FC868508
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC868508 vs. ExPASy Swiss-Prot
Match: DRS1_YEAST (ATP-dependent RNA helicase DRS1 OS=Saccharomyces cerevisiae GN=DRS1 PE=1 SV=2) HSP 1 Score: 93.2041 bits (230), Expect = 1.342e-18 Identity = 56/183 (30.60%), Postives = 100/183 (54.64%), Query Frame = 3 Query: 147 TEGVEA----ITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTV---DTSSREVQALILSPTRELATQTEKVVLAIGDFIN-IQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRK-TLRTRAIKLLVLDESDEMLSRGFKDQIYDV 668 TEG EA +F+++ + +L+G+ G+ KPS IQ + + G+D+IA A +G+GKT+ + + + + + ++L PTRELA Q V I F++ I VGG ++ + + L+ +V TPGR D I+ + ++++LV+DE+D ML GF+D++ ++ Sbjct: 220 TEGDEAKKQMYENFNSLSLSRPVLKGLASLGYVKPSPIQSATIPIALLGKDIIAGAVTGSGKTAAFMIPIIERLLYKPAKIASTRVIVLLPTRELAIQVADVGKQIARFVSGITFGLAVGGLNLRQQEQMLKSRPDIVIATPGRFIDHIRNSASFNVDSVEILVMDEADRMLEEGFQDELNEI 402
BLAST of FC868508 vs. ExPASy Swiss-Prot
Match: DRS1_YEAS7 (ATP-dependent RNA helicase DRS1 OS=Saccharomyces cerevisiae (strain YJM789) GN=DRS1 PE=3 SV=1) HSP 1 Score: 93.2041 bits (230), Expect = 1.342e-18 Identity = 56/183 (30.60%), Postives = 100/183 (54.64%), Query Frame = 3 Query: 147 TEGVEA----ITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTV---DTSSREVQALILSPTRELATQTEKVVLAIGDFIN-IQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRK-TLRTRAIKLLVLDESDEMLSRGFKDQIYDV 668 TEG EA +F+++ + +L+G+ G+ KPS IQ + + G+D+IA A +G+GKT+ + + + + + ++L PTRELA Q V I F++ I VGG ++ + + L+ +V TPGR D I+ + ++++LV+DE+D ML GF+D++ ++ Sbjct: 222 TEGDEAKKQMYENFNSLSLSRPVLKGLASLGYVKPSPIQSATIPIALLGKDIIAGAVTGSGKTAAFMIPIIERLLYKPAKIASTRVIVLLPTRELAIQVADVGKQIARFVSGITFGLAVGGLNLRQQEQMLKSRPDIVIATPGRFIDHIRNSASFNVDSVEILVMDEADRMLEEGFQDELNEI 404
BLAST of FC868508 vs. ExPASy Swiss-Prot
Match: DED1_YEAST (ATP-dependent RNA helicase DED1 OS=Saccharomyces cerevisiae GN=DED1 PE=1 SV=2) HSP 1 Score: 93.2041 bits (230), Expect = 1.342e-18 Identity = 62/182 (34.07%), Postives = 94/182 (51.65%), Query Frame = 3 Query: 159 EAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVC----QTVDTSSREVQ-----------ALILSPTRELATQTEKVVLAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQI 659 E IT F + + LL I F KP+ +Q+ +V + GRD++A AQ+G+GKT V +T + E Q A+I++PTRELATQ ++A GG +G +R++E G ++ TPGR+ D+++R + +K LVLDE+D ML GF+ QI Sbjct: 139 EPITEFTSPPLDGLLLENIKLARFTKPTPVQKYSVPIVANGRDLMACAQTGSGKTGGFLFPVLSESFKTGPSPQPESQGSFYQRKAYPTAVIMAPTRELATQIFDEAKKFTYRSWVKACVVYGGSPIGNQLREIERGCDLLVATPGRLNDLLERGKISLANVKYLVLDEADRMLDMGFEPQI 320
BLAST of FC868508 vs. ExPASy Swiss-Prot
Match: DED1_YEAS7 (ATP-dependent RNA helicase DED1 OS=Saccharomyces cerevisiae (strain YJM789) GN=DED1 PE=3 SV=1) HSP 1 Score: 93.2041 bits (230), Expect = 1.342e-18 Identity = 62/182 (34.07%), Postives = 94/182 (51.65%), Query Frame = 3 Query: 159 EAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVC----QTVDTSSREVQ-----------ALILSPTRELATQTEKVVLAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQI 659 E IT F + + LL I F KP+ +Q+ +V + GRD++A AQ+G+GKT V +T + E Q A+I++PTRELATQ ++A GG +G +R++E G ++ TPGR+ D+++R + +K LVLDE+D ML GF+ QI Sbjct: 139 EPITEFTSPPLDGLLLENIKLARFTKPTPVQKYSVPIVANGRDLMACAQTGSGKTGGFLFPVLSESFKTGPSPQPESQGSFYQRKAYPTAVIMAPTRELATQIFDEAKKFTYRSWVKACVVYGGSPIGNQLREIERGCDLLVATPGRLNDLLERGKISLANVKYLVLDEADRMLDMGFEPQI 320
BLAST of FC868508 vs. ExPASy Swiss-Prot
Match: DED1_DEBHA (ATP-dependent RNA helicase DED1 OS=Debaryomyces hansenii GN=DED1 PE=3 SV=1) HSP 1 Score: 93.2041 bits (230), Expect = 1.342e-18 Identity = 65/186 (34.95%), Postives = 98/186 (52.69%), Query Frame = 3 Query: 150 EGV-EAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTV---------CQTVDT----SSREVQ--ALILSPTRELATQTEKVVLAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQI 659 EGV E IT+F A + L+ + F KP+ +Q+ +V + GRD++A AQ+G+GKT V + +T SS +V AL+++PTREL +Q ++ GG +G IR LE G ++ TPGR+ D+++R + +IK LVLDE+D ML GF+ QI Sbjct: 149 EGVPEPITAFTAPPLDPLLVENVKLSRFTKPTPVQKYSVPIVAAGRDLMACAQTGSGKTGGFLFPVLSESYMNGPAEVPETAGAFSSHKVYPTALVMAPTRELVSQIFDEAKKFAYRSWVRPSVVYGGADIGGQIRNLERGCDLLVATPGRLKDLLERGRVSLASIKYLVLDEADRMLDMGFEPQI 334
BLAST of FC868508 vs. ExPASy Swiss-Prot
Match: DED1_CANGA (ATP-dependent RNA helicase DED1 OS=Candida glabrata GN=DED1 PE=3 SV=1) HSP 1 Score: 93.2041 bits (230), Expect = 1.342e-18 Identity = 61/182 (33.52%), Postives = 95/182 (52.20%), Query Frame = 3 Query: 159 EAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVC-QTVDTSSREVQA--------------LILSPTRELATQTEKVVLAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQI 659 EAIT F + + LL I F KP+ +Q+ +V + KGRD++A AQ+G+GKT V ++ T E A ++++PTRELATQ ++ GG +G +R+++HG ++ TPGR+ D+++R + +K LVLDE+D ML GF+ QI Sbjct: 142 EAITEFTSPPLDSLLLENIKLARFTKPTPVQKYSVPIVSKGRDLMACAQTGSGKTGGFLFPVLSESFLTGPAEKAANDGYSYQRKAFPTAVVMAPTRELATQIFDEAKKFCYRSWVKPCVVYGGAPIGNQMREMDHGCDLLVATPGRLNDLLERGKVSLSNVKYLVLDEADRMLDMGFEPQI 323
BLAST of FC868508 vs. ExPASy Swiss-Prot
Match: DDX50_MOUSE (ATP-dependent RNA helicase DDX50 OS=Mus musculus GN=Ddx50 PE=2 SV=1) HSP 1 Score: 93.2041 bits (230), Expect = 1.342e-18 Identity = 56/173 (32.37%), Postives = 96/173 (55.49%), Query Frame = 3 Query: 171 SFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTS------SREVQALILSPTRELATQTEKVVLAIGDFINIQAHACV-GGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDV 668 +F I ++ ++ + G IQ + P+ +G+D+IAQA++GTGKT A+ + + + + SR + L+L+PTRELA Q K I +++ AC GG S I ++ +G+ ++ GTPGR+ D ++ L ++ +VLDE D+ML GF +Q+ D+ Sbjct: 135 AFSNFSISEETIKLLKGRGVTYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIERLQRNQETIKKSRSPKVLVLAPTRELANQVAKDFKDITRKLSV---ACFYGGTSYQSQINQIRNGIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDI 304
BLAST of FC868508 vs. ExPASy Swiss-Prot
Match: DBP10_CANGA (ATP-dependent RNA helicase DBP10 OS=Candida glabrata GN=DBP10 PE=3 SV=1) HSP 1 Score: 93.2041 bits (230), Expect = 1.342e-18 Identity = 49/168 (29.17%), Postives = 94/168 (55.95%), Query Frame = 3 Query: 171 SFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREV--QALILSPTRELATQTEKVVLAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDV 668 SF + G+ +L I + GF +P+ IQ++ + I++ RD++ A++G+GKT+ L + + + T S ++ +A+ILSP+RELA QT V ++++ GG S+ + + V+ TPGR + L ++++ V DE+D + GF++Q+ ++ Sbjct: 116 SFASFGLSKLILVNISKRGFRQPTPIQRKTIPLILQNRDIVGMARTGSGKTAAFVLPMIEKLKTHSSKIGARAIILSPSRELAMQTHSVFKEFSRGTHLRSVLLTGGDSLEDQFGMMMTNPDVIIATPGRFLHLKVEMNLDLKSVEYAVFDEADRLFEMGFQEQLNEL 283
BLAST of FC868508 vs. ExPASy Swiss-Prot
Match: SUB2_YARLI (ATP-dependent RNA helicase SUB2 OS=Yarrowia lipolytica GN=SUB2 PE=3 SV=2) HSP 1 Score: 92.8189 bits (229), Expect = 1.752e-18 Identity = 55/174 (31.61%), Postives = 92/174 (52.87%), Query Frame = 3 Query: 168 TSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVVLAIGDFI-NIQAHACVGGKSVGEDIRKL---EHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSR-GFKDQIYDVYR 674 T F +K +LLR I GFE PS +QQ + I G DV+ QA++G GKT++ L+ Q ++ E ++L TRELA Q ++ +++ GG + +DI + E HV+ TPGR+ +++ K LR +K V+DE D++L + + + +++R Sbjct: 57 TGFRDFLLKPELLRAIVDCGFEHPSEVQQVCIPQSILGTDVLCQAKAGVGKTAVFVLSTLQQLEPVPGECSVVVLCHTRELAYQIMNEYARFSKYLPDVKTAVFYGGSPIQKDIELIQNKETSPHVIVATPGRLHALVRDKHLRLGNVKTFVIDECDKVLDQIDMRRDVQEIFR 230
BLAST of FC868508 vs. ExPASy Swiss-Prot
Match: RHLB_PSESM (ATP-dependent RNA helicase rhlB OS=Pseudomonas syringae pv. tomato GN=rhlB PE=3 SV=1) HSP 1 Score: 92.8189 bits (229), Expect = 1.752e-18 Identity = 58/183 (31.69%), Postives = 94/183 (51.37%), Query Frame = 3 Query: 150 EGVEAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTV----CQTVDTSSR---EVQALILSPTRELATQTEKVVLAIGDFINIQAHACVGGKSVGEDIRKLE-HGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYR 674 E E T F + +L+ I GF + IQ + +KG+D I +AQ+GTGKT+ +++ QT + R E +ALI++PTREL Q K + + N+ VGG + +++LE ++ TPGR+ D +R + ++++VLDE+D ML GF Q+ + R Sbjct: 2 EPQEGKTRFHDFNLAPELMHAIQDLGFPYCTPIQAGVLGFTLKGKDAIGRAQTGTGKTAAFLISIIEQLTQTPPPAERYMGEPRALIIAPTRELVVQIAKDAADLTKYTNLNVMTFVGGMDFDKQLKQLEARHCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQIIR 184 The following BLAST results are available for this feature:
BLAST of FC868508 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >FC868508 ID=FC868508; Name=FC868508; organism=Citrus clementina; type=EST; length=677bpback to top |