FC868508

Overview
NameFC868508
Unique NameFC868508
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length677
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868508 vs. ExPASy Swiss-Prot
Match: IF413_TOBAC (Eukaryotic initiation factor 4A-13 (Fragment) OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 221.861 bits (564), Expect = 2.501e-57
Identity = 110/172 (63.95%), Postives = 136/172 (79.07%), Query Frame = 3
Query:  159 EAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVVLAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYR 674
            E   SFDAMG++++LLRGIY YGFEKPSAIQQR ++P  KG DVI QAQSGTGKT+     V Q +D S  E QAL+L+PTRELA Q EKV+ A+GD++ ++ HACVGG SV ED R L+ GVHVV GTPGRV DM++R++LR   IK+ VLDE+DEMLSRGFKDQIYD+++
Sbjct:   37 EVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGVLQQLDYSLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQSGVHVVVGTPGRVFDMLRRQSLRPDHIKMFVLDEADEMLSRGFKDQIYDIFQ 208          
BLAST of FC868508 vs. ExPASy Swiss-Prot
Match: IF410_TOBAC (Eukaryotic initiation factor 4A-10 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 221.861 bits (564), Expect = 2.501e-57
Identity = 110/172 (63.95%), Postives = 136/172 (79.07%), Query Frame = 3
Query:  159 EAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVVLAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYR 674
            E   SFDAMG++++LLRGIY YGFEKPSAIQQR ++P  KG DVI QAQSGTGKT+     V Q +D S  E QAL+L+PTRELA Q EKV+ A+GD++ ++ HACVGG SV ED R L+ GVHVV GTPGRV DM++R++LR   IK+ VLDE+DEMLSRGFKDQIYD+++
Sbjct:   37 EVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGVLQQLDYSLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQSGVHVVVGTPGRVFDMLRRQSLRPDHIKMFVLDEADEMLSRGFKDQIYDIFQ 208          
BLAST of FC868508 vs. ExPASy Swiss-Prot
Match: IF411_TOBAC (Eukaryotic initiation factor 4A-11 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 221.476 bits (563), Expect = 3.266e-57
Identity = 109/172 (63.37%), Postives = 136/172 (79.07%), Query Frame = 3
Query:  159 EAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVVLAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYR 674
            E   SFDAMG++++LLRGIY YGFEKPSAIQQR ++P  KG DVI QAQSGTGKT+     + Q +D S  E QAL+L+PTRELA Q EKV+ A+GD++ ++ HACVGG SV ED R L+ GVHVV GTPGRV DM++R++LR   IK+ VLDE+DEMLSRGFKDQIYD+++
Sbjct:   37 EVYESFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYSLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQSGVHVVVGTPGRVFDMLRRQSLRPDNIKMFVLDEADEMLSRGFKDQIYDIFQ 208          
BLAST of FC868508 vs. ExPASy Swiss-Prot
Match: IF4A_CRYNE (ATP-dependent RNA helicase eIF4A OS=Cryptococcus neoformans GN=TIF1 PE=3 SV=1)

HSP 1 Score: 220.705 bits (561), Expect = 5.571e-57
Identity = 101/172 (58.72%), Postives = 137/172 (79.65%), Query Frame = 3
Query:  159 EAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVVLAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYR 674
            E + +FD M +K +LLRGIY YGFE+PSAIQQRA+MPI+ GRD IAQAQSGTGKT+  ++++ Q +DT+ ++ QAL+L+PTRELA Q +KVV+A+GD++N+  HACVGG +V EDI +L  G H+V GTPGRV DMI R  L+T A+ +  LDE+DEMLS GFK+ IY++++
Sbjct:   25 EVVDNFDDMKLKGELLRGIYAYGFERPSAIQQRAIMPIVTGRDCIAQAQSGTGKTATFSVSILQRIDTTVKKTQALVLAPTRELAQQIQKVVIALGDYLNVDCHACVGGTAVREDIARLNEGPHIVVGTPGRVFDMINRGALKTEAVMMFCLDEADEMLSTGFKESIYEIFQ 196          
BLAST of FC868508 vs. ExPASy Swiss-Prot
Match: IF4A1_ARATH (Eukaryotic initiation factor 4A-1 OS=Arabidopsis thaliana GN=TIF4A-1 PE=1 SV=1)

HSP 1 Score: 220.705 bits (561), Expect = 5.571e-57
Identity = 109/168 (64.88%), Postives = 135/168 (80.36%), Query Frame = 3
Query:  171 SFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVVLAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYR 674
            SFDAMG++++LLRGIY YGFEKPSAIQQR ++P  KG DVI QAQSGTGKT+     V Q +D S  + QAL+L+PTRELA Q EKV+ A+GD++ ++ HACVGG SV ED R L+ GVHVV GTPGRV DM+KR++LR   IK+ VLDE+DEMLSRGFKDQIYD+++
Sbjct:   40 SFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGVLQQLDFSLIQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLKRQSLRADNIKMFVLDEADEMLSRGFKDQIYDIFQ 207          
BLAST of FC868508 vs. ExPASy Swiss-Prot
Match: IF4A9_TOBAC (Eukaryotic initiation factor 4A-9 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 219.55 bits (558), Expect = 1.241e-56
Identity = 108/172 (62.79%), Postives = 134/172 (77.91%), Query Frame = 3
Query:  159 EAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVVLAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYR 674
            E   SFDAMG+K++LLRGIY YGFEKPSAIQQR ++P  KG DVI QAQSGTGKT+     + Q +D    + QAL+L+PTRELA Q EKV+ A+GD++ ++ HACVGG SV ED R L  GVHVV GTPGRV DM++R++LR   IK+ VLDE+DEMLSRGFKDQIYD+++
Sbjct:   37 EVYHSFDAMGLKENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYELLDCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRRQSLRPDHIKMFVLDEADEMLSRGFKDQIYDIFQ 208          
BLAST of FC868508 vs. ExPASy Swiss-Prot
Match: IF4A3_ARATH (Eukaryotic initiation factor 4A-3 OS=Arabidopsis thaliana GN=TIF4A-3 PE=1 SV=1)

HSP 1 Score: 219.164 bits (557), Expect = 1.621e-56
Identity = 109/172 (63.37%), Postives = 135/172 (78.49%), Query Frame = 3
Query:  159 EAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVVLAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYR 674
            E   SFDAM ++ DLLRGIY YGFEKPSAIQQR ++P  KG DVI QAQSGTGKT+     V Q +D S  + QAL+L+PTRELA Q EKV+ A+GD++ ++A ACVGG SV ED R L+ GVHVV GTPGRV D+++R++LR  AIK+ VLDE+DEMLSRGFKDQIYD+++
Sbjct:   38 EVCDSFDAMELQPDLLRGIYAYGFEKPSAIQQRGIIPFCKGLDVIQQAQSGTGKTATFCSGVLQQLDISLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKAQACVGGTSVREDQRVLQSGVHVVVGTPGRVFDLLRRQSLRADAIKMFVLDEADEMLSRGFKDQIYDIFQ 209          
BLAST of FC868508 vs. ExPASy Swiss-Prot
Match: IF4A_EMENI (ATP-dependent RNA helicase eIF4A OS=Emericella nidulans GN=tif1 PE=3 SV=1)

HSP 1 Score: 218.394 bits (555), Expect = 2.765e-56
Identity = 101/172 (58.72%), Postives = 138/172 (80.23%), Query Frame = 3
Query:  159 EAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVVLAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYR 674
            E   SFD+M +K +LLRG+Y YGFE+PSAIQQRA++PI+KG DVIAQAQSGTGKT+  +++  Q +D + +  QALI++PTRELA Q +KVV+AIGDF+NIQ HAC+GG +V +D+  L  G  +V GTPGR+ DMI+R+ L+T  +K+ +LDE+DEMLSRGF +QIYD+++
Sbjct:   45 EITDSFDSMELKPELLRGVYAYGFERPSAIQQRAILPIVKGNDVIAQAQSGTGKTATFSISALQKLDPNVKACQALIVAPTRELAQQIQKVVIAIGDFMNIQCHACIGGTAVRDDMNALREGPQIVVGTPGRIHDMIQRRVLKTDQMKMFILDEADEMLSRGFTEQIYDIFQ 216          
BLAST of FC868508 vs. ExPASy Swiss-Prot
Match: IF4A_ASPTN (ATP-dependent RNA helicase eIF4A OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=tif1 PE=3 SV=2)

HSP 1 Score: 218.394 bits (555), Expect = 2.765e-56
Identity = 101/168 (60.12%), Postives = 138/168 (82.14%), Query Frame = 3
Query:  171 SFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVVLAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYR 674
            SFD+M +K +LLRG+Y YGFE+PSAIQQRA+MPIIKG DVIAQAQSGTGKT+  +++  Q +D + +  QALI++PTRELA Q +KVV+AIGDF+NI  HAC+GG ++ +D++ L+ G  +V GTPGR+ DMI+R+ L+T  +KL +LDE+DEMLSRGF +QIYD+++
Sbjct:   24 SFDSMELKAELLRGVYAYGFERPSAIQQRAIMPIIKGNDVIAQAQSGTGKTATFSISALQKIDPNLKACQALIVAPTRELAQQIQKVVVAIGDFMNINCHACIGGTAIRDDMKALQEGPPIVVGTPGRIQDMIQRRVLKTDQMKLFILDEADEMLSRGFTEQIYDIFQ 191          
BLAST of FC868508 vs. ExPASy Swiss-Prot
Match: IF4A_USTMA (ATP-dependent RNA helicase eIF4A OS=Ustilago maydis GN=TIF1 PE=3 SV=1)

HSP 1 Score: 218.009 bits (554), Expect = 3.611e-56
Identity = 102/170 (60.00%), Postives = 135/170 (79.41%), Query Frame = 3
Query:  165 ITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVVLAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYR 674
            I +FD M +K++LLRG+Y YGFE+PSAIQ RA++P+IKG DVIAQAQSGTGKT+  ++ + Q +D S + VQALIL+PTRELA Q +KVV+A+GD++ I  HAC+GG +V ED+ KL  G  VV GTPGRV DMI R+  +T  +K+  LDE+DEMLSRGFKDQ+Y+V++
Sbjct:   37 IDNFDNMELKEELLRGVYAYGFERPSAIQARAIVPVIKGHDVIAQAQSGTGKTATFSIAILQRIDPSIKAVQALILAPTRELAQQIQKVVIALGDYMKIDCHACIGGTNVREDMAKLNEGAQVVVGTPGRVYDMINRRAFKTDQLKMFCLDEADEMLSRGFKDQMYEVFQ 206          
The following BLAST results are available for this feature:
BLAST of FC868508 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
IF413_TOBAC2.501e-5763.95Eukaryotic initiation factor 4A-13 (Fragment) OS=N... [more]
IF410_TOBAC2.501e-5763.95Eukaryotic initiation factor 4A-10 OS=Nicotiana ta... [more]
IF411_TOBAC3.266e-5763.37Eukaryotic initiation factor 4A-11 OS=Nicotiana ta... [more]
IF4A_CRYNE5.571e-5758.72ATP-dependent RNA helicase eIF4A OS=Cryptococcus n... [more]
IF4A1_ARATH5.571e-5764.88Eukaryotic initiation factor 4A-1 OS=Arabidopsis t... [more]
IF4A9_TOBAC1.241e-5662.79Eukaryotic initiation factor 4A-9 OS=Nicotiana tab... [more]
IF4A3_ARATH1.621e-5663.37Eukaryotic initiation factor 4A-3 OS=Arabidopsis t... [more]
IF4A_EMENI2.765e-5658.72ATP-dependent RNA helicase eIF4A OS=Emericella nid... [more]
IF4A_ASPTN2.765e-5660.12ATP-dependent RNA helicase eIF4A OS=Aspergillus te... [more]
IF4A_USTMA3.611e-5660.00ATP-dependent RNA helicase eIF4A OS=Ustilago maydi... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC31001C05EF AbioticL1 Citrus clementina cDNA clone C31001C05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868508 ID=FC868508; Name=FC868508; organism=Citrus clementina; type=EST; length=677bp
GCTCACCTGGAAGAGGAAACTCTCATTGATTCTTTGATTTCGAAGAGTAA
TTGTTGCGAATTTCGTGCGAGATGGCGGCGGCGACGGCTATGCGGAGGAG
AGGAGGGGGCGGCGGAATGGATGACGACAAGATGGTGTTCGAAACAACGG
AAGGAGTGGAGGCAATCACGAGCTTCGACGCAATGGGAATAAAAGACGAT
CTGTTGCGTGGAATTTATCAGTACGGATTCGAGAAGCCATCGGCCATACA
ACAGAGGGCCGTTATGCCGATTATAAAGGGCCGTGATGTAATTGCACAGG
CCCAGTCTGGTACTGGCAAGACCTCTATGATTGCCCTAACTGTTTGCCAG
ACGGTCGATACTTCTAGCAGAGAGGTGCAGGCGTTGATTTTGTCACCTAC
GAGGGAGCTGGCGACGCAGACAGAGAAAGTGGTTTTGGCAATTGGTGATT
TTATTAACATACAAGCACATGCGTGTGTTGGAGGCAAAAGTGTCGGGGAA
GATATTAGGAAGTTAGAGCATGGAGTTCATGTGGTGTCTGGAACTCCGGG
TAGAGTCTGTGATATGATTAAGAGGAAAACTTTGCGTACTAGAGCTATTA
AATTATTGGTGCTTGATGAGTCTGATGAGATGCTGAGCAGAGGGTTCAAG
GATCAAATTTATGATGTGTACCGTTAT
back to top