FC868508

Overview
NameFC868508
Unique NameFC868508
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length677
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13756 contig Ccv1_Contig13756:35..711. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC868508 vs. ExPASy Swiss-Prot
Match: IF4A_COCIM (ATP-dependent RNA helicase eIF4A OS=Coccidioides immitis GN=TIF1 PE=3 SV=1)

HSP 1 Score: 225.328 bits (573), Expect = 2.262e-58
Identity = 107/173 (61.85%), Postives = 141/173 (81.50%), Query Frame = 3
Query:  159 EAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVVLAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRY 677
            E   SFDAM ++ +LLRG+Y YGFE+PSAIQQRA+MP+IKG DVIAQAQSGTGKT+  +++  Q VDT+ +  QALIL+PTRELA Q +KVV+AIGDF++++ HAC+GG +V EDI+ L  G  VV GTPGRV DMI+R+ L+T  +K+ VLDE+DEMLSRGF +QIYD++++
Sbjct:   22 EITDSFDAMNLRAELLRGVYAYGFERPSAIQQRAIMPVIKGSDVIAQAQSGTGKTATFSISALQKVDTNLKACQALILAPTRELAQQIQKVVVAIGDFMSVECHACIGGTNVREDIKALNDGPQVVVGTPGRVHDMIQRRVLKTDQMKMFVLDEADEMLSRGFTEQIYDIFQF 194          
BLAST of FC868508 vs. ExPASy Swiss-Prot
Match: FAL1_LODEL (ATP-dependent RNA helicase FAL1 OS=Lodderomyces elongisporus GN=FAL1 PE=3 SV=1)

HSP 1 Score: 224.942 bits (572), Expect = 2.954e-58
Identity = 102/179 (56.98%), Postives = 147/179 (82.12%), Query Frame = 3
Query:  141 ETTEGVEAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVVLAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRY 677
            ++T+GV+   +F++M +K +LL+GIY YGFE PSAIQ RA+M II GRD IAQAQSGTGKT+  ++ + + +D+ S+E QAL+LSPTRELATQ + V+  +GD++NIQ +AC+GGK+VG DI++L+ G  +VSGTPGRV D+IKR+ L TR IK+L+LDE+DE+ ++GFK+QIY++Y++
Sbjct:   17 KSTKGVKVHRTFESMRLKPELLKGIYAYGFEAPSAIQSRAIMQIISGRDTIAQAQSGTGKTATFSIGMLEVLDSKSKECQALVLSPTRELATQIQNVIKHLGDYMNIQTYACIGGKNVGTDIKRLQQGQQIVSGTPGRVLDVIKRRNLSTRHIKMLILDEADELFTKGFKEQIYEIYKH 195          
BLAST of FC868508 vs. ExPASy Swiss-Prot
Match: IF4A_ASPFU (ATP-dependent RNA helicase eIF4A OS=Aspergillus fumigatus GN=tif1 PE=3 SV=1)

HSP 1 Score: 224.172 bits (570), Expect = 5.039e-58
Identity = 107/172 (62.21%), Postives = 140/172 (81.40%), Query Frame = 3
Query:  159 EAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVVLAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYR 674
            E   SFDAM +K +LLRG+Y YGFE+PSAIQQRA++PIIKG DVIAQAQSGTGKT+  +++  Q +D + +  QALIL+PTRELA Q +KVV+AIGDF+NI+ HAC+GG +V ED++ L+ G  VV GTPGRV DMI+R+ LRT  +K+ +LDE+DEMLSRGF +QIYD+++
Sbjct:   22 EITDSFDAMDLKPELLRGVYAYGFERPSAIQQRAILPIIKGNDVIAQAQSGTGKTATFSISALQKLDPNVKGCQALILAPTRELAQQIQKVVVAIGDFMNIECHACIGGTNVREDMKALQEGPQVVVGTPGRVQDMIQRRVLRTDNLKMFILDEADEMLSRGFTEQIYDIFQ 193          
BLAST of FC868508 vs. ExPASy Swiss-Prot
Match: IF4A_AJECN (ATP-dependent RNA helicase eIF4A OS=Ajellomyces capsulata (strain NAm1 / WU24) GN=TIF1 PE=3 SV=1)

HSP 1 Score: 223.402 bits (568), Expect = 8.596e-58
Identity = 107/173 (61.85%), Postives = 141/173 (81.50%), Query Frame = 3
Query:  159 EAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVVLAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRY 677
            E   SFDAM ++ +LLRG+Y YGFE+PSAIQQRA+MP+IKG DVIAQAQSGTGKT+  +++  Q VDT+ +  QALIL+PTRELA Q +KVV+AIGDF++I+ HAC+GG SV ED++ L+ G  VV GTPGRV DMI+R+ L+T  +K+ VLDE+DEMLS GF +QIYD++++
Sbjct:   22 EITDSFDAMNLRAELLRGVYAYGFERPSAIQQRAIMPVIKGSDVIAQAQSGTGKTATFSISALQKVDTNLKACQALILAPTRELAQQIQKVVVAIGDFMSIECHACIGGISVREDMKALQDGPQVVVGTPGRVHDMIQRRVLKTDHMKMFVLDEADEMLSHGFTEQIYDIFQF 194          
BLAST of FC868508 vs. ExPASy Swiss-Prot
Match: IF4A_NEOFI (ATP-dependent RNA helicase eIF4A OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=tif1 PE=3 SV=1)

HSP 1 Score: 223.016 bits (567), Expect = 1.123e-57
Identity = 107/172 (62.21%), Postives = 140/172 (81.40%), Query Frame = 3
Query:  159 EAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVVLAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYR 674
            E   SFD+M +K +LLRGIY YGFE+PSAIQQRA++PIIKG DVIAQAQSGTGKT+  +++  Q +D + +  QALIL+PTRELA Q +KVV+AIGDF+NI+ HAC+GG +V ED++ L+ G  VV GTPGRV DMI+R+ LRT  +K+ +LDE+DEMLSRGF +QIYD+++
Sbjct:   22 EITDSFDSMELKPELLRGIYAYGFERPSAIQQRAILPIIKGNDVIAQAQSGTGKTATFSISALQKLDPNVKGCQALILAPTRELAQQIQKVVVAIGDFMNIECHACIGGTNVREDMKALQEGPQVVVGTPGRVQDMIQRRVLRTDNLKMFILDEADEMLSRGFTEQIYDIFQ 193          
BLAST of FC868508 vs. ExPASy Swiss-Prot
Match: IF4A_ASPCL (ATP-dependent RNA helicase eIF4A OS=Aspergillus clavatus GN=tif1 PE=3 SV=1)

HSP 1 Score: 223.016 bits (567), Expect = 1.123e-57
Identity = 107/172 (62.21%), Postives = 140/172 (81.40%), Query Frame = 3
Query:  159 EAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVVLAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYR 674
            E   SFD+M +K +LLRGIY YGFE+PSAIQQRA+MPIIKG DVIAQAQSGTGKT+  +++  Q +D + +  QALIL+PTRELA Q +KVV+AIGDF++++ HAC+GG +V ED++ L+ G  VV GTPGRV DMI+R+ LRT  +KL +LDE+DEMLSRGF +QIYD+++
Sbjct:   22 EITDSFDSMDLKPELLRGIYAYGFERPSAIQQRAIMPIIKGSDVIAQAQSGTGKTATFSISALQKIDPNLKACQALILAPTRELAQQIQKVVVAIGDFMSLECHACIGGTNVREDMKALQDGPQVVVGTPGRVQDMIQRRVLRTDQMKLFILDEADEMLSRGFTEQIYDIFQ 193          
BLAST of FC868508 vs. ExPASy Swiss-Prot
Match: IF4A_PHANO (ATP-dependent RNA helicase eIF4A OS=Phaeosphaeria nodorum GN=TIF1 PE=3 SV=1)

HSP 1 Score: 222.246 bits (565), Expect = 1.915e-57
Identity = 105/172 (61.05%), Postives = 140/172 (81.40%), Query Frame = 3
Query:  159 EAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVVLAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYR 674
            E   SFDAM +K +LLRG+Y YGFE+PSAIQQRA+MP+IKG DVIAQAQSGTGKT+  +++  Q +D++ +  QALIL+PTRELA Q +KVV+AIGDF+++  HAC+GG SV +D++ L+ G  VV GTPGRV DMI+R+ L+T  +K+ VLDE+DEMLSRGF +QIYD+++
Sbjct:   20 ETTDSFDAMNLKAELLRGVYAYGFERPSAIQQRAIMPVIKGHDVIAQAQSGTGKTATFSISTLQKIDSNVKACQALILAPTRELAQQIQKVVVAIGDFMDVACHACIGGTSVRDDMKALQDGPQVVVGTPGRVHDMIQRRVLKTDHMKMFVLDEADEMLSRGFTEQIYDIFQ 191          
BLAST of FC868508 vs. ExPASy Swiss-Prot
Match: IF4A7_TOBAC (Eukaryotic initiation factor 4A-7 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 221.861 bits (564), Expect = 2.501e-57
Identity = 110/172 (63.95%), Postives = 136/172 (79.07%), Query Frame = 3
Query:  159 EAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVVLAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYR 674
            E   SFDAMG++++LLRGIY YGFEKPSAIQQR ++P  KG DVI QAQSGTGKT+     V Q +D S  E QAL+L+PTRELA Q EKV+ A+GD++ ++ HACVGG SV ED R L+ GVHVV GTPGRV DM++R++LR   IK+ VLDE+DEMLSRGFKDQIYD+++
Sbjct:   37 EVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGVLQQLDYSLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQSGVHVVVGTPGRVFDMLRRQSLRPDHIKMFVLDEADEMLSRGFKDQIYDIFQ 208          
BLAST of FC868508 vs. ExPASy Swiss-Prot
Match: IF4A2_NICPL (Eukaryotic initiation factor 4A-2 OS=Nicotiana plumbaginifolia PE=2 SV=1)

HSP 1 Score: 221.861 bits (564), Expect = 2.501e-57
Identity = 110/172 (63.95%), Postives = 136/172 (79.07%), Query Frame = 3
Query:  159 EAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVVLAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYR 674
            E   SFDAMG++++LLRGIY YGFEKPSAIQQR ++P  KG DVI QAQSGTGKT+     V Q +D S  E QAL+L+PTRELA Q EKV+ A+GD++ ++ HACVGG SV ED R L+ GVHVV GTPGRV DM++R++LR   IK+ VLDE+DEMLSRGFKDQIYD+++
Sbjct:   37 EVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGVLQQLDYSLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQSGVHVVVGTPGRVFDMLRRQSLRPDHIKMFVLDEADEMLSRGFKDQIYDIFQ 208          
BLAST of FC868508 vs. ExPASy Swiss-Prot
Match: IF414_TOBAC (Eukaryotic initiation factor 4A-14 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 221.861 bits (564), Expect = 2.501e-57
Identity = 110/172 (63.95%), Postives = 136/172 (79.07%), Query Frame = 3
Query:  159 EAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVVLAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYR 674
            E   SFDAMG++++LLRGIY YGFEKPSAIQQR ++P  KG DVI QAQSGTGKT+     V Q +D S  E QAL+L+PTRELA Q EKV+ A+GD++ ++ HACVGG SV ED R L+ GVHVV GTPGRV DM++R++LR   IK+ VLDE+DEMLSRGFKDQIYD+++
Sbjct:   37 EVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGVLQQLDYSLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQSGVHVVVGTPGRVFDMLRRQSLRPDHIKMFVLDEADEMLSRGFKDQIYDIFQ 208          
The following BLAST results are available for this feature:
BLAST of FC868508 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
IF4A_COCIM2.262e-5861.85ATP-dependent RNA helicase eIF4A OS=Coccidioides i... [more]
FAL1_LODEL2.954e-5856.98ATP-dependent RNA helicase FAL1 OS=Lodderomyces el... [more]
IF4A_ASPFU5.039e-5862.21ATP-dependent RNA helicase eIF4A OS=Aspergillus fu... [more]
IF4A_AJECN8.596e-5861.85ATP-dependent RNA helicase eIF4A OS=Ajellomyces ca... [more]
IF4A_NEOFI1.123e-5762.21ATP-dependent RNA helicase eIF4A OS=Neosartorya fi... [more]
IF4A_ASPCL1.123e-5762.21ATP-dependent RNA helicase eIF4A OS=Aspergillus cl... [more]
IF4A_PHANO1.915e-5761.05ATP-dependent RNA helicase eIF4A OS=Phaeosphaeria ... [more]
IF4A7_TOBAC2.501e-5763.95Eukaryotic initiation factor 4A-7 OS=Nicotiana tab... [more]
IF4A2_NICPL2.501e-5763.95Eukaryotic initiation factor 4A-2 OS=Nicotiana plu... [more]
IF414_TOBAC2.501e-5763.95Eukaryotic initiation factor 4A-14 OS=Nicotiana ta... [more]

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Properties
Property NameValue
Genbank descriptionC31001C05EF AbioticL1 Citrus clementina cDNA clone C31001C05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868508 ID=FC868508; Name=FC868508; organism=Citrus clementina; type=EST; length=677bp
GCTCACCTGGAAGAGGAAACTCTCATTGATTCTTTGATTTCGAAGAGTAA
TTGTTGCGAATTTCGTGCGAGATGGCGGCGGCGACGGCTATGCGGAGGAG
AGGAGGGGGCGGCGGAATGGATGACGACAAGATGGTGTTCGAAACAACGG
AAGGAGTGGAGGCAATCACGAGCTTCGACGCAATGGGAATAAAAGACGAT
CTGTTGCGTGGAATTTATCAGTACGGATTCGAGAAGCCATCGGCCATACA
ACAGAGGGCCGTTATGCCGATTATAAAGGGCCGTGATGTAATTGCACAGG
CCCAGTCTGGTACTGGCAAGACCTCTATGATTGCCCTAACTGTTTGCCAG
ACGGTCGATACTTCTAGCAGAGAGGTGCAGGCGTTGATTTTGTCACCTAC
GAGGGAGCTGGCGACGCAGACAGAGAAAGTGGTTTTGGCAATTGGTGATT
TTATTAACATACAAGCACATGCGTGTGTTGGAGGCAAAAGTGTCGGGGAA
GATATTAGGAAGTTAGAGCATGGAGTTCATGTGGTGTCTGGAACTCCGGG
TAGAGTCTGTGATATGATTAAGAGGAAAACTTTGCGTACTAGAGCTATTA
AATTATTGGTGCTTGATGAGTCTGATGAGATGCTGAGCAGAGGGTTCAAG
GATCAAATTTATGATGTGTACCGTTAT
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