FC868508

Overview
NameFC868508
Unique NameFC868508
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length677
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868508 vs. ExPASy Swiss-Prot
Match: PRP28_DEBHA (Pre-mRNA-splicing ATP-dependent RNA helicase PRP28 OS=Debaryomyces hansenii GN=PRP28 PE=3 SV=2)

HSP 1 Score: 93.5893 bits (231), Expect = 1.027e-18
Identity = 48/169 (28.40%), Postives = 85/169 (50.30%), Query Frame = 3
Query:  213 IYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTV--------------DTSSREVQALILSPTRELATQTEKVVLAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRY 677
            I   G++ P+ IQ+ ++   + GRD++  A++G+GKT    L +   +              +++  +   LIL+PTRELA Q  K     GD +N+     +GG    E +  + +GVH+V  TPGR+ D ++R  +         +DE+D+M+  GF+  +  +  Y
Sbjct:  170 IKNLGYDSPTPIQRASIPLALNGRDIVGIAETGSGKTLAFLLPLFSYILSVDSNYLLYEHQQESNFNKPLGLILAPTRELALQITKEAKLFGDKLNLNVVTIIGGHQYEETVHSVRNGVHIVVATPGRLIDSLERGIINLSNCYFFTMDEADKMIDMGFEKSLQSILNY 338          
BLAST of FC868508 vs. ExPASy Swiss-Prot
Match: PRP11_SCHPO (Pre-mRNA-processing ATP-dependent RNA helicase prp11 OS=Schizosaccharomyces pombe GN=prp11 PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.027e-18
Identity = 57/173 (32.95%), Postives = 90/173 (52.02%), Query Frame = 3
Query:  165 ITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVD-----TSSREVQALILSPTRELATQTEKVVLAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAI---KLLVLDESDEMLSRGFKDQI 659
            +TS+   G+    +  I   G+EKP++IQ +A+  I  GRDVI  A++G+GKT    L + + +       +     A+I++PTRELA Q  +        +NI+A    GG  + + I  L+ G  +V  TPGR+ D++     R   +     LVLDE+D M   GF+ Q+
Sbjct:  417 VTSWSQCGLSAQTISVINSLGYEKPTSIQAQAIPAITSGRDVIGVAKTGSGKTIAFLLPMFRHIKDQRPLKTGEGPIAIIMTPTRELAVQIFRECKPFLKLLNIRACCAYGGAPIKDQIADLKRGAEIVVCTPGRMIDVLSANAGRVTNLHRCTYLVLDEADRMFDLGFEPQV 589          
BLAST of FC868508 vs. ExPASy Swiss-Prot
Match: MAK5_MAGGR (ATP-dependent RNA helicase MAK5 OS=Magnaporthe grisea GN=MAK5 PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.027e-18
Identity = 64/190 (33.68%), Postives = 102/190 (53.68%), Query Frame = 3
Query:  141 ETTEGVEAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQ-----TVDTSSREVQ--------ALILSPTRELATQTEKVVLAIGDFINIQAHAC--VGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKT---LRTRAIKLLVLDESDEMLSRG-FKD 653
            ET EG + ++ ++ +G+ ++++  I +  F KP+AIQ   +  I+ G DV+ +A +G+GKT    + + +        T S+ V         AL+LSPTRELA Q    +  +   +    + C   GG SV +  R+LE    +V GTPGR+ +++   T      R IK LV+DE+D +LS G FKD
Sbjct:  204 ETDEGAD-VSEWEPLGLSEEIMSSIAKLKFAKPTAIQAATIPEILAGHDVVGKASTGSGKTLAFGIPIVEKWLSINASTQSKRVAEGETKTPIALVLSPTRELAHQLTDHIKNLCAGLATSPYVCSVTGGLSVHKQQRQLEK-ADIVVGTPGRLWEVLSSSTKLIQAFRGIKFLVVDEADRLLSEGHFKD 391          
BLAST of FC868508 vs. ExPASy Swiss-Prot
Match: DRS1_BOTFB (ATP-dependent RNA helicase drs1 OS=Botryotinia fuckeliana (strain B05.10) GN=drs1 PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.027e-18
Identity = 55/174 (31.61%), Postives = 93/174 (53.45%), Query Frame = 3
Query:  159 EAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREV---QALILSPTRELATQTEKVVLAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRK-TLRTRAIKLLVLDESDEMLSRGFKDQIYDV 668
            E  T+F +M +   +LRG+   GF +P+ IQ + +   + G+DV+  A +G+GKT+   + V + +    ++V   +  IL PTRELA Q   V   +    +I+    VGG S+     +L     V+  TPGR  D ++   +     +++LVLDE+D ML  GF D++ ++
Sbjct:  265 ELNTTFQSMSLSRPILRGLATVGFTQPTPIQSKTIPVALLGKDVVGGAVTGSGKTAAFVVPVLERLLYRPKKVPTSRVAILMPTRELAIQCHAVATKLASHTDIKFCLAVGGLSLKVQEAELRLRPDVIIATPGRFIDHMRNSPSFTVDTLEILVLDEADRMLEAGFADELNEI 438          
BLAST of FC868508 vs. ExPASy Swiss-Prot
Match: DBP8_NEUCR (ATP-dependent RNA helicase dbp-8 OS=Neurospora crassa GN=dbp-8 PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.027e-18
Identity = 53/165 (32.12%), Postives = 93/165 (56.36%), Query Frame = 3
Query:  156 VEAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVVLAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRT----RAIKLLVLDESDEMLS 638
            ++A T+FDA+ ++  L++ +     ++P+ IQ+  +  I+KGRD I  +++G+GKT   A+ + Q    +   +  +IL+PTRELA Q  + V+A+     ++A    GG  + +    L    H+V  TPGR+ D I+     T    R +K +VLDE+D +L+
Sbjct:  191 IDANTTFDALNVRPWLVQSLANMAIKRPTGIQKGCIPEILKGRDCIGGSRTGSGKTVAFAVPILQQWAANPSAIFGVILTPTRELALQIMEQVIALSQPHVLKAVLITGGADMRKQAIDLAKRPHLVIATPGRLADHIRTSGEDTICGLRRVKFIVLDEADRLLA 355          
BLAST of FC868508 vs. ExPASy Swiss-Prot
Match: DBP4_DEBHA (ATP-dependent RNA helicase DBP4 OS=Debaryomyces hansenii GN=DBP4 PE=3 SV=2)

HSP 1 Score: 93.5893 bits (231), Expect = 1.027e-18
Identity = 56/175 (32.00%), Postives = 98/175 (56.00%), Query Frame = 3
Query:  159 EAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTV----DTSSREVQALILSPTRELATQTEKVVLAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKT-LRTRAIKLLVLDESDEMLSRGFKDQIYDV 668
            ++I+ F  + I ++  RG+ +  F   + IQ++ +   +KG DV+  A++G+GKT    +   +++     T    + ALI+SPTRELA Q  +V++ IG   N  A    GGK V  +  ++   ++++ GTPGR+   +     + T  +++LVLDE+D  L  GFK QI ++
Sbjct:   43 KSISQFSDLPISEETARGLKEASFASLTDIQKKTIPISLKGEDVMGTAKTGSGKTLAFLIPTIESLIRNKITEYDGLAALIISPTRELAVQIFEVLVKIGKHNNFSAGLVTGGKDVKYEKERVSK-MNILVGTPGRISQHLNESVGMETSNLQVLVLDEADRCLDMGFKKQIDNI 216          
BLAST of FC868508 vs. ExPASy Swiss-Prot
Match: Y425_MYCGE (Probable ATP-dependent RNA helicase MG425 OS=Mycoplasma genitalium GN=MG425 PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.342e-18
Identity = 47/168 (27.98%), Postives = 94/168 (55.95%), Query Frame = 3
Query:  168 TSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQ-ALILSPTRELATQTEKVVLAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDV 668
            ++F  +GI   L+  +      KP+ IQQ ++   +  +++I  + +GTGKT+  A+ + + +    +  +  L+++PTREL  Q +     I     ++  + +GG    + I+K++    ++ GT GR+ D+++RK +    ++ L++DE D ML RGFK QI+++
Sbjct:    3 STFHELGISQTLIETLNALHINKPTKIQQISIPQFLSEKNLIVHSPTGTGKTAAFAIPIIEKLLKEDQTAKPTLVIAPTRELVEQIKTTFSNIAKNKKLRIISLIGGVPAWKQIKKIKTNPQIIVGTMGRIMDLLERKAIHFSDLEHLIIDEVDLMLDRGFKKQIFNL 170          
BLAST of FC868508 vs. ExPASy Swiss-Prot
Match: SUB22_VANPO (ATP-dependent RNA helicase SUB2-2 OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294) GN=SUB2-2 PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.342e-18
Identity = 54/174 (31.03%), Postives = 90/174 (51.72%), Query Frame = 3
Query:  168 TSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVVLAIGDFI-NIQAHACVGGKSVGED---IRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSR-GFKDQIYDVYR 674
            T F    +K +L R I   GFE PS +QQ  +   I G DV+ QA+SG GKT++  L+  Q +D    EV  +++   RELA Q     L    ++ +++     GG  + +D   ++  E   H+V  TPGR+  +++ K +    +K  V+DE D++L     +  + D++R
Sbjct:   58 TGFKDFLLKPELARAIIDCGFEHPSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTLQQLDPVPGEVSVVVICNARELAYQIRNEYLRFSKYMPDVKTAVFYGGTPITKDAELLKNKETAPHIVVATPGRLKALVRDKLIDLSHVKNFVIDECDKVLEELDMRRDVQDIFR 231          
BLAST of FC868508 vs. ExPASy Swiss-Prot
Match: RHLB_PASMU (ATP-dependent RNA helicase rhlB OS=Pasteurella multocida GN=rhlB PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.342e-18
Identity = 56/164 (34.15%), Postives = 88/164 (53.66%), Query Frame = 3
Query:  174 FDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALT------VCQTVDTSSREVQALILSPTRELATQTEKVVLAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGF 647
            F  + +   +L  + + GF+  + IQ  ++   + G+DV  QAQ+GTGKT M  LT      + Q  D   R+ +ALIL+PTRELA Q       +     ++     GG    + ++ +E GV ++ GT GRV D +K+  +R   I+++VLDE+D M   GF
Sbjct:   11 FSDLPLHHQVLAALQEKGFDYCTPIQALSLPMSLAGKDVAGQAQTGTGKT-MAFLTATFHHLLTQQGDKGGRQPRALILAPTRELAVQINNDAALLTKATGLKTGLAYGGDGYEKQLKAIEQGVDILIGTTGRVIDYVKQGIVRLDKIQVVVLDEADRMFDLGF 173          
BLAST of FC868508 vs. ExPASy Swiss-Prot
Match: PRP5_VANPO (Pre-mRNA-processing ATP-dependent RNA helicase PRP5 OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294) GN=PRP5 PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.342e-18
Identity = 58/181 (32.04%), Postives = 100/181 (55.25%), Query Frame = 3
Query:  165 ITSFDAMGIKDDLLRGIY-QYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVC------QTVDTSSREVQALILSPTRELATQ-TEKVVLAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMI---KRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYR 674
            IT +  +G+  D++  I  +  +++P+AIQ +A+  I+ GRD+I  +++G+GKT    L +       +T+  +      LIL+PTRELA Q  E+V        +I+   C GG  + + I  L+ GV +V  TPGR+ D++     K + T+ I  +V+DE+D +   GF+ QI  + +
Sbjct:  275 ITRWSQLGLPTDIMNLITKELKYDEPTAIQSQAIPAIMSGRDLIGISKTGSGKTISYILPMLRQIKAQRTLSKNETGPLGLILAPTRELALQINEEVEKFTKQDRSIRTICCTGGSEMKKQINDLKRGVEIVVATPGRLIDILTLNSGKLISTKRITFVVMDEADRLFDMGFEPQITQIMK 455          
The following BLAST results are available for this feature:
BLAST of FC868508 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
PRP28_DEBHA1.027e-1828.40Pre-mRNA-splicing ATP-dependent RNA helicase PRP28... [more]
PRP11_SCHPO1.027e-1832.95Pre-mRNA-processing ATP-dependent RNA helicase prp... [more]
MAK5_MAGGR1.027e-1833.68ATP-dependent RNA helicase MAK5 OS=Magnaporthe gri... [more]
DRS1_BOTFB1.027e-1831.61ATP-dependent RNA helicase drs1 OS=Botryotinia fuc... [more]
DBP8_NEUCR1.027e-1832.12ATP-dependent RNA helicase dbp-8 OS=Neurospora cra... [more]
DBP4_DEBHA1.027e-1832.00ATP-dependent RNA helicase DBP4 OS=Debaryomyces ha... [more]
Y425_MYCGE1.342e-1827.98Probable ATP-dependent RNA helicase MG425 OS=Mycop... [more]
SUB22_VANPO1.342e-1831.03ATP-dependent RNA helicase SUB2-2 OS=Vanderwaltozy... [more]
RHLB_PASMU1.342e-1834.15ATP-dependent RNA helicase rhlB OS=Pasteurella mul... [more]
PRP5_VANPO1.342e-1832.04Pre-mRNA-processing ATP-dependent RNA helicase PRP... [more]

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Properties
Property NameValue
Genbank descriptionC31001C05EF AbioticL1 Citrus clementina cDNA clone C31001C05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868508 ID=FC868508; Name=FC868508; organism=Citrus clementina; type=EST; length=677bp
GCTCACCTGGAAGAGGAAACTCTCATTGATTCTTTGATTTCGAAGAGTAA
TTGTTGCGAATTTCGTGCGAGATGGCGGCGGCGACGGCTATGCGGAGGAG
AGGAGGGGGCGGCGGAATGGATGACGACAAGATGGTGTTCGAAACAACGG
AAGGAGTGGAGGCAATCACGAGCTTCGACGCAATGGGAATAAAAGACGAT
CTGTTGCGTGGAATTTATCAGTACGGATTCGAGAAGCCATCGGCCATACA
ACAGAGGGCCGTTATGCCGATTATAAAGGGCCGTGATGTAATTGCACAGG
CCCAGTCTGGTACTGGCAAGACCTCTATGATTGCCCTAACTGTTTGCCAG
ACGGTCGATACTTCTAGCAGAGAGGTGCAGGCGTTGATTTTGTCACCTAC
GAGGGAGCTGGCGACGCAGACAGAGAAAGTGGTTTTGGCAATTGGTGATT
TTATTAACATACAAGCACATGCGTGTGTTGGAGGCAAAAGTGTCGGGGAA
GATATTAGGAAGTTAGAGCATGGAGTTCATGTGGTGTCTGGAACTCCGGG
TAGAGTCTGTGATATGATTAAGAGGAAAACTTTGCGTACTAGAGCTATTA
AATTATTGGTGCTTGATGAGTCTGATGAGATGCTGAGCAGAGGGTTCAAG
GATCAAATTTATGATGTGTACCGTTAT
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