLSVREQEVVLRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLQTGFATEITELVR 339
BLAST of FC868508 vs. ExPASy Swiss-Prot
Match: PRP28_CANAL (Pre-mRNA-splicing ATP-dependent RNA helicase PRP28 OS=Candida albicans GN=PRP28 PE=3 SV=1) HSP 1 Score: 94.3597 bits (233), Expect = 6.022e-19 Identity = 57/171 (33.33%), Postives = 90/171 (52.63%), Query Frame = 3 Query: 189 IKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTV----------DTSSREVQALILSPTRELATQTEKVVLAIGDFINIQAHACVGGKSVGEDIRKLEH-GVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDV 668 I D L+ I Q G+E+P+++Q+ ++ +K RDV+ A++G+GKT + V + + S E LIL+PTRELA Q K + Q +GG + I K++ GVH++ TPGR+ D I+RK + LV+DE+D M+ GF+ + V Sbjct: 175 INDKLVSIISQLGYEEPTSVQRASIPLALKKRDVVGVAETGSGKTLAFLIPVLNYILSIDENYLKYEKISNEPVGLILAPTRELALQITKEAEKFCKKLGYQVLPIIGGHHYQDTINKIDQTGVHLIVATPGRLVDSIERKIVDLSKCYCLVMDEADRMIDMGFEKDLNKV 345
BLAST of FC868508 vs. ExPASy Swiss-Prot
Match: DDX4_RANLE (Probable ATP-dependent RNA helicase DDX4 OS=Rana lessonae GN=ddx4 PE=2 SV=1) HSP 1 Score: 94.3597 bits (233), Expect = 6.022e-19 Identity = 52/180 (28.89%), Postives = 103/180 (57.22%), Query Frame = 3 Query: 162 AITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVC-----QTVDTSS----REVQALILSPTRELATQTEKVVLAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYR 674 AI +F+ + D L + + + G+ K + IQ+ ++ I+ GRD++A AQ+G+GKT+ L + + V++S+ +E +A+I++PTREL Q ++ GG + ++++ G +++ TPGR+ D+I+++ + ++ LVLDE+D ML GF++ I ++ + Sbjct: 284 AILTFEEANLCDSLAKNVCKSGYVKLTPIQKHSIPIIVAGRDLMACAQTGSGKTAAFLLPILAHLMVKGVESSAFQTLKEPEAIIVAPTRELINQIYLDARKFSYGTCVRPVVIYGGTQMFHSLKQISEGCNILCATPGRLLDVIRKEKIGLTKLRYLVLDEADRMLDMGFREDIENLLK 463
BLAST of FC868508 vs. ExPASy Swiss-Prot
Match: DBP10_ASHGO (ATP-dependent RNA helicase DBP10 OS=Ashbya gossypii GN=DBP10 PE=3 SV=1) HSP 1 Score: 94.3597 bits (233), Expect = 6.022e-19 Identity = 50/168 (29.76%), Postives = 93/168 (55.36%), Query Frame = 3 Query: 171 SFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREV--QALILSPTRELATQTEKVVLAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDV 668 SF + G+ +L I + GF +P+ IQ++ + I++ RD++ A++G+GKT+ L + + + S ++ +A+ILSP+RELA QT KV N+++ GG + + + V+ TPGR + L +I+ +V DE+D + GF++Q+ ++ Sbjct: 121 SFASFGLSKFILGNISRKGFRQPTPIQRKTIPLILQQRDIVGMARTGSGKTAAFVLPLIEKLKMHSAKIGARAMILSPSRELAMQTHKVFKEFAKGSNLRSVLLTGGDGLEDQFSMMMSNPDVIIATPGRFLHLKVEMNLDLHSIEYVVFDEADRLFEMGFQEQLNEL 288
BLAST of FC868508 vs. ExPASy Swiss-Prot
Match: SUB2_ASPFU (ATP-dependent RNA helicase sub2 OS=Aspergillus fumigatus GN=sub2 PE=3 SV=1) HSP 1 Score: 93.9745 bits (232), Expect = 7.865e-19 Identity = 57/162 (35.19%), Postives = 86/162 (53.09%), Query Frame = 3 Query: 168 TSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVVLAIGDFI-NIQAHACVGGKSVGEDIRKL---EHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSR 641 T F +K +LLR I GFE PS +QQ + I DV+ QA+SG GKT++ LT ++ E L++ TRELA Q + ++ +++ GG + +DI L E ++V GTPGR+ +++ K L R +K VLDE D+ML + Sbjct: 58 TGFRDFLLKGELLRAITDCGFEHPSEVQQVCIPTAILNVDVLCQAKSGLGKTAVFVLTTLHQLEPVPGECSVLVMCHTRELAYQIKNEYARFSKYLPDVKTAVFYGGTPIQKDIEVLSNKESYPNIVVGTPGRLNALVREKKLSLRNVKAFVLDECDKMLDQ 219
BLAST of FC868508 vs. ExPASy Swiss-Prot
Match: SUB21_VANPO (ATP-dependent RNA helicase SUB2-1 OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294) GN=SUB2-1 PE=3 SV=1) HSP 1 Score: 93.9745 bits (232), Expect = 7.865e-19 Identity = 54/174 (31.03%), Postives = 90/174 (51.72%), Query Frame = 3 Query: 168 TSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVVLAIGDFI-NIQAHACVGGKSVGED---IRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSR-GFKDQIYDVYR 674 T F +K +L R I GFE PS +QQ + I G DV+ QA+SG GKT++ L+ Q +D EV +++ RELA Q L ++ +++ GG + +D ++ E H+V TPGR+ +++ K + +K V+DE D++L + + D++R Sbjct: 57 TGFKDFLLKPELARAIIDCGFEHPSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTLQQLDPVPGEVSVVVICNARELAYQIRNEYLRFSKYMPDVKTAVFYGGTPINKDAELLKNKETAPHIVVATPGRLKALVRDKLIDLSHVKNFVIDECDKVLEELDMRRDVQDIFR 230
BLAST of FC868508 vs. ExPASy Swiss-Prot
Match: HAS1_CANGA (ATP-dependent RNA helicase HAS1 OS=Candida glabrata GN=HAS1 PE=3 SV=1) HSP 1 Score: 93.9745 bits (232), Expect = 7.865e-19 Identity = 53/173 (30.64%), Postives = 98/173 (56.65%), Query Frame = 3 Query: 171 SFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQ----ALILSPTRELATQTEKVVLAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKR-KTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYR 674 SF ++ + +R I + GF K + +Q R + P++ GRDV+ A++G+GKT L + + + + + +I++PTRELA Q VV + +F + +GG + ++ KL GV+++ TPGR+ D ++ K + +K LV+DE+D +L GF+D++ + + Sbjct: 30 SFKSLNLSQPTMRAIEKMGFSKMTPVQARTIPPLMAGRDVLGAAKTGSGKTLAFLLPTIELLHSLKFKPRNGTGVIIITPTRELALQIFGVVRELMEFHSQTFGIVIGGANRRQEAEKLMKGVNLLVATPGRLLDHLQNTKGFIFKNLKALVIDEADRILEIGFEDEMRQIIK 202
BLAST of FC868508 vs. ExPASy Swiss-Prot
Match: DRS1_CANGA (ATP-dependent RNA helicase DRS1 OS=Candida glabrata GN=DRS1 PE=3 SV=1) HSP 1 Score: 93.9745 bits (232), Expect = 7.865e-19 Identity = 53/175 (30.29%), Postives = 99/175 (56.57%), Query Frame = 3 Query: 159 EAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREV---QALILSPTRELATQTEKVVLAIGDFI-NIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRK-TLRTRAIKLLVLDESDEMLSRGFKDQIYDV 668 E +F+ + + +++G+ G+ KPS IQ + + G+D+IA A +G+GKT+ + + + + +V + ++L+PTRELA Q V IG F+ N+ VGG ++ + + L+ +V TPGR D I+ + ++++LV+DE+D ML GF+D++ ++ Sbjct: 203 EVHKTFNDLALSRPVMKGLSNLGYVKPSPIQSATIPIALLGKDIIAGAVTGSGKTAAFMIPIIERLLYKPAKVASTRVIVLTPTRELAIQVADVGKKIGQFVSNLTFGLAVGGLNLRQQEQMLKTRPDIVIATPGRFIDHIRNSASFNVDSVEVLVIDEADRMLEDGFQDELNEI 377
BLAST of FC868508 vs. ExPASy Swiss-Prot
Match: DRS1_ASHGO (ATP-dependent RNA helicase DRS1 OS=Ashbya gossypii GN=DRS1 PE=3 SV=1) HSP 1 Score: 93.9745 bits (232), Expect = 7.865e-19 Identity = 56/184 (30.43%), Postives = 104/184 (56.52%), Query Frame = 3 Query: 144 TTEGVEAI----TSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTV---DTSSREVQALILSPTRELATQTEKVVLAIGDFIN-IQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRK-TLRTRAIKLLVLDESDEMLSRGFKDQIYDV 668 + EG EA ++F+++ + +L+G+ G+ KPS IQ + + G+DVIA A +G+GKT+ + + + + + L+L+PTRELA Q V +G F++ + VGG ++ + + L+ +V TPGR+ D I+ + ++++LV+DE+D ML GF+D++ ++ Sbjct: 207 SNEGEEAKNVVHSTFNSLSLSRPVLKGLAALGYTKPSPIQGATIPIALLGKDVIAGAVTGSGKTAAFMIPIIERLLYKPAKIASTRVLVLTPTRELAIQVADVGKKLGKFVSGLTFGLAVGGLNLRQQEQALKLRPDIVIATPGRIIDHIRNSASFSVDSVEVLVIDEADRMLEDGFQDELNEI 390
BLAST of FC868508 vs. ExPASy Swiss-Prot
Match: DDX46_DICDI (ATP-dependent RNA helicase ddx46 OS=Dictyostelium discoideum GN=helB1 PE=2 SV=1) HSP 1 Score: 93.9745 bits (232), Expect = 7.865e-19 Identity = 57/173 (32.95%), Postives = 90/173 (52.02%), Query Frame = 3 Query: 165 ITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTV-----CQTVDTSSREVQALILSPTRELATQTEKVVLAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMI---KRKTLRTRAIKLLVLDESDEMLSRGFKDQI 659 I S+ G+ + + + ++ +EKP++IQ + + I+ GRD+I A++G+GKT L + Q + ALI+SPTRELA Q + ++ GG S+ E I +L+ G +V TPGR+ D++ R+ R + LVLDE+D M GF QI Sbjct: 508 IQSWAQAGLTEKVHLLLKKFQYEKPTSIQAQTIPAIMNGRDLIGIARTGSGKTLAFLLPMFRHILAQPKSAPGEGMIALIMSPTRELALQIHVECKKFSKVLGLRTACVYGGASISEQIAELKRGADIVVCTPGRMIDILCANNRRITNLRRVTFLVLDEADRMFDMGFGPQI 680 The following BLAST results are available for this feature:
BLAST of FC868508 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >FC868508 ID=FC868508; Name=FC868508; organism=Citrus clementina; type=EST; length=677bpback to top |