FC868512

Overview
NameFC868512
Unique NameFC868512
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length727
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9343 contig Ccv1_Contig9343:1..728. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC868512 vs. ExPASy Swiss-Prot
Match: CB215_PEA (Chlorophyll a-b binding protein 215, chloroplastic OS=Pisum sativum GN=CAB215 PE=1 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 9.874e-26
Identity = 55/103 (53.40%), Postives = 68/103 (66.02%), Query Frame = 2
Query:  371 ESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHFVEPVWWRVGYSKLQGETLDYLG 679
            ES+WYG +RP++LGP     PSYLTGE PGDYG+D AGLS DP  F +    E++H+RWAMLGALG   PE+L+  G   F E VW++ G        LDYLG
Sbjct:   46 ESIWYGPDRPKYLGPFSEQIPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCTFPELLEKNGV-KFGEAVWFKAGSQIFAEGGLDYLG 147          
BLAST of FC868512 vs. ExPASy Swiss-Prot
Match: CB23_ORYSJ (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. japonica GN=RCABP89 PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.290e-25
Identity = 54/103 (52.43%), Postives = 68/103 (66.02%), Query Frame = 2
Query:  371 ESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHFVEPVWWRVGYSKLQGETLDYLG 679
            +S+WYG +RP++LGP     PSYLTGE PGDYG+D AGLS DP  F +    E++H+RWAMLGALG + PE+L   G   F E VW++ G        LDYLG
Sbjct:   44 QSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILSKNGV-KFGEAVWFKAGAQIFSEGGLDYLG 145          
BLAST of FC868512 vs. ExPASy Swiss-Prot
Match: CB23_ORYSI (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. indica GN=OsI_012078 PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.290e-25
Identity = 54/103 (52.43%), Postives = 68/103 (66.02%), Query Frame = 2
Query:  371 ESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHFVEPVWWRVGYSKLQGETLDYLG 679
            +S+WYG +RP++LGP     PSYLTGE PGDYG+D AGLS DP  F +    E++H+RWAMLGALG + PE+L   G   F E VW++ G        LDYLG
Sbjct:   44 QSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILSKNGV-KFGEAVWFKAGAQIFSEGGLDYLG 145          
BLAST of FC868512 vs. ExPASy Swiss-Prot
Match: CB21_GOSHI (Chlorophyll a-b binding protein 151, chloroplastic OS=Gossypium hirsutum GN=CAB-151 PE=2 SV=2)

HSP 1 Score: 116.701 bits (291), Expect = 1.290e-25
Identity = 55/102 (53.92%), Postives = 66/102 (64.71%), Query Frame = 2
Query:  374 SLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHFVEPVWWRVGYSKLQGETLDYLG 679
            S+WYG +RP++LGP     PSYLTGE PGDYG+D AGLS DP  F K    E++H RWAMLGALG + PE+L   G   F E VW++ G        LDYLG
Sbjct:   47 SIWYGPDRPKYLGPFSDQIPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPEILSKNGV-KFGEAVWFKAGSQIFSEGGLDYLG 147          
BLAST of FC868512 vs. ExPASy Swiss-Prot
Match: CB2_PHYPA (Chlorophyll a-b binding protein, chloroplastic OS=Physcomitrella patens PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.200e-25
Identity = 54/112 (48.21%), Postives = 73/112 (65.18%), Query Frame = 2
Query:  344 KALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHFVEPVWWRVGYSKLQGETLDYLG 679
            + +++ A ++++WYG +RP++LGP   + PSYL GE  GDYG+D AGLS DP  F +    E++HARWAMLGALG L PE+L   G   F E VW++ G        LDYLG
Sbjct:   40 RTVSKSAGSDTIWYGADRPKFLGPFSGETPSYLNGEFAGDYGWDTAGLSSDPETFARNRELEVIHARWAMLGALGCLTPELLAKSGV-KFGEAVWFKAGAQIFSEGGLDYLG 150          
BLAST of FC868512 vs. ExPASy Swiss-Prot
Match: CB23_HORVU (Chlorophyll a-b binding protein of LHCII type III, chloroplastic OS=Hordeum vulgare GN=LHBC PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.873e-25
Identity = 55/108 (50.93%), Postives = 65/108 (60.19%), Query Frame = 2
Query:  356 RQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHFVEPVWWRVGYSKLQGETLDYLG 679
            R      LWYG +R ++LGP     PSYL GE PGDYG+D AGLS DP AF +    E++H RWAMLGALG + PEVL       F EPVW++ G        LDYLG
Sbjct:   42 RITMGNDLWYGPDRVKYLGPFSAQTPSYLNGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCVFPEVLQKWVGVEFKEPVWFKAGSQIFSEGGLDYLG 149          
BLAST of FC868512 vs. ExPASy Swiss-Prot
Match: CB23_SOYBN (Chlorophyll a-b binding protein 3, chloroplastic OS=Glycine max GN=CAB3 PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.752e-25
Identity = 56/112 (50.00%), Postives = 71/112 (63.39%), Query Frame = 2
Query:  344 KALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHFVEPVWWRVGYSKLQGETLDYLG 679
            K + +Q  + S WYG +R ++LGP   + PSYLTGE PGDYG+D AGLS DP  F K    E++H+RWAMLGALG + PE+L   G   F E VW++ G        LDYLG
Sbjct:   35 KTVTKQVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGV-KFGEAVWFKAGSQIFSEGGLDYLG 145          
BLAST of FC868512 vs. ExPASy Swiss-Prot
Match: CB21_CUCSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic (Fragment) OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.900e-25
Identity = 58/122 (47.54%), Postives = 76/122 (62.30%), Query Frame = 2
Query:  323 LQDSSKF---KALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHFVEPVWWRVGYSKLQGETLDYLG 679
            +Q ++KF   K  ++   + S WYG +R ++LGP   + PSYLTGE PGDYG+D AGLS DP  F K    E++H+RWAMLGALG + PE+L   G   F E VW++ G        LDYLG
Sbjct:   17 IQGNAKFTMRKTASKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGV-KFGEAVWFKAGSQIFSEGGLDYLG 137          
BLAST of FC868512 vs. ExPASy Swiss-Prot
Match: CB2G_SOLLC (Chlorophyll a-b binding protein 3C, chloroplastic OS=Solanum lycopersicum GN=CAB3C PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 6.400e-25
Identity = 65/145 (44.83%), Postives = 83/145 (57.24%), Query Frame = 2
Query:  248 AVKAIANSPLG-ELLQNRMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHFVEPVWWRVGYSKLQGETLDYLG 679
            A KA+  SP   E+  N  +  +K A +        A+ A + S WYG +R ++LGP   + PSYLTGE PGDYG+D AGLS DP  F K    E++H RWAMLGALG + PE+L   G   F E VW++ G        LDYLG
Sbjct:   14 AGKAVKLSPSSSEITGNGRVTMRKTATK--------AKPASSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGSQIFSEGGLDYLG 149          
BLAST of FC868512 vs. ExPASy Swiss-Prot
Match: CB23_POLMU (Chlorophyll a-b binding protein type 1 member F3, chloroplastic OS=Polystichum munitum GN=CABF3 PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 6.400e-25
Identity = 63/146 (43.15%), Postives = 85/146 (58.22%), Query Frame = 2
Query:  245 TAVKAIANSPLGELLQN-RMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHFVEPVWWRVGYSKLQGETLDYLG 679
            T+  A+ ++  G+ L+    L  K  A +   +  A   +A + S+WYG +RP +LGP     PSYL+GE PGDYG+D AGLS DP  F K    E++H+RWAMLGALG + PE+L   G   F E VW++ G        LDYLG
Sbjct:    3 TSTAALTSTFSGQQLKPVNELSRKVGAGEARVQMMAPKSKAPSGSIWYGSDRPLYLGPFSGSPPSYLSGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVTPELLAKNGV-KFGEAVWFKAGSQIFAEGGLDYLG 147          
The following BLAST results are available for this feature:
BLAST of FC868512 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
CB215_PEA9.874e-2653.40Chlorophyll a-b binding protein 215, chloroplastic... [more]
CB23_ORYSJ1.290e-2552.43Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB23_ORYSI1.290e-2552.43Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB21_GOSHI1.290e-2553.92Chlorophyll a-b binding protein 151, chloroplastic... [more]
CB2_PHYPA2.200e-2548.21Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB23_HORVU2.873e-2550.93Chlorophyll a-b binding protein of LHCII type III,... [more]
CB23_SOYBN3.752e-2550.00Chlorophyll a-b binding protein 3, chloroplastic O... [more]
CB21_CUCSA4.900e-2547.54Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB2G_SOLLC6.400e-2544.83Chlorophyll a-b binding protein 3C, chloroplastic ... [more]
CB23_POLMU6.400e-2543.15Chlorophyll a-b binding protein type 1 member F3, ... [more]

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Properties
Property NameValue
Genbank descriptionC31001C09EF AbioticL1 Citrus clementina cDNA clone C31001C09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868512 ID=FC868512; Name=FC868512; organism=Citrus clementina; type=EST; length=727bp
GAATTTAGATAAGTGAAAAAAGAAACTTGCTGCCATGGCTCTAATTCAAT
TTCAGGCGCATGCAACGGAGGATTGGCTTTCATGGAGTTGTTGTTCGAGC
TCGAGTGGAGGATGCTCGCTCAGGAAGATGTTAGCCCTGAAACCTTCACG
AAAGAATCTTCTCCTTAAACCCAAGTCTTCTTTAGTCTGCAAAGCATCGT
GGCAAGAGCTTGCGGGAGTGTTAGTATTCTCGGCAATACCCTTCACGGCT
GTGAAAGCCATCGCAAATAGCCCTCTCGGAGAATTGCTCCAAAACAGAAT
GTTGGAGACCAAGAAAGCTGCTCTCCAAGACTCTTCCAAGTTCAAAGCCT
TGGCTCGTCAAGCACGAAATGAAAGCTTGTGGTATGGAGAAGAGAGGCCT
CGATGGCTTGGTCCCATTCCGTATGACTATCCTTCATATCTTACCGGAGA
GCTACCTGGGGATTATGGCTTTGATGTTGCTGGTCTGAGCAAGGATCCTA
TGGCTTTCCAGAAATACTTCAACTTTGAAATACTTCATGCTCGTTGGGCC
ATGCTTGGAGCCCTTGGTGCTCTAGTTCCAGAAGTTTTAGATATGGTAGG
AGCCTTCCACTTTGTTGAGCCTGTCTGGTGGCGTGTTGGATACTCAAAGC
TCCAGGGAGAGACCCTGGACTACCTTGGTATCCAGGTCTCCATTTAGCTG
GAAGCCAGGGAGTATGTCATTGCTATT
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