FC868512

Overview
NameFC868512
Unique NameFC868512
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length727
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9343 contig Ccv1_Contig9343:1..728. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC868512 vs. ExPASy Swiss-Prot
Match: CB22_TOBAC (Chlorophyll a-b binding protein 21, chloroplastic OS=Nicotiana tabacum GN=CAB21 PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 6.400e-25
Identity = 56/112 (50.00%), Postives = 70/112 (62.50%), Query Frame = 2
Query:  344 KALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHFVEPVWWRVGYSKLQGETLDYLG 679
            K +A+   + S WYG +R ++LGP   + PSYLTGE PGDYG+D AGLS DP  F K    E++H RWAMLGALG + PE+L   G   F E VW++ G        LDYLG
Sbjct:   37 KTVAKPVASSSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGSQIFSEGGLDYLG 147          
BLAST of FC868512 vs. ExPASy Swiss-Prot
Match: CB2_DUNTE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella tertiolecta PE=2 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.092e-24
Identity = 62/132 (46.97%), Postives = 77/132 (58.33%), Query Frame = 2
Query:  317 AALQDSSKFKAL-ARQARNESL---------WYGEERPRWLGPIPY-DYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHFVEPVWWRVGYSKLQGETLDYLG 679
            AAL   S  KAL  RQ R + +         +YG +R ++LGP    D P YLTGE PGDYG+D AGLS DP  F +Y   E++HARWA+LGALG L PE+L       F EPVW++ G        L+YLG
Sbjct:    2 AALIARSGLKALNIRQTRQQRMATVPRAAVEFYGPDRAKFLGPFSENDTPEYLTGEFPGDYGWDTAGLSADPQTFARYREIELIHARWALLGALGILTPELLSQYAGVQFGEPVWFKAGAQIFADGGLNYLG 133          
BLAST of FC868512 vs. ExPASy Swiss-Prot
Match: CB24_TOBAC (Chlorophyll a-b binding protein 40, chloroplastic OS=Nicotiana tabacum GN=CAB40 PE=2 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.092e-24
Identity = 65/148 (43.92%), Postives = 83/148 (56.08%), Query Frame = 2
Query:  239 PFTAVKAIANSPLG-ELLQNRMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHFVEPVWWRVGYSKLQGETLDYLG 679
            P  A KA+  SP   E+  N  +  +K A +        A+   + S WYG +R ++LGP   + PSYLTGE PGDYG+D AGLS DP  F K    E++H RWAMLGALG + PE+L   G   F E VW++ G        LDYLG
Sbjct:   11 PSFAGKAVKLSPSSSEITGNGKVTMRKTASK--------AKTVSSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGSQIFSEGGLDYLG 149          
BLAST of FC868512 vs. ExPASy Swiss-Prot
Match: CB22_PEA (Chlorophyll a-b binding protein AB80, chloroplastic OS=Pisum sativum GN=AB80 PE=1 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.862e-24
Identity = 65/150 (43.33%), Postives = 82/150 (54.67%), Query Frame = 2
Query:  263 ANSPLGELLQNRMLETKKAALQDSSKFKALAR-----------QARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHFVEPVWWRVGYSKLQGETLDYLG 679
            A+S     L +  L  K+  L  SS+    AR            A + S WYG +R ++LGP   + PSYLTGE PGDYG+D AGLS DP  F K    E++H+RWAMLGALG + PE+L   G   F E VW++ G        LDYLG
Sbjct:    3 ASSSSSMALSSPTLAGKQLKLNPSSQELGAARFTMRKSATTKKVASSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGCVFPELLSRNGV-KFGEAVWFKAGSQIFSEGGLDYLG 151          
BLAST of FC868512 vs. ExPASy Swiss-Prot
Match: CB28_PEA (Chlorophyll a-b binding protein 8, chloroplastic OS=Pisum sativum GN=CAB8 PE=1 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.432e-24
Identity = 55/106 (51.89%), Postives = 68/106 (64.15%), Query Frame = 2
Query:  362 ARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHFVEPVWWRVGYSKLQGETLDYLG 679
            A + S WYG +R ++LGP   + PSYLTGE PGDYG+D AGLS DP  F K    E++H+RWAMLGALG + PE+L   G   F E VW++ G        LDYLG
Sbjct:   46 ASSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGCVFPELLSRNGV-KFGEAVWFKAGSQIFSEGGLDYLG 150          
BLAST of FC868512 vs. ExPASy Swiss-Prot
Match: CB21_TOBAC (Chlorophyll a-b binding protein 16, chloroplastic OS=Nicotiana tabacum GN=CAB16 PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.432e-24
Identity = 66/148 (44.59%), Postives = 84/148 (56.76%), Query Frame = 2
Query:  239 PFTAVKAIANSPLG-ELLQNRMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHFVEPVWWRVGYSKLQGETLDYLG 679
            PF A KA+  SP   E+  N  +  +K A +        A+   + S WYG +R ++LGP   + PSYLTGE PGDYG+D AGLS DP  F K    E++H RWAMLGALG + PE+L   G   F E VW++ G        LDYLG
Sbjct:   11 PF-AGKAVKLSPSSSEVTGNGKVTMRKTASK--------AKPVSSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGSQIFSEGGLDYLG 148          
BLAST of FC868512 vs. ExPASy Swiss-Prot
Match: CB25_NICPL (Chlorophyll a-b binding protein E, chloroplastic OS=Nicotiana plumbaginifolia GN=CABE PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 3.176e-24
Identity = 66/148 (44.59%), Postives = 84/148 (56.76%), Query Frame = 2
Query:  239 PFTAVKAIANSPLG-ELLQNRMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHFVEPVWWRVGYSKLQGETLDYLG 679
            PF A KA+  SP   E+  N  +  +K A +        A+   + S WYG +R ++LGP   + PSYLTGE PGDYG+D AGLS DP  F K    E++H RWAMLGALG + PE+L   G   F E VW++ G        LDYLG
Sbjct:   11 PF-AGKAVKLSPSSSEVTGNGKVTMRKTANK--------AKPVSSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGSQIFSEGGLDYLG 148          
BLAST of FC868512 vs. ExPASy Swiss-Prot
Match: CB23_NICPL (Chlorophyll a-b binding protein C, chloroplastic OS=Nicotiana plumbaginifolia GN=CABC PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 3.176e-24
Identity = 67/157 (42.68%), Postives = 86/157 (54.78%), Query Frame = 2
Query:  212 AGVLVFSAIPFTAVKAIANSPLG-ELLQNRMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHFVEPVWWRVGYSKLQGETLDYLG 679
            A  +  S+  F A KA+  SP   E+  N  +  +K A +        A+   + S WYG  R ++LGP   + PSYLTGE PGDYG+D AGLS DP  F K    E++H RWAMLGALG + PE+L   G   F E VW++ G        LDYLG
Sbjct:    3 ASTMALSSSSF-AGKAVKLSPSSSEITGNGKVTMRKTASK--------AKPVSSSSPWYGPNRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV-KFGEAVWFKGGSQIFSQGGLDYLG 149          
BLAST of FC868512 vs. ExPASy Swiss-Prot
Match: CB23_APIGR (Chlorophyll a-b binding protein, chloroplastic OS=Apium graveolens GN=LHC0 PE=1 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 3.176e-24
Identity = 67/151 (44.37%), Postives = 83/151 (54.97%), Query Frame = 2
Query:  239 PFTAVKAIANSPLG-ELLQN---RMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHFVEPVWWRVGYSKLQGETLDYLG 679
            P  A KA+  +P   EL  N    M +T KA + DS               WYG +R ++LGP   + PSYLTGE PGDYG+D AGLS DP  F K    E++H+RWAMLGALG + PE+L   G   F E VW++ G        LDYLG
Sbjct:   11 PALAGKAVKVAPSSSELFGNGRVSMRKTVKAPVSDSP--------------WYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGSQIFSEGGLDYLG 146          
BLAST of FC868512 vs. ExPASy Swiss-Prot
Match: CB25_TOBAC (Chlorophyll a-b binding protein 50, chloroplastic OS=Nicotiana tabacum GN=CAB50 PE=2 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 4.148e-24
Identity = 66/157 (42.04%), Postives = 86/157 (54.78%), Query Frame = 2
Query:  212 AGVLVFSAIPFTAVKAIANSPLG-ELLQNRMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHFVEPVWWRVGYSKLQGETLDYLG 679
            A  +  S+  F A KA+  SP   E+  N  +  +K   +        A+   + S WYG +R ++LGP   + PSYLTGE PGDYG+D AGLS DP  F K    E++H RWAMLGALG + PE+L   G   F E VW++ G        LDYLG
Sbjct:    3 AATMALSSSSF-AGKAVKLSPSSSEITGNGKVTMRKTVTK--------AKPLSSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGSQIFSEGGLDYLG 149          
The following BLAST results are available for this feature:
BLAST of FC868512 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
CB22_TOBAC6.400e-2550.00Chlorophyll a-b binding protein 21, chloroplastic ... [more]
CB2_DUNTE1.092e-2446.97Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB24_TOBAC1.092e-2443.92Chlorophyll a-b binding protein 40, chloroplastic ... [more]
CB22_PEA1.862e-2443.33Chlorophyll a-b binding protein AB80, chloroplasti... [more]
CB28_PEA2.432e-2451.89Chlorophyll a-b binding protein 8, chloroplastic O... [more]
CB21_TOBAC2.432e-2444.59Chlorophyll a-b binding protein 16, chloroplastic ... [more]
CB25_NICPL3.176e-2444.59Chlorophyll a-b binding protein E, chloroplastic O... [more]
CB23_NICPL3.176e-2442.68Chlorophyll a-b binding protein C, chloroplastic O... [more]
CB23_APIGR3.176e-2444.37Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB25_TOBAC4.148e-2442.04Chlorophyll a-b binding protein 50, chloroplastic ... [more]

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Properties
Property NameValue
Genbank descriptionC31001C09EF AbioticL1 Citrus clementina cDNA clone C31001C09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868512 ID=FC868512; Name=FC868512; organism=Citrus clementina; type=EST; length=727bp
GAATTTAGATAAGTGAAAAAAGAAACTTGCTGCCATGGCTCTAATTCAAT
TTCAGGCGCATGCAACGGAGGATTGGCTTTCATGGAGTTGTTGTTCGAGC
TCGAGTGGAGGATGCTCGCTCAGGAAGATGTTAGCCCTGAAACCTTCACG
AAAGAATCTTCTCCTTAAACCCAAGTCTTCTTTAGTCTGCAAAGCATCGT
GGCAAGAGCTTGCGGGAGTGTTAGTATTCTCGGCAATACCCTTCACGGCT
GTGAAAGCCATCGCAAATAGCCCTCTCGGAGAATTGCTCCAAAACAGAAT
GTTGGAGACCAAGAAAGCTGCTCTCCAAGACTCTTCCAAGTTCAAAGCCT
TGGCTCGTCAAGCACGAAATGAAAGCTTGTGGTATGGAGAAGAGAGGCCT
CGATGGCTTGGTCCCATTCCGTATGACTATCCTTCATATCTTACCGGAGA
GCTACCTGGGGATTATGGCTTTGATGTTGCTGGTCTGAGCAAGGATCCTA
TGGCTTTCCAGAAATACTTCAACTTTGAAATACTTCATGCTCGTTGGGCC
ATGCTTGGAGCCCTTGGTGCTCTAGTTCCAGAAGTTTTAGATATGGTAGG
AGCCTTCCACTTTGTTGAGCCTGTCTGGTGGCGTGTTGGATACTCAAAGC
TCCAGGGAGAGACCCTGGACTACCTTGGTATCCAGGTCTCCATTTAGCTG
GAAGCCAGGGAGTATGTCATTGCTATT
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