FC868508
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC868508 vs. ExPASy Swiss-Prot
Match: PRP28_DEBHA (Pre-mRNA-splicing ATP-dependent RNA helicase PRP28 OS=Debaryomyces hansenii GN=PRP28 PE=3 SV=2) HSP 1 Score: 93.5893 bits (231), Expect = 1.027e-18 Identity = 48/169 (28.40%), Postives = 85/169 (50.30%), Query Frame = 3 Query: 213 IYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTV--------------DTSSREVQALILSPTRELATQTEKVVLAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRY 677 I G++ P+ IQ+ ++ + GRD++ A++G+GKT L + + +++ + LIL+PTRELA Q K GD +N+ +GG E + + +GVH+V TPGR+ D ++R + +DE+D+M+ GF+ + + Y Sbjct: 170 IKNLGYDSPTPIQRASIPLALNGRDIVGIAETGSGKTLAFLLPLFSYILSVDSNYLLYEHQQESNFNKPLGLILAPTRELALQITKEAKLFGDKLNLNVVTIIGGHQYEETVHSVRNGVHIVVATPGRLIDSLERGIINLSNCYFFTMDEADKMIDMGFEKSLQSILNY 338
BLAST of FC868508 vs. ExPASy Swiss-Prot
Match: PRP11_SCHPO (Pre-mRNA-processing ATP-dependent RNA helicase prp11 OS=Schizosaccharomyces pombe GN=prp11 PE=2 SV=1) HSP 1 Score: 93.5893 bits (231), Expect = 1.027e-18 Identity = 57/173 (32.95%), Postives = 90/173 (52.02%), Query Frame = 3 Query: 165 ITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVD-----TSSREVQALILSPTRELATQTEKVVLAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAI---KLLVLDESDEMLSRGFKDQI 659 +TS+ G+ + I G+EKP++IQ +A+ I GRDVI A++G+GKT L + + + + A+I++PTRELA Q + +NI+A GG + + I L+ G +V TPGR+ D++ R + LVLDE+D M GF+ Q+ Sbjct: 417 VTSWSQCGLSAQTISVINSLGYEKPTSIQAQAIPAITSGRDVIGVAKTGSGKTIAFLLPMFRHIKDQRPLKTGEGPIAIIMTPTRELAVQIFRECKPFLKLLNIRACCAYGGAPIKDQIADLKRGAEIVVCTPGRMIDVLSANAGRVTNLHRCTYLVLDEADRMFDLGFEPQV 589
BLAST of FC868508 vs. ExPASy Swiss-Prot
Match: MAK5_MAGGR (ATP-dependent RNA helicase MAK5 OS=Magnaporthe grisea GN=MAK5 PE=3 SV=1) HSP 1 Score: 93.5893 bits (231), Expect = 1.027e-18 Identity = 64/190 (33.68%), Postives = 102/190 (53.68%), Query Frame = 3 Query: 141 ETTEGVEAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQ-----TVDTSSREVQ--------ALILSPTRELATQTEKVVLAIGDFINIQAHAC--VGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKT---LRTRAIKLLVLDESDEMLSRG-FKD 653 ET EG + ++ ++ +G+ ++++ I + F KP+AIQ + I+ G DV+ +A +G+GKT + + + T S+ V AL+LSPTRELA Q + + + + C GG SV + R+LE +V GTPGR+ +++ T R IK LV+DE+D +LS G FKD Sbjct: 204 ETDEGAD-VSEWEPLGLSEEIMSSIAKLKFAKPTAIQAATIPEILAGHDVVGKASTGSGKTLAFGIPIVEKWLSINASTQSKRVAEGETKTPIALVLSPTRELAHQLTDHIKNLCAGLATSPYVCSVTGGLSVHKQQRQLEK-ADIVVGTPGRLWEVLSSSTKLIQAFRGIKFLVVDEADRLLSEGHFKD 391
BLAST of FC868508 vs. ExPASy Swiss-Prot
Match: DRS1_BOTFB (ATP-dependent RNA helicase drs1 OS=Botryotinia fuckeliana (strain B05.10) GN=drs1 PE=3 SV=1) HSP 1 Score: 93.5893 bits (231), Expect = 1.027e-18 Identity = 55/174 (31.61%), Postives = 93/174 (53.45%), Query Frame = 3 Query: 159 EAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREV---QALILSPTRELATQTEKVVLAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRK-TLRTRAIKLLVLDESDEMLSRGFKDQIYDV 668 E T+F +M + +LRG+ GF +P+ IQ + + + G+DV+ A +G+GKT+ + V + + ++V + IL PTRELA Q V + +I+ VGG S+ +L V+ TPGR D ++ + +++LVLDE+D ML GF D++ ++ Sbjct: 265 ELNTTFQSMSLSRPILRGLATVGFTQPTPIQSKTIPVALLGKDVVGGAVTGSGKTAAFVVPVLERLLYRPKKVPTSRVAILMPTRELAIQCHAVATKLASHTDIKFCLAVGGLSLKVQEAELRLRPDVIIATPGRFIDHMRNSPSFTVDTLEILVLDEADRMLEAGFADELNEI 438
BLAST of FC868508 vs. ExPASy Swiss-Prot
Match: DBP8_NEUCR (ATP-dependent RNA helicase dbp-8 OS=Neurospora crassa GN=dbp-8 PE=3 SV=1) HSP 1 Score: 93.5893 bits (231), Expect = 1.027e-18 Identity = 53/165 (32.12%), Postives = 93/165 (56.36%), Query Frame = 3 Query: 156 VEAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVVLAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRT----RAIKLLVLDESDEMLS 638 ++A T+FDA+ ++ L++ + ++P+ IQ+ + I+KGRD I +++G+GKT A+ + Q + + +IL+PTRELA Q + V+A+ ++A GG + + L H+V TPGR+ D I+ T R +K +VLDE+D +L+ Sbjct: 191 IDANTTFDALNVRPWLVQSLANMAIKRPTGIQKGCIPEILKGRDCIGGSRTGSGKTVAFAVPILQQWAANPSAIFGVILTPTRELALQIMEQVIALSQPHVLKAVLITGGADMRKQAIDLAKRPHLVIATPGRLADHIRTSGEDTICGLRRVKFIVLDEADRLLA 355
BLAST of FC868508 vs. ExPASy Swiss-Prot
Match: DBP4_DEBHA (ATP-dependent RNA helicase DBP4 OS=Debaryomyces hansenii GN=DBP4 PE=3 SV=2) HSP 1 Score: 93.5893 bits (231), Expect = 1.027e-18 Identity = 56/175 (32.00%), Postives = 98/175 (56.00%), Query Frame = 3 Query: 159 EAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTV----DTSSREVQALILSPTRELATQTEKVVLAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKT-LRTRAIKLLVLDESDEMLSRGFKDQIYDV 668 ++I+ F + I ++ RG+ + F + IQ++ + +KG DV+ A++G+GKT + +++ T + ALI+SPTRELA Q +V++ IG N A GGK V + ++ ++++ GTPGR+ + + T +++LVLDE+D L GFK QI ++ Sbjct: 43 KSISQFSDLPISEETARGLKEASFASLTDIQKKTIPISLKGEDVMGTAKTGSGKTLAFLIPTIESLIRNKITEYDGLAALIISPTRELAVQIFEVLVKIGKHNNFSAGLVTGGKDVKYEKERVSK-MNILVGTPGRISQHLNESVGMETSNLQVLVLDEADRCLDMGFKKQIDNI 216
BLAST of FC868508 vs. ExPASy Swiss-Prot
Match: Y425_MYCGE (Probable ATP-dependent RNA helicase MG425 OS=Mycoplasma genitalium GN=MG425 PE=3 SV=1) HSP 1 Score: 93.2041 bits (230), Expect = 1.342e-18 Identity = 47/168 (27.98%), Postives = 94/168 (55.95%), Query Frame = 3 Query: 168 TSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQ-ALILSPTRELATQTEKVVLAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDV 668 ++F +GI L+ + KP+ IQQ ++ + +++I + +GTGKT+ A+ + + + + + L+++PTREL Q + I ++ + +GG + I+K++ ++ GT GR+ D+++RK + ++ L++DE D ML RGFK QI+++ Sbjct: 3 STFHELGISQTLIETLNALHINKPTKIQQISIPQFLSEKNLIVHSPTGTGKTAAFAIPIIEKLLKEDQTAKPTLVIAPTRELVEQIKTTFSNIAKNKKLRIISLIGGVPAWKQIKKIKTNPQIIVGTMGRIMDLLERKAIHFSDLEHLIIDEVDLMLDRGFKKQIFNL 170
BLAST of FC868508 vs. ExPASy Swiss-Prot
Match: SUB22_VANPO (ATP-dependent RNA helicase SUB2-2 OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294) GN=SUB2-2 PE=3 SV=1) HSP 1 Score: 93.2041 bits (230), Expect = 1.342e-18 Identity = 54/174 (31.03%), Postives = 90/174 (51.72%), Query Frame = 3 Query: 168 TSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVVLAIGDFI-NIQAHACVGGKSVGED---IRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSR-GFKDQIYDVYR 674 T F +K +L R I GFE PS +QQ + I G DV+ QA+SG GKT++ L+ Q +D EV +++ RELA Q L ++ +++ GG + +D ++ E H+V TPGR+ +++ K + +K V+DE D++L + + D++R Sbjct: 58 TGFKDFLLKPELARAIIDCGFEHPSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTLQQLDPVPGEVSVVVICNARELAYQIRNEYLRFSKYMPDVKTAVFYGGTPITKDAELLKNKETAPHIVVATPGRLKALVRDKLIDLSHVKNFVIDECDKVLEELDMRRDVQDIFR 231
BLAST of FC868508 vs. ExPASy Swiss-Prot
Match: RHLB_PASMU (ATP-dependent RNA helicase rhlB OS=Pasteurella multocida GN=rhlB PE=3 SV=1) HSP 1 Score: 93.2041 bits (230), Expect = 1.342e-18 Identity = 56/164 (34.15%), Postives = 88/164 (53.66%), Query Frame = 3 Query: 174 FDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALT------VCQTVDTSSREVQALILSPTRELATQTEKVVLAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGF 647 F + + +L + + GF+ + IQ ++ + G+DV QAQ+GTGKT M LT + Q D R+ +ALIL+PTRELA Q + ++ GG + ++ +E GV ++ GT GRV D +K+ +R I+++VLDE+D M GF Sbjct: 11 FSDLPLHHQVLAALQEKGFDYCTPIQALSLPMSLAGKDVAGQAQTGTGKT-MAFLTATFHHLLTQQGDKGGRQPRALILAPTRELAVQINNDAALLTKATGLKTGLAYGGDGYEKQLKAIEQGVDILIGTTGRVIDYVKQGIVRLDKIQVVVLDEADRMFDLGF 173
BLAST of FC868508 vs. ExPASy Swiss-Prot
Match: PRP5_VANPO (Pre-mRNA-processing ATP-dependent RNA helicase PRP5 OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294) GN=PRP5 PE=3 SV=1) HSP 1 Score: 93.2041 bits (230), Expect = 1.342e-18 Identity = 58/181 (32.04%), Postives = 100/181 (55.25%), Query Frame = 3 Query: 165 ITSFDAMGIKDDLLRGIY-QYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVC------QTVDTSSREVQALILSPTRELATQ-TEKVVLAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMI---KRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYR 674 IT + +G+ D++ I + +++P+AIQ +A+ I+ GRD+I +++G+GKT L + +T+ + LIL+PTRELA Q E+V +I+ C GG + + I L+ GV +V TPGR+ D++ K + T+ I +V+DE+D + GF+ QI + + Sbjct: 275 ITRWSQLGLPTDIMNLITKELKYDEPTAIQSQAIPAIMSGRDLIGISKTGSGKTISYILPMLRQIKAQRTLSKNETGPLGLILAPTRELALQINEEVEKFTKQDRSIRTICCTGGSEMKKQINDLKRGVEIVVATPGRLIDILTLNSGKLISTKRITFVVMDEADRLFDMGFEPQITQIMK 455 The following BLAST results are available for this feature:
BLAST of FC868508 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >FC868508 ID=FC868508; Name=FC868508; organism=Citrus clementina; type=EST; length=677bpback to top |