FC868512

Overview
NameFC868512
Unique NameFC868512
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length727
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9343 contig Ccv1_Contig9343:1..728. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC868512 vs. ExPASy Swiss-Prot
Match: CB21_ORYSJ (Chlorophyll a-b binding protein 1, chloroplastic OS=Oryza sativa subsp. japonica GN=CAB1R PE=2 SV=2)

HSP 1 Score: 110.153 bits (274), Expect = 1.207e-23
Identity = 55/106 (51.89%), Postives = 68/106 (64.15%), Query Frame = 2
Query:  362 ARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHFVEPVWWRVGYSKLQGETLDYLG 679
            A + S WYG +R  +LGP+  + PSYLTGE PGDYG+D AGLS DP  F K    E++H+RWAMLGALG + PE+L   G   F E VW++ G        LDYLG
Sbjct:   43 ASSGSPWYGADRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGSQIFSEGGLDYLG 147          
BLAST of FC868512 vs. ExPASy Swiss-Prot
Match: CB21_ARATH (Chlorophyll a-b binding protein 165/180, chloroplastic OS=Arabidopsis thaliana GN=LHCP-A PE=1 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.207e-23
Identity = 53/102 (51.96%), Postives = 66/102 (64.71%), Query Frame = 2
Query:  374 SLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHFVEPVWWRVGYSKLQGETLDYLG 679
            S WYG +R ++LGP   + PSYLTGE PGDYG+D AGLS DP  F +    E++H+RWAMLGALG + PE+L   G   F E VW++ G        LDYLG
Sbjct:   48 SPWYGSDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGSQIFSDGGLDYLG 148          
BLAST of FC868512 vs. ExPASy Swiss-Prot
Match: CB2A_PYRPY (Chlorophyll a-b binding protein 1A, chloroplastic OS=Pyrus pyrifolia PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.576e-23
Identity = 54/103 (52.43%), Postives = 66/103 (64.08%), Query Frame = 2
Query:  371 ESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHFVEPVWWRVGYSKLQGETLDYLG 679
            +S WYG +R  +LGP   + PSYLTGE PGDYG+D AGLS DP  F K    E++H+RWAMLGALG + PE+L   G   F E VW++ G        LDYLG
Sbjct:   59 DSPWYGPDRVMYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGAQIFSEGGLDYLG 160          
BLAST of FC868512 vs. ExPASy Swiss-Prot
Match: CB24_PETSP (Chlorophyll a-b binding protein 25, chloroplastic OS=Petunia sp. GN=CAB25 PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.576e-23
Identity = 54/109 (49.54%), Postives = 67/109 (61.47%), Query Frame = 2
Query:  353 ARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHFVEPVWWRVGYSKLQGETLDYLG 679
            A+   + S WYG +R ++LGP   + PSYLTGE PGDYG+D AGLS DP  F K    E++H RWAMLGALG + PE+    G   F E VW++ G        LDYLG
Sbjct:   41 AKPVSSGSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELFARNGV-KFGEAVWFKAGSQIFSEGGLDYLG 148          
BLAST of FC868512 vs. ExPASy Swiss-Prot
Match: CB22_MAIZE (Chlorophyll a-b binding protein, chloroplastic OS=Zea mays PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.576e-23
Identity = 55/106 (51.89%), Postives = 67/106 (63.21%), Query Frame = 2
Query:  362 ARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHFVEPVWWRVGYSKLQGETLDYLG 679
            A + S WYG +R  +LGP+  + PSYLTGE PGDYG+D AGLS DP  F K    E++H RWAMLGALG + PE+L   G   F E VW++ G        LDYLG
Sbjct:   43 AASGSPWYGPDRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGSQIFSEGGLDYLG 147          
BLAST of FC868512 vs. ExPASy Swiss-Prot
Match: CB2A_PINSY (Chlorophyll a-b binding protein type 2 member 1A, chloroplastic OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.059e-23
Identity = 54/103 (52.43%), Postives = 66/103 (64.08%), Query Frame = 2
Query:  371 ESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHFVEPVWWRVGYSKLQGETLDYLG 679
            +S WYG +R  +LGP   + PSYLTGE PGDYG+D AGLS DP  F K    E++H+RWAMLGALG + PE+L   G   F E VW++ G        LDYLG
Sbjct:   59 DSPWYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGAQIFSEGGLDYLG 160          
BLAST of FC868512 vs. ExPASy Swiss-Prot
Match: CB25_PETSP (Chlorophyll a-b binding protein 91R, chloroplastic OS=Petunia sp. GN=CAB91R PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.689e-23
Identity = 64/158 (40.51%), Postives = 84/158 (53.16%), Query Frame = 2
Query:  209 LAGVLVFSAIPFTAVKAIANSPLG-ELLQNRMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHFVEPVWWRVGYSKLQGETLDYLG 679
            +A   +  + P  A KA+  SP   E+  N     +K   +        A+   + S WYG +R ++LGP   + PSYLTGE PGDYG+D A LS DP  F K    E++H RWAMLGALG + PE+L   G   F E VW++ G        LDYLG
Sbjct:    1 MAAATMALSSPSFAGKAVKFSPSSSEITGNGKATMRKTVTK--------AKPVSSGSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAELSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGSQIFSEGGLDYLG 149          
BLAST of FC868512 vs. ExPASy Swiss-Prot
Match: CB21_SINAL (Chlorophyll a-b binding protein 1, chloroplastic OS=Sinapis alba GN=CAB1 PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.689e-23
Identity = 53/102 (51.96%), Postives = 65/102 (63.73%), Query Frame = 2
Query:  374 SLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHFVEPVWWRVGYSKLQGETLDYLG 679
            S WYG +R ++LGP   + PSYLTGE PGDYG+D AGLS DP  F +    E++H RWAMLGALG + PE+L   G   F E VW++ G        LDYLG
Sbjct:   47 SPWYGSDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGSQIFSEGGLDYLG 147          
BLAST of FC868512 vs. ExPASy Swiss-Prot
Match: CB22_PETSP (Chlorophyll a-b binding protein 22L, chloroplastic OS=Petunia sp. GN=CAB22L PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.512e-23
Identity = 54/109 (49.54%), Postives = 66/109 (60.55%), Query Frame = 2
Query:  353 ARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHFVEPVWWRVGYSKLQGETLDYLG 679
            A+   + S WYG +R ++LGP   + PSYLTGE PGDYG+D AGLS DP  F K    E++H RWAMLGALG + PE+    G   F E VW + G        LDYLG
Sbjct:   42 AKPVSSGSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELFARNGV-KFGEAVWLKAGSQIFSEGGLDYLG 149          
BLAST of FC868512 vs. ExPASy Swiss-Prot
Match: CB21_PEA (Chlorophyll a-b binding protein AB96 (Fragment) OS=Pisum sativum GN=AB96 PE=1 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 4.586e-23
Identity = 53/106 (50.00%), Postives = 67/106 (63.21%), Query Frame = 2
Query:  362 ARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHFVEPVWWRVGYSKLQGETLDYLG 679
            A + S W+G +  ++LGP   + PSYLTGE PGDYG+D AGLS DP  F K    E++H+RWAMLGALG + PE+L   G   F E VW++ G        LDYLG
Sbjct:    6 ASSSSPWHGPDGVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGV-KFGEAVWFKAGSQIFSEGGLDYLG 110          
The following BLAST results are available for this feature:
BLAST of FC868512 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
CB21_ORYSJ1.207e-2351.89Chlorophyll a-b binding protein 1, chloroplastic O... [more]
CB21_ARATH1.207e-2351.96Chlorophyll a-b binding protein 165/180, chloropla... [more]
CB2A_PYRPY1.576e-2352.43Chlorophyll a-b binding protein 1A, chloroplastic ... [more]
CB24_PETSP1.576e-2349.54Chlorophyll a-b binding protein 25, chloroplastic ... [more]
CB22_MAIZE1.576e-2351.89Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB2A_PINSY2.059e-2352.43Chlorophyll a-b binding protein type 2 member 1A, ... [more]
CB25_PETSP2.689e-2340.51Chlorophyll a-b binding protein 91R, chloroplastic... [more]
CB21_SINAL2.689e-2351.96Chlorophyll a-b binding protein 1, chloroplastic O... [more]
CB22_PETSP3.512e-2349.54Chlorophyll a-b binding protein 22L, chloroplastic... [more]
CB21_PEA4.586e-2350.00Chlorophyll a-b binding protein AB96 (Fragment) OS... [more]

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Properties
Property NameValue
Genbank descriptionC31001C09EF AbioticL1 Citrus clementina cDNA clone C31001C09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868512 ID=FC868512; Name=FC868512; organism=Citrus clementina; type=EST; length=727bp
GAATTTAGATAAGTGAAAAAAGAAACTTGCTGCCATGGCTCTAATTCAAT
TTCAGGCGCATGCAACGGAGGATTGGCTTTCATGGAGTTGTTGTTCGAGC
TCGAGTGGAGGATGCTCGCTCAGGAAGATGTTAGCCCTGAAACCTTCACG
AAAGAATCTTCTCCTTAAACCCAAGTCTTCTTTAGTCTGCAAAGCATCGT
GGCAAGAGCTTGCGGGAGTGTTAGTATTCTCGGCAATACCCTTCACGGCT
GTGAAAGCCATCGCAAATAGCCCTCTCGGAGAATTGCTCCAAAACAGAAT
GTTGGAGACCAAGAAAGCTGCTCTCCAAGACTCTTCCAAGTTCAAAGCCT
TGGCTCGTCAAGCACGAAATGAAAGCTTGTGGTATGGAGAAGAGAGGCCT
CGATGGCTTGGTCCCATTCCGTATGACTATCCTTCATATCTTACCGGAGA
GCTACCTGGGGATTATGGCTTTGATGTTGCTGGTCTGAGCAAGGATCCTA
TGGCTTTCCAGAAATACTTCAACTTTGAAATACTTCATGCTCGTTGGGCC
ATGCTTGGAGCCCTTGGTGCTCTAGTTCCAGAAGTTTTAGATATGGTAGG
AGCCTTCCACTTTGTTGAGCCTGTCTGGTGGCGTGTTGGATACTCAAAGC
TCCAGGGAGAGACCCTGGACTACCTTGGTATCCAGGTCTCCATTTAGCTG
GAAGCCAGGGAGTATGTCATTGCTATT
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