FC868508

Overview
NameFC868508
Unique NameFC868508
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length677
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13756 contig Ccv1_Contig13756:35..711. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC868508 vs. ExPASy Swiss-Prot
Match: IF4A1_MACFA (Eukaryotic initiation factor 4A-I OS=Macaca fascicularis GN=EIF4A1 PE=2 SV=1)

HSP 1 Score: 210.69 bits (535), Expect = 5.766e-54
Identity = 99/173 (57.23%), Postives = 134/173 (77.46%), Query Frame = 3
Query:  159 EAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVVLAIGDFINIQAHACVGGKSVGEDIRKLE-HGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYR 674
            E + SFD M + + LLRGIY YGFEKPSAIQQRA++P IKG DVIAQAQSGTGKT+  A+++ Q ++   +  QAL+L+PTRELA Q +KVV+A+GD++    HAC+GG +V  +++KL+    H++ GTPGRV DM+ R+ L  + IK+ VLDE+DEMLSRGFKDQIYD+++
Sbjct:   29 EIVDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQ 201          
BLAST of FC868508 vs. ExPASy Swiss-Prot
Match: IF4A1_HUMAN (Eukaryotic initiation factor 4A-I OS=Homo sapiens GN=EIF4A1 PE=1 SV=1)

HSP 1 Score: 210.69 bits (535), Expect = 5.766e-54
Identity = 99/173 (57.23%), Postives = 134/173 (77.46%), Query Frame = 3
Query:  159 EAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVVLAIGDFINIQAHACVGGKSVGEDIRKLE-HGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYR 674
            E + SFD M + + LLRGIY YGFEKPSAIQQRA++P IKG DVIAQAQSGTGKT+  A+++ Q ++   +  QAL+L+PTRELA Q +KVV+A+GD++    HAC+GG +V  +++KL+    H++ GTPGRV DM+ R+ L  + IK+ VLDE+DEMLSRGFKDQIYD+++
Sbjct:   29 EIVDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQ 201          
BLAST of FC868508 vs. ExPASy Swiss-Prot
Match: IF4A1_BOVIN (Eukaryotic initiation factor 4A-I OS=Bos taurus GN=EIF4A1 PE=2 SV=1)

HSP 1 Score: 210.69 bits (535), Expect = 5.766e-54
Identity = 99/173 (57.23%), Postives = 134/173 (77.46%), Query Frame = 3
Query:  159 EAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVVLAIGDFINIQAHACVGGKSVGEDIRKLE-HGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYR 674
            E + SFD M + + LLRGIY YGFEKPSAIQQRA++P IKG DVIAQAQSGTGKT+  A+++ Q ++   +  QAL+L+PTRELA Q +KVV+A+GD++    HAC+GG +V  +++KL+    H++ GTPGRV DM+ R+ L  + IK+ VLDE+DEMLSRGFKDQIYD+++
Sbjct:   29 EIVDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQ 201          
BLAST of FC868508 vs. ExPASy Swiss-Prot
Match: FAL1_ASHGO (ATP-dependent RNA helicase FAL1 OS=Ashbya gossypii GN=FAL1 PE=3 SV=1)

HSP 1 Score: 208.379 bits (529), Expect = 2.861e-53
Identity = 100/183 (54.64%), Postives = 142/183 (77.60%), Query Frame = 3
Query:  129 KMVFETTEGVEAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVVLAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSR--GFKDQIYDVY 671
            K+  +T+  +    +F++M ++++LLRGIY YGFE PSAIQ RA+  II+G+DVIAQAQSGTGKT+   + + Q +D+SS+++QAL+LSPTRELA Q  +VV  +GD++N+ A AC GGK++ +DI K+  G HV+SGTPGRV DMIKR+ + TR +K+LVLDE+DE+LS   GFK Q+YD++
Sbjct:   10 KLKVKTSSKLPVSPTFESMKLQENLLRGIYGYGFEAPSAIQSRAITQIIRGKDVIAQAQSGTGKTATFTIGMLQVIDSSSKDLQALVLSPTRELAAQISQVVRNLGDYMNVVALACTGGKALQQDISKVNKGCHVMSGTPGRVLDMIKRRIINTRHVKMLVLDEADELLSETLGFKQQLYDIF 192          
BLAST of FC868508 vs. ExPASy Swiss-Prot
Match: IF4A2_MACFA (Eukaryotic initiation factor 4A-II OS=Macaca fascicularis GN=EIF4A2 PE=2 SV=1)

HSP 1 Score: 207.994 bits (528), Expect = 3.737e-53
Identity = 99/173 (57.23%), Postives = 135/173 (78.03%), Query Frame = 3
Query:  159 EAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVVLAIGDFINIQAHACVGGKSVGEDIRKLE-HGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYR 674
            E + +FD M +K+ LLRGIY YGFEKPSAIQQRA++P IKG DVIAQAQSGTGKT+  A+++ Q ++   +E QAL+L+PTRELA Q +KV+LA+GD++    HAC+GG +V  +++KL+    H+V GTPGRV DM+ R+ L  + IK+ VLDE+D MLSRGFKDQIY++++
Sbjct:   31 EIVDNFDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEIEFKETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADGMLSRGFKDQIYEIFQ 203          
BLAST of FC868508 vs. ExPASy Swiss-Prot
Match: FAL1_YEAST (ATP-dependent RNA helicase FAL1 OS=Saccharomyces cerevisiae GN=FAL1 PE=1 SV=1)

HSP 1 Score: 206.838 bits (525), Expect = 8.325e-53
Identity = 100/184 (54.35%), Postives = 144/184 (78.26%), Query Frame = 3
Query:  129 KMVFETTEGVEAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVVLAIGDFINIQAHACVGGKSVGEDIRKLE-HGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSR--GFKDQIYDVY 671
            K+ F+T++ ++  ++F++M +KDDLLRGIY YGFE PS+IQ RA+  II G+DVIAQAQSGTGKT+   + + Q +D   +++QALILSPTRELA+Q  +VV  +GD++N+ A A  GGK++ +D++K++ HG   VSGTPGRV DMIK++ L+TR +++LVLDE+DE+LS   GFK QIYD++
Sbjct:   10 KLKFKTSKKLKVSSTFESMNLKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAIDLRKKDLQALILSPTRELASQIGQVVKNLGDYMNVNAFAITGGKTLKDDLKKMQKHGCQAVSGTPGRVLDMIKKQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIF 193          
BLAST of FC868508 vs. ExPASy Swiss-Prot
Match: FAL1_YEAS7 (ATP-dependent RNA helicase FAL1 OS=Saccharomyces cerevisiae (strain YJM789) GN=FAL1 PE=3 SV=1)

HSP 1 Score: 206.838 bits (525), Expect = 8.325e-53
Identity = 100/184 (54.35%), Postives = 144/184 (78.26%), Query Frame = 3
Query:  129 KMVFETTEGVEAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVVLAIGDFINIQAHACVGGKSVGEDIRKLE-HGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSR--GFKDQIYDVY 671
            K+ F+T++ ++  ++F++M +KDDLLRGIY YGFE PS+IQ RA+  II G+DVIAQAQSGTGKT+   + + Q +D   +++QALILSPTRELA+Q  +VV  +GD++N+ A A  GGK++ +D++K++ HG   VSGTPGRV DMIK++ L+TR +++LVLDE+DE+LS   GFK QIYD++
Sbjct:   10 KLKFKTSKKLKVSSTFESMNLKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAIDLRKKDLQALILSPTRELASQIGQVVKNLGDYMNVNAFAITGGKTLKDDLKKMQKHGCQAVSGTPGRVLDMIKKQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIF 193          
BLAST of FC868508 vs. ExPASy Swiss-Prot
Match: IF4A1_PONAB (Eukaryotic initiation factor 4A-I OS=Pongo abelii GN=EIF4A1 PE=2 SV=1)

HSP 1 Score: 205.297 bits (521), Expect = 2.422e-52
Identity = 97/173 (56.07%), Postives = 132/173 (76.30%), Query Frame = 3
Query:  159 EAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVVLAIGDFINIQAHACVGGKSVGEDIRKLE-HGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYR 674
            E + S D M + + LLRGIY YGFEKPSAIQQRA++  IKG DVIAQAQSGTGKT+  A+++ Q ++   +  QAL+L+PTRELA Q +KVV+A+GD++    HAC+GG +V  +++KL+    H++ GTPGRV DM+ R+ L  + IK+ VLDE+DEMLSRGFKDQIYD+++
Sbjct:   29 EIVDSLDDMNLSESLLRGIYAYGFEKPSAIQQRAILSCIKGYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQ 201          
BLAST of FC868508 vs. ExPASy Swiss-Prot
Match: FAL1_PHANO (ATP-dependent RNA helicase FAL1 OS=Phaeosphaeria nodorum GN=FAL1 PE=3 SV=3)

HSP 1 Score: 205.297 bits (521), Expect = 2.422e-52
Identity = 98/183 (53.55%), Postives = 134/183 (73.22%), Query Frame = 3
Query:  129 KMVFETTEGVEAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVVLAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRY 677
            KM F T++ V    +F+AM +K++LLRGIY YG+E PSA+Q RA++ + KGRD IAQAQSGTGKT+  ++++ Q+V                         ++ +GD++N+Q HAC+GG +VGEDIRKL++G HVVSGTPGRV DMI+R+ LRTR IK+LVLDE+DE+L+RGF++QIYDVYRY
Sbjct:   12 KMEFSTSKEVTVAPTFEAMHLKENLLRGIYAYGYESPSAVQSRAIVQVCKGRDTIAQAQSGTGKTATFSISILQSV-------------------------IMGLGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVSGTPGRVADMIRRRNLRTRNIKMLVLDEADELLNRGFREQIYDVYRY 169          
BLAST of FC868508 vs. ExPASy Swiss-Prot
Match: FAL1_CANGA (ATP-dependent RNA helicase FAL1 OS=Candida glabrata GN=FAL1 PE=3 SV=1)

HSP 1 Score: 203.756 bits (517), Expect = 7.048e-52
Identity = 98/184 (53.26%), Postives = 142/184 (77.17%), Query Frame = 3
Query:  129 KMVFETTEGVEAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVVLAIGDFINIQAHACVGGKSVGEDIRKLE-HGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLS--RGFKDQIYDVY 671
            K+ F++++ ++   +F++M +K+ LLRGIY YGFE PSAIQ RA+  II G+DVIAQAQSGTGKT+   + + Q +D    ++QAL+LSPTRELA Q  KVV  +GD++N++A+A  GGK++ +D++K++ HG  V+SGTPGRV DMIKR+ + TR +++LVLDE+DE+LS   GFK QIYD++
Sbjct:   10 KLKFKSSKKLKISATFESMDLKEGLLRGIYSYGFEAPSAIQSRAITQIISGKDVIAQAQSGTGKTATFTIGMLQAIDLKKHDLQALVLSPTRELAAQIGKVVTNLGDYMNVKAYAMTGGKTMKDDLKKIQKHGCQVISGTPGRVLDMIKRRLIETRHVQILVLDEADELLSDTLGFKHQIYDIF 193          
The following BLAST results are available for this feature:
BLAST of FC868508 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
IF4A1_MACFA5.766e-5457.23Eukaryotic initiation factor 4A-I OS=Macaca fascic... [more]
IF4A1_HUMAN5.766e-5457.23Eukaryotic initiation factor 4A-I OS=Homo sapiens ... [more]
IF4A1_BOVIN5.766e-5457.23Eukaryotic initiation factor 4A-I OS=Bos taurus GN... [more]
FAL1_ASHGO2.861e-5354.64ATP-dependent RNA helicase FAL1 OS=Ashbya gossypii... [more]
IF4A2_MACFA3.737e-5357.23Eukaryotic initiation factor 4A-II OS=Macaca fasci... [more]
FAL1_YEAST8.325e-5354.35ATP-dependent RNA helicase FAL1 OS=Saccharomyces c... [more]
FAL1_YEAS78.325e-5354.35ATP-dependent RNA helicase FAL1 OS=Saccharomyces c... [more]
IF4A1_PONAB2.422e-5256.07Eukaryotic initiation factor 4A-I OS=Pongo abelii ... [more]
FAL1_PHANO2.422e-5253.55ATP-dependent RNA helicase FAL1 OS=Phaeosphaeria n... [more]
FAL1_CANGA7.048e-5253.26ATP-dependent RNA helicase FAL1 OS=Candida glabrat... [more]

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Properties
Property NameValue
Genbank descriptionC31001C05EF AbioticL1 Citrus clementina cDNA clone C31001C05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868508 ID=FC868508; Name=FC868508; organism=Citrus clementina; type=EST; length=677bp
GCTCACCTGGAAGAGGAAACTCTCATTGATTCTTTGATTTCGAAGAGTAA
TTGTTGCGAATTTCGTGCGAGATGGCGGCGGCGACGGCTATGCGGAGGAG
AGGAGGGGGCGGCGGAATGGATGACGACAAGATGGTGTTCGAAACAACGG
AAGGAGTGGAGGCAATCACGAGCTTCGACGCAATGGGAATAAAAGACGAT
CTGTTGCGTGGAATTTATCAGTACGGATTCGAGAAGCCATCGGCCATACA
ACAGAGGGCCGTTATGCCGATTATAAAGGGCCGTGATGTAATTGCACAGG
CCCAGTCTGGTACTGGCAAGACCTCTATGATTGCCCTAACTGTTTGCCAG
ACGGTCGATACTTCTAGCAGAGAGGTGCAGGCGTTGATTTTGTCACCTAC
GAGGGAGCTGGCGACGCAGACAGAGAAAGTGGTTTTGGCAATTGGTGATT
TTATTAACATACAAGCACATGCGTGTGTTGGAGGCAAAAGTGTCGGGGAA
GATATTAGGAAGTTAGAGCATGGAGTTCATGTGGTGTCTGGAACTCCGGG
TAGAGTCTGTGATATGATTAAGAGGAAAACTTTGCGTACTAGAGCTATTA
AATTATTGGTGCTTGATGAGTCTGATGAGATGCTGAGCAGAGGGTTCAAG
GATCAAATTTATGATGTGTACCGTTAT
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