FC868508

Overview
NameFC868508
Unique NameFC868508
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length677
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13756 contig Ccv1_Contig13756:35..711. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC868508 vs. ExPASy Swiss-Prot
Match: IF4A2_ARATH (Eukaryotic initiation factor 4A-2 OS=Arabidopsis thaliana GN=TIF4A-2 PE=1 SV=1)

HSP 1 Score: 217.624 bits (553), Expect = 4.717e-56
Identity = 108/172 (62.79%), Postives = 135/172 (78.49%), Query Frame = 3
Query:  159 EAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVVLAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYR 674
            E   SFDAMG++++LLRGIY YGFEKPSAIQQR ++P  KG DVI QAQSGTGKT+     V Q +D +  + QAL+L+PTRELA Q EKV+ A+GD+  ++ HACVGG SV ED R L+ GVHVV GTPGRV DM++R++LR   IK+ VLDE+DEMLSRGFKDQIYD+++
Sbjct:   36 EVHESFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGVLQQLDYALLQCQALVLAPTRELAQQIEKVMRALGDYQGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDCIKMFVLDEADEMLSRGFKDQIYDIFQ 207          
BLAST of FC868508 vs. ExPASy Swiss-Prot
Match: IF4A_ASPOR (ATP-dependent RNA helicase eIF4A OS=Aspergillus oryzae GN=tif1 PE=3 SV=1)

HSP 1 Score: 216.853 bits (551), Expect = 8.045e-56
Identity = 106/172 (61.63%), Postives = 136/172 (79.07%), Query Frame = 3
Query:  159 EAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVVLAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYR 674
            E   SFDAM +K +LLRG+Y YGFE+PSAIQQRA+ PIIKG DVIAQAQSGTGKT+  +++  Q +D + +  QALIL+PTRELA Q +KVV+AIGDF+NI  HAC+GG +V ED++ L  G  VV GTPGRV DMI+R+ L+T  +K  +LDE+DEMLSRGF +QIYD+++
Sbjct:   45 EITDSFDAMELKPELLRGVYAYGFERPSAIQQRAIKPIIKGSDVIAQAQSGTGKTATFSISALQKLDPNVKGCQALILAPTRELAQQIQKVVVAIGDFMNITCHACIGGTAVREDMKALGEGPEVVVGTPGRVHDMIQRRVLKTDHLKQFILDEADEMLSRGFTEQIYDIFQ 216          
BLAST of FC868508 vs. ExPASy Swiss-Prot
Match: IF4A_MAIZE (Eukaryotic initiation factor 4A OS=Zea mays PE=2 SV=1)

HSP 1 Score: 216.468 bits (550), Expect = 1.051e-55
Identity = 106/168 (63.10%), Postives = 133/168 (79.17%), Query Frame = 3
Query:  171 SFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVVLAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYR 674
            SFD+MG++++LLRGIY YGFEKPSAIQQR ++P  KG DVI QAQSGTGKT+     + Q +D    E QAL+L+PTRELA Q EKV+ A+GD++ ++ HACVGG SV ED R L  GVHVV GTPGRV DM++R++LR   IK+ VLDE+DEMLSRGFKDQIYD+++
Sbjct:   38 SFDSMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILASGVHVVVGTPGRVFDMLRRQSLRPDNIKMFVLDEADEMLSRGFKDQIYDIFQ 205          
BLAST of FC868508 vs. ExPASy Swiss-Prot
Match: IF4A1_ORYSJ (Eukaryotic initiation factor 4A-1 OS=Oryza sativa subsp. japonica GN=Os06g0701100 PE=2 SV=2)

HSP 1 Score: 216.083 bits (549), Expect = 1.372e-55
Identity = 107/172 (62.21%), Postives = 134/172 (77.91%), Query Frame = 3
Query:  159 EAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVVLAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYR 674
            E   SFD MG++++LLRGIY YGFEKPSAIQQR ++P  KG DVI QAQSGTGKT+     + Q +D +  E QAL+L+PTRELA Q EKV+ A+GD++ ++ HACVGG SV ED R L  GVHVV GTPGRV DM++R++LR   IK+ VLDE+DEMLSRGFKDQIYD+++
Sbjct:   38 EVHESFDDMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYAVVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILASGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQ 209          
BLAST of FC868508 vs. ExPASy Swiss-Prot
Match: IF4A3_ORYSJ (Eukaryotic initiation factor 4A-3 OS=Oryza sativa subsp. japonica GN=Os02g0146600 PE=2 SV=1)

HSP 1 Score: 215.698 bits (548), Expect = 1.792e-55
Identity = 106/172 (61.63%), Postives = 133/172 (77.33%), Query Frame = 3
Query:  159 EAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVVLAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYR 674
            E   SFD MG++++LLRGIY YGFEKPSAIQQR ++P  KG DVI QAQSGTGKT+     + Q +D    E Q+L+L+PTRELA Q EKV+ A+GD++ ++ HACVGG SV ED R L  GVHVV GTPGRV DM++R++LR   IK+ VLDE+DEMLSRGFKDQIYD+++
Sbjct:   38 EVFESFDDMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQSLVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILASGVHVVVGTPGRVFDMLRRQSLRPDHIKMFVLDEADEMLSRGFKDQIYDIFQ 209          
BLAST of FC868508 vs. ExPASy Swiss-Prot
Match: IF4A_ASPNC (ATP-dependent RNA helicase eIF4A OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=tif1 PE=3 SV=1)

HSP 1 Score: 215.312 bits (547), Expect = 2.341e-55
Identity = 102/172 (59.30%), Postives = 135/172 (78.49%), Query Frame = 3
Query:  159 EAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVVLAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYR 674
            E   SFD+M +K +LLRG+Y YGFE+PSAIQQRA+ PII G DVIAQAQSGTGKT+  +++  Q +D   +  QALI++PTRELA Q +KVV+AIGDF+NI+ HAC+GG +V +D+  L  G  VV GTPGR+ DMI+R+ L+T  +KL +LDE+DEMLSRGF +QIYD+++
Sbjct:   22 EVTDSFDSMDLKPELLRGVYAYGFERPSAIQQRAIKPIIAGHDVIAQAQSGTGKTATFSISALQKIDQELKACQALIVAPTRELAQQIQKVVVAIGDFMNIECHACIGGTNVRDDMNALRAGPQVVVGTPGRIHDMIERRVLKTDQMKLFILDEADEMLSRGFTEQIYDIFQ 193          
BLAST of FC868508 vs. ExPASy Swiss-Prot
Match: IF4A8_TOBAC (Eukaryotic initiation factor 4A-8 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 214.927 bits (546), Expect = 3.057e-55
Identity = 104/172 (60.47%), Postives = 134/172 (77.91%), Query Frame = 3
Query:  159 EAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVVLAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYR 674
            E   SFDAMG++++LLRGIY YGFEKPSAIQQR ++P  KG DVI QAQSGTGKT+     + Q +D    + QAL+L+PTRELA Q EKV+ A+GD++ ++ HACVGG SV ED R L  GVHV+ GTPGRV DM++R++LR   +++ VLDE+DEMLSRGFKDQIYD+++
Sbjct:   37 EVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILAAGVHVIVGTPGRVFDMLRRQSLRPDYLRMFVLDEADEMLSRGFKDQIYDIFQ 208          
BLAST of FC868508 vs. ExPASy Swiss-Prot
Match: IF4A_WHEAT (Eukaryotic initiation factor 4A OS=Triticum aestivum PE=2 SV=1)

HSP 1 Score: 214.542 bits (545), Expect = 3.993e-55
Identity = 106/172 (61.63%), Postives = 133/172 (77.33%), Query Frame = 3
Query:  159 EAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVVLAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYR 674
            E   SFD MG++++LLRGIY YGFEKPSAIQQR ++P  KG DVI QAQSGTGKT+     + Q +D    E QAL+L+PTRELA Q EKV+ A+GD++ ++ HACVGG SV ED R L  GVHVV GTPGRV D+++R++LR   IK+ VLDE+DEMLSRGFKDQIYD+++
Sbjct:   38 EVHESFDDMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILASGVHVVVGTPGRVFDIVRRQSLRPDNIKMFVLDEADEMLSRGFKDQIYDIFQ 209          
BLAST of FC868508 vs. ExPASy Swiss-Prot
Match: IF4A_CAEEL (Eukaryotic initiation factor 4A OS=Caenorhabditis elegans GN=inf-1 PE=2 SV=1)

HSP 1 Score: 213.772 bits (543), Expect = 6.811e-55
Identity = 102/172 (59.30%), Postives = 135/172 (78.49%), Query Frame = 3
Query:  159 EAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVVLAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYR 674
            + + SFD M +K++LLRGIY +GFEKPSAIQ+RA++P   G+DVIAQAQSGTGKT+  ++++ Q +D     VQAL+++PTRELA Q +KV+ A+G+++N+    C+GG SV +D RKLE G+HVV GTPGRV DMI R  L T  IK+ VLDE+DEMLSRGFKDQIY+V+R
Sbjct:   26 QVVESFDDMELKEELLRGIYGFGFEKPSAIQKRAIVPCTTGKDVIAQAQSGTGKTATFSVSILQRIDHEDPHVQALVMAPTRELAQQIQKVMSALGEYLNVNILPCIGGTSVRDDQRKLEAGIHVVVGTPGRVGDMINRNALDTSRIKMFVLDEADEMLSRGFKDQIYEVFR 197          
BLAST of FC868508 vs. ExPASy Swiss-Prot
Match: FAL1_KLULA (ATP-dependent RNA helicase FAL1 OS=Kluyveromyces lactis GN=FAL1 PE=3 SV=1)

HSP 1 Score: 213.386 bits (542), Expect = 8.895e-55
Identity = 102/183 (55.74%), Postives = 141/183 (77.05%), Query Frame = 3
Query:  129 KMVFETTEGVEAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVVLAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSR--GFKDQIYDVY 671
            K+ F+T++ ++   +F++M +K DLLRGIY YGFE PS+IQ RA+  II G+DVIAQAQSGTGKT+   + + Q +D+ S+E+QAL+LSPTRELA+Q+E V+  +GD++N+ AHAC GGK++ +DI+K+     VVSGTPGRV DMIKR+ L  R  K+LVLDE+DE+L    GFK QIYD++
Sbjct:   10 KLKFKTSKKLKVSATFESMNLKPDLLRGIYFYGFEYPSSIQSRAISQIISGKDVIAQAQSGTGKTATFTIGLLQAIDSKSKELQALVLSPTRELASQSESVISNLGDYLNVTAHACTGGKALQQDIKKVSKNCQVVSGTPGRVLDMIKRQVLNVRNCKILVLDEADELLGETLGFKQQIYDIF 192          
The following BLAST results are available for this feature:
BLAST of FC868508 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
IF4A2_ARATH4.717e-5662.79Eukaryotic initiation factor 4A-2 OS=Arabidopsis t... [more]
IF4A_ASPOR8.045e-5661.63ATP-dependent RNA helicase eIF4A OS=Aspergillus or... [more]
IF4A_MAIZE1.051e-5563.10Eukaryotic initiation factor 4A OS=Zea mays PE=2 S... [more]
IF4A1_ORYSJ1.372e-5562.21Eukaryotic initiation factor 4A-1 OS=Oryza sativa ... [more]
IF4A3_ORYSJ1.792e-5561.63Eukaryotic initiation factor 4A-3 OS=Oryza sativa ... [more]
IF4A_ASPNC2.341e-5559.30ATP-dependent RNA helicase eIF4A OS=Aspergillus ni... [more]
IF4A8_TOBAC3.057e-5560.47Eukaryotic initiation factor 4A-8 OS=Nicotiana tab... [more]
IF4A_WHEAT3.993e-5561.63Eukaryotic initiation factor 4A OS=Triticum aestiv... [more]
IF4A_CAEEL6.811e-5559.30Eukaryotic initiation factor 4A OS=Caenorhabditis ... [more]
FAL1_KLULA8.895e-5555.74ATP-dependent RNA helicase FAL1 OS=Kluyveromyces l... [more]

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Properties
Property NameValue
Genbank descriptionC31001C05EF AbioticL1 Citrus clementina cDNA clone C31001C05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868508 ID=FC868508; Name=FC868508; organism=Citrus clementina; type=EST; length=677bp
GCTCACCTGGAAGAGGAAACTCTCATTGATTCTTTGATTTCGAAGAGTAA
TTGTTGCGAATTTCGTGCGAGATGGCGGCGGCGACGGCTATGCGGAGGAG
AGGAGGGGGCGGCGGAATGGATGACGACAAGATGGTGTTCGAAACAACGG
AAGGAGTGGAGGCAATCACGAGCTTCGACGCAATGGGAATAAAAGACGAT
CTGTTGCGTGGAATTTATCAGTACGGATTCGAGAAGCCATCGGCCATACA
ACAGAGGGCCGTTATGCCGATTATAAAGGGCCGTGATGTAATTGCACAGG
CCCAGTCTGGTACTGGCAAGACCTCTATGATTGCCCTAACTGTTTGCCAG
ACGGTCGATACTTCTAGCAGAGAGGTGCAGGCGTTGATTTTGTCACCTAC
GAGGGAGCTGGCGACGCAGACAGAGAAAGTGGTTTTGGCAATTGGTGATT
TTATTAACATACAAGCACATGCGTGTGTTGGAGGCAAAAGTGTCGGGGAA
GATATTAGGAAGTTAGAGCATGGAGTTCATGTGGTGTCTGGAACTCCGGG
TAGAGTCTGTGATATGATTAAGAGGAAAACTTTGCGTACTAGAGCTATTA
AATTATTGGTGCTTGATGAGTCTGATGAGATGCTGAGCAGAGGGTTCAAG
GATCAAATTTATGATGTGTACCGTTAT
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