FC868508

Overview
NameFC868508
Unique NameFC868508
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length677
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13756 contig Ccv1_Contig13756:35..711. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC868508 vs. ExPASy Swiss-Prot
Match: DRS1_YEAST (ATP-dependent RNA helicase DRS1 OS=Saccharomyces cerevisiae GN=DRS1 PE=1 SV=2)

HSP 1 Score: 93.2041 bits (230), Expect = 1.342e-18
Identity = 56/183 (30.60%), Postives = 100/183 (54.64%), Query Frame = 3
Query:  147 TEGVEA----ITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTV---DTSSREVQALILSPTRELATQTEKVVLAIGDFIN-IQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRK-TLRTRAIKLLVLDESDEMLSRGFKDQIYDV 668
            TEG EA      +F+++ +   +L+G+   G+ KPS IQ   +   + G+D+IA A +G+GKT+   + + + +          + ++L PTRELA Q   V   I  F++ I     VGG ++ +  + L+    +V  TPGR  D I+   +    ++++LV+DE+D ML  GF+D++ ++
Sbjct:  220 TEGDEAKKQMYENFNSLSLSRPVLKGLASLGYVKPSPIQSATIPIALLGKDIIAGAVTGSGKTAAFMIPIIERLLYKPAKIASTRVIVLLPTRELAIQVADVGKQIARFVSGITFGLAVGGLNLRQQEQMLKSRPDIVIATPGRFIDHIRNSASFNVDSVEILVMDEADRMLEEGFQDELNEI 402          
BLAST of FC868508 vs. ExPASy Swiss-Prot
Match: DRS1_YEAS7 (ATP-dependent RNA helicase DRS1 OS=Saccharomyces cerevisiae (strain YJM789) GN=DRS1 PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.342e-18
Identity = 56/183 (30.60%), Postives = 100/183 (54.64%), Query Frame = 3
Query:  147 TEGVEA----ITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTV---DTSSREVQALILSPTRELATQTEKVVLAIGDFIN-IQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRK-TLRTRAIKLLVLDESDEMLSRGFKDQIYDV 668
            TEG EA      +F+++ +   +L+G+   G+ KPS IQ   +   + G+D+IA A +G+GKT+   + + + +          + ++L PTRELA Q   V   I  F++ I     VGG ++ +  + L+    +V  TPGR  D I+   +    ++++LV+DE+D ML  GF+D++ ++
Sbjct:  222 TEGDEAKKQMYENFNSLSLSRPVLKGLASLGYVKPSPIQSATIPIALLGKDIIAGAVTGSGKTAAFMIPIIERLLYKPAKIASTRVIVLLPTRELAIQVADVGKQIARFVSGITFGLAVGGLNLRQQEQMLKSRPDIVIATPGRFIDHIRNSASFNVDSVEILVMDEADRMLEEGFQDELNEI 404          
BLAST of FC868508 vs. ExPASy Swiss-Prot
Match: DED1_YEAST (ATP-dependent RNA helicase DED1 OS=Saccharomyces cerevisiae GN=DED1 PE=1 SV=2)

HSP 1 Score: 93.2041 bits (230), Expect = 1.342e-18
Identity = 62/182 (34.07%), Postives = 94/182 (51.65%), Query Frame = 3
Query:  159 EAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVC----QTVDTSSREVQ-----------ALILSPTRELATQTEKVVLAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQI 659
            E IT F +  +   LL  I    F KP+ +Q+ +V  +  GRD++A AQ+G+GKT      V     +T  +   E Q           A+I++PTRELATQ             ++A    GG  +G  +R++E G  ++  TPGR+ D+++R  +    +K LVLDE+D ML  GF+ QI
Sbjct:  139 EPITEFTSPPLDGLLLENIKLARFTKPTPVQKYSVPIVANGRDLMACAQTGSGKTGGFLFPVLSESFKTGPSPQPESQGSFYQRKAYPTAVIMAPTRELATQIFDEAKKFTYRSWVKACVVYGGSPIGNQLREIERGCDLLVATPGRLNDLLERGKISLANVKYLVLDEADRMLDMGFEPQI 320          
BLAST of FC868508 vs. ExPASy Swiss-Prot
Match: DED1_YEAS7 (ATP-dependent RNA helicase DED1 OS=Saccharomyces cerevisiae (strain YJM789) GN=DED1 PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.342e-18
Identity = 62/182 (34.07%), Postives = 94/182 (51.65%), Query Frame = 3
Query:  159 EAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVC----QTVDTSSREVQ-----------ALILSPTRELATQTEKVVLAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQI 659
            E IT F +  +   LL  I    F KP+ +Q+ +V  +  GRD++A AQ+G+GKT      V     +T  +   E Q           A+I++PTRELATQ             ++A    GG  +G  +R++E G  ++  TPGR+ D+++R  +    +K LVLDE+D ML  GF+ QI
Sbjct:  139 EPITEFTSPPLDGLLLENIKLARFTKPTPVQKYSVPIVANGRDLMACAQTGSGKTGGFLFPVLSESFKTGPSPQPESQGSFYQRKAYPTAVIMAPTRELATQIFDEAKKFTYRSWVKACVVYGGSPIGNQLREIERGCDLLVATPGRLNDLLERGKISLANVKYLVLDEADRMLDMGFEPQI 320          
BLAST of FC868508 vs. ExPASy Swiss-Prot
Match: DED1_DEBHA (ATP-dependent RNA helicase DED1 OS=Debaryomyces hansenii GN=DED1 PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.342e-18
Identity = 65/186 (34.95%), Postives = 98/186 (52.69%), Query Frame = 3
Query:  150 EGV-EAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTV---------CQTVDT----SSREVQ--ALILSPTRELATQTEKVVLAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQI 659
            EGV E IT+F A  +   L+  +    F KP+ +Q+ +V  +  GRD++A AQ+G+GKT      V          +  +T    SS +V   AL+++PTREL +Q             ++     GG  +G  IR LE G  ++  TPGR+ D+++R  +   +IK LVLDE+D ML  GF+ QI
Sbjct:  149 EGVPEPITAFTAPPLDPLLVENVKLSRFTKPTPVQKYSVPIVAAGRDLMACAQTGSGKTGGFLFPVLSESYMNGPAEVPETAGAFSSHKVYPTALVMAPTRELVSQIFDEAKKFAYRSWVRPSVVYGGADIGGQIRNLERGCDLLVATPGRLKDLLERGRVSLASIKYLVLDEADRMLDMGFEPQI 334          
BLAST of FC868508 vs. ExPASy Swiss-Prot
Match: DED1_CANGA (ATP-dependent RNA helicase DED1 OS=Candida glabrata GN=DED1 PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.342e-18
Identity = 61/182 (33.52%), Postives = 95/182 (52.20%), Query Frame = 3
Query:  159 EAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVC-QTVDTSSREVQA--------------LILSPTRELATQTEKVVLAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQI 659
            EAIT F +  +   LL  I    F KP+ +Q+ +V  + KGRD++A AQ+G+GKT      V  ++  T   E  A              ++++PTRELATQ             ++     GG  +G  +R+++HG  ++  TPGR+ D+++R  +    +K LVLDE+D ML  GF+ QI
Sbjct:  142 EAITEFTSPPLDSLLLENIKLARFTKPTPVQKYSVPIVSKGRDLMACAQTGSGKTGGFLFPVLSESFLTGPAEKAANDGYSYQRKAFPTAVVMAPTRELATQIFDEAKKFCYRSWVKPCVVYGGAPIGNQMREMDHGCDLLVATPGRLNDLLERGKVSLSNVKYLVLDEADRMLDMGFEPQI 323          
BLAST of FC868508 vs. ExPASy Swiss-Prot
Match: DDX50_MOUSE (ATP-dependent RNA helicase DDX50 OS=Mus musculus GN=Ddx50 PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.342e-18
Identity = 56/173 (32.37%), Postives = 96/173 (55.49%), Query Frame = 3
Query:  171 SFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTS------SREVQALILSPTRELATQTEKVVLAIGDFINIQAHACV-GGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDV 668
            +F    I ++ ++ +   G      IQ +   P+ +G+D+IAQA++GTGKT   A+ + + +  +      SR  + L+L+PTRELA Q  K    I   +++   AC  GG S    I ++ +G+ ++ GTPGR+ D ++   L    ++ +VLDE D+ML  GF +Q+ D+
Sbjct:  135 AFSNFSISEETIKLLKGRGVTYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIERLQRNQETIKKSRSPKVLVLAPTRELANQVAKDFKDITRKLSV---ACFYGGTSYQSQINQIRNGIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDI 304          
BLAST of FC868508 vs. ExPASy Swiss-Prot
Match: DBP10_CANGA (ATP-dependent RNA helicase DBP10 OS=Candida glabrata GN=DBP10 PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.342e-18
Identity = 49/168 (29.17%), Postives = 94/168 (55.95%), Query Frame = 3
Query:  171 SFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREV--QALILSPTRELATQTEKVVLAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDV 668
            SF + G+   +L  I + GF +P+ IQ++ +  I++ RD++  A++G+GKT+   L + + + T S ++  +A+ILSP+RELA QT  V        ++++    GG S+ +    +     V+  TPGR   +     L  ++++  V DE+D +   GF++Q+ ++
Sbjct:  116 SFASFGLSKLILVNISKRGFRQPTPIQRKTIPLILQNRDIVGMARTGSGKTAAFVLPMIEKLKTHSSKIGARAIILSPSRELAMQTHSVFKEFSRGTHLRSVLLTGGDSLEDQFGMMMTNPDVIIATPGRFLHLKVEMNLDLKSVEYAVFDEADRLFEMGFQEQLNEL 283          
BLAST of FC868508 vs. ExPASy Swiss-Prot
Match: SUB2_YARLI (ATP-dependent RNA helicase SUB2 OS=Yarrowia lipolytica GN=SUB2 PE=3 SV=2)

HSP 1 Score: 92.8189 bits (229), Expect = 1.752e-18
Identity = 55/174 (31.61%), Postives = 92/174 (52.87%), Query Frame = 3
Query:  168 TSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVVLAIGDFI-NIQAHACVGGKSVGEDIRKL---EHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSR-GFKDQIYDVYR 674
            T F    +K +LLR I   GFE PS +QQ  +   I G DV+ QA++G GKT++  L+  Q ++    E   ++L  TRELA Q          ++ +++     GG  + +DI  +   E   HV+  TPGR+  +++ K LR   +K  V+DE D++L +   +  + +++R
Sbjct:   57 TGFRDFLLKPELLRAIVDCGFEHPSEVQQVCIPQSILGTDVLCQAKAGVGKTAVFVLSTLQQLEPVPGECSVVVLCHTRELAYQIMNEYARFSKYLPDVKTAVFYGGSPIQKDIELIQNKETSPHVIVATPGRLHALVRDKHLRLGNVKTFVIDECDKVLDQIDMRRDVQEIFR 230          
BLAST of FC868508 vs. ExPASy Swiss-Prot
Match: RHLB_PSESM (ATP-dependent RNA helicase rhlB OS=Pseudomonas syringae pv. tomato GN=rhlB PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.752e-18
Identity = 58/183 (31.69%), Postives = 94/183 (51.37%), Query Frame = 3
Query:  150 EGVEAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTV----CQTVDTSSR---EVQALILSPTRELATQTEKVVLAIGDFINIQAHACVGGKSVGEDIRKLE-HGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYR 674
            E  E  T F    +  +L+  I   GF   + IQ   +   +KG+D I +AQ+GTGKT+   +++     QT   + R   E +ALI++PTREL  Q  K    +  + N+     VGG    + +++LE     ++  TPGR+ D  +R  +    ++++VLDE+D ML  GF  Q+  + R
Sbjct:    2 EPQEGKTRFHDFNLAPELMHAIQDLGFPYCTPIQAGVLGFTLKGKDAIGRAQTGTGKTAAFLISIIEQLTQTPPPAERYMGEPRALIIAPTRELVVQIAKDAADLTKYTNLNVMTFVGGMDFDKQLKQLEARHCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQIIR 184          
The following BLAST results are available for this feature:
BLAST of FC868508 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DRS1_YEAST1.342e-1830.60ATP-dependent RNA helicase DRS1 OS=Saccharomyces c... [more]
DRS1_YEAS71.342e-1830.60ATP-dependent RNA helicase DRS1 OS=Saccharomyces c... [more]
DED1_YEAST1.342e-1834.07ATP-dependent RNA helicase DED1 OS=Saccharomyces c... [more]
DED1_YEAS71.342e-1834.07ATP-dependent RNA helicase DED1 OS=Saccharomyces c... [more]
DED1_DEBHA1.342e-1834.95ATP-dependent RNA helicase DED1 OS=Debaryomyces ha... [more]
DED1_CANGA1.342e-1833.52ATP-dependent RNA helicase DED1 OS=Candida glabrat... [more]
DDX50_MOUSE1.342e-1832.37ATP-dependent RNA helicase DDX50 OS=Mus musculus G... [more]
DBP10_CANGA1.342e-1829.17ATP-dependent RNA helicase DBP10 OS=Candida glabra... [more]
SUB2_YARLI1.752e-1831.61ATP-dependent RNA helicase SUB2 OS=Yarrowia lipoly... [more]
RHLB_PSESM1.752e-1831.69ATP-dependent RNA helicase rhlB OS=Pseudomonas syr... [more]

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Properties
Property NameValue
Genbank descriptionC31001C05EF AbioticL1 Citrus clementina cDNA clone C31001C05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868508 ID=FC868508; Name=FC868508; organism=Citrus clementina; type=EST; length=677bp
GCTCACCTGGAAGAGGAAACTCTCATTGATTCTTTGATTTCGAAGAGTAA
TTGTTGCGAATTTCGTGCGAGATGGCGGCGGCGACGGCTATGCGGAGGAG
AGGAGGGGGCGGCGGAATGGATGACGACAAGATGGTGTTCGAAACAACGG
AAGGAGTGGAGGCAATCACGAGCTTCGACGCAATGGGAATAAAAGACGAT
CTGTTGCGTGGAATTTATCAGTACGGATTCGAGAAGCCATCGGCCATACA
ACAGAGGGCCGTTATGCCGATTATAAAGGGCCGTGATGTAATTGCACAGG
CCCAGTCTGGTACTGGCAAGACCTCTATGATTGCCCTAACTGTTTGCCAG
ACGGTCGATACTTCTAGCAGAGAGGTGCAGGCGTTGATTTTGTCACCTAC
GAGGGAGCTGGCGACGCAGACAGAGAAAGTGGTTTTGGCAATTGGTGATT
TTATTAACATACAAGCACATGCGTGTGTTGGAGGCAAAAGTGTCGGGGAA
GATATTAGGAAGTTAGAGCATGGAGTTCATGTGGTGTCTGGAACTCCGGG
TAGAGTCTGTGATATGATTAAGAGGAAAACTTTGCGTACTAGAGCTATTA
AATTATTGGTGCTTGATGAGTCTGATGAGATGCTGAGCAGAGGGTTCAAG
GATCAAATTTATGATGTGTACCGTTAT
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