FC868512
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC868512 vs. ExPASy Swiss-Prot
Match: CB2B_PINSY (Chlorophyll a-b binding protein type 2 member 1B, chloroplastic OS=Pinus sylvestris PE=2 SV=1) HSP 1 Score: 107.457 bits (267), Expect = 7.823e-23 Identity = 54/102 (52.94%), Postives = 64/102 (62.75%), Query Frame = 2 Query: 374 SLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHFVEPVWWRVGYSKLQGETLDYLG 679 S WYG +R +LGP + PSYLTGE PGDYG+D AGLS DP F K E++H RWAMLGALG + PE+L G F E VW++ G LDYLG Sbjct: 56 SPWYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPENFAKNRELEVIHCRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGAQIFSEGGLDYLG 156
BLAST of FC868512 vs. ExPASy Swiss-Prot
Match: CB22_HORVU (Chlorophyll a-b binding protein 2, chloroplastic OS=Hordeum vulgare GN=CAB2 PE=3 SV=1) HSP 1 Score: 107.071 bits (266), Expect = 1.022e-22 Identity = 53/102 (51.96%), Postives = 64/102 (62.75%), Query Frame = 2 Query: 374 SLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHFVEPVWWRVGYSKLQGETLDYLG 679 S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F K E++H RWAMLGALG + PE+L G F E VW++ G L YLG Sbjct: 46 SPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHGRWAMLGALGCVFPELLARNGV-KFGEAVWFKKGSQIFSEGGLQYLG 146
BLAST of FC868512 vs. ExPASy Swiss-Prot
Match: CB2_CHLRE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas reinhardtii GN=cabII-1 PE=3 SV=1) HSP 1 Score: 106.686 bits (265), Expect = 1.334e-22 Identity = 53/101 (52.48%), Postives = 65/101 (64.36%), Query Frame = 2 Query: 380 WYGEERPRWLGPIPYDY-PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHFVEPVWWRVGYSKLQGETLDYLG 679 +YG R +WLGP + P+YLTGE PGDYG+D AGLS DP F++Y E++HARWAMLGALG PE+L G F E VW++ G LDYLG Sbjct: 36 FYGPNRAKWLGPYSENATPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCQTPELLAKSGT-KFGEAVWFKAGAQIFSEGGLDYLG 135
BLAST of FC868512 vs. ExPASy Swiss-Prot
Match: CB26_ARATH (Chlorophyll a-b binding protein CP26, chloroplastic OS=Arabidopsis thaliana GN=LHCB5 PE=2 SV=1) HSP 1 Score: 102.064 bits (253), Expect = 3.287e-21 Identity = 54/123 (43.90%), Postives = 72/123 (58.54%), Query Frame = 2 Query: 335 SKFKALARQARNESLWYGEERPRWLGPIPYD---YPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHFVEPVWWRVGYSKLQGETLDYLGIQVSI 694 +K KA++ + + WYG +R +L D P YL GE+ GDYG+D GL K P F KY FE++HARWAMLGA G ++PE L+ GA E VW++ G L G TL+Y G + I Sbjct: 47 AKSKAVSETSDELAKWYGPDRRIFLPDGLLDRSEIPEYLNGEVAGDYGYDPFGLGKKPENFAKYQAFELIHARWAMLGAAGFIIPEALNKYGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI 169
BLAST of FC868512 vs. ExPASy Swiss-Prot
Match: CB48_MAIZE (Chlorophyll a-b binding protein 48, chloroplastic OS=Zea mays GN=CAB48 PE=3 SV=1) HSP 1 Score: 95.9005 bits (237), Expect = 2.356e-19 Identity = 48/101 (47.52%), Postives = 61/101 (60.40%), Query Frame = 2 Query: 338 KFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHFVEPVWWRVG 640 K A + AR+ S WYG +R +LGP+ PSYLTGE PGDYG+D GLS DP F K E++H RWA+ LG + PE+L G F E VW++ G Sbjct: 34 KTAAKPKPARSGSPWYGADRVLYLGPLSGSPPSYLTGEFPGDYGWDTEGLSADPETFAKNRELEVIHCRWAIAVGLGCVFPELLARNGV-KFGEGVWFKAG 133
BLAST of FC868512 vs. ExPASy Swiss-Prot
Match: CB2_MALDO (Chlorophyll a-b binding protein AB10, chloroplastic OS=Malus domestica PE=3 SV=1) HSP 1 Score: 92.4337 bits (228), Expect = 2.604e-18 Identity = 46/97 (47.42%), Postives = 61/97 (62.89%), Query Frame = 2 Query: 389 EERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHFVEPVWWRVGYSKLQGETLDYLG 679 + R ++LGP ++PSYLTGE PGDYG+D AGLS P F K E++H+R AM ALG + PE+L ++G F E VW++ G LDYLG Sbjct: 56 DRRVKYLGPFSGEWPSYLTGEFPGDYGWDTAGLSAYPETFAKNRELEVIHSRCAMSAALGCIFPELLSVMGQ-GFGEAVWFKAGAQIFSEGGLDYLG 151
BLAST of FC868512 vs. ExPASy Swiss-Prot
Match: CB22_CUCSA (Chlorophyll a-b binding protein of LHCII type 1 (Fragment) OS=Cucumis sativus PE=2 SV=1) HSP 1 Score: 92.0485 bits (227), Expect = 3.401e-18 Identity = 46/89 (51.69%), Postives = 55/89 (61.80%), Query Frame = 2 Query: 413 PIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHFVEPVWWRVGYSKLQGETLDYLG 679 P + PSYLTGE PGDYG+D AGLS DP F K E++H+ WAMLGALG + PE+L G F E VW++ G LDYLG Sbjct: 1 PFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSTWAMLGALGCVFPELLSRNGV-KFGEAVWFKAGSQIFSEGGLDYLG 88
BLAST of FC868512 vs. ExPASy Swiss-Prot
Match: CB22_SOYBN (Chlorophyll a-b binding protein 2, chloroplastic OS=Glycine max GN=CAB2 PE=3 SV=1) HSP 1 Score: 87.8113 bits (216), Expect = 6.415e-17 Identity = 53/141 (37.59%), Postives = 71/141 (50.35%), Query Frame = 2 Query: 257 AIANSPLGELLQNRMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHFVEPVWWRVGYSKLQGETLDYLG 679 A+++S L T + + S K + + S WYG +R ++LGP + PSYLTGE G LS DP F K E++H+RWAMLGALG + PE+L G F E VW++ G LDYLG Sbjct: 7 ALSSSSLAGQAMKLAPSTPELGVGRVSMRKTAPKTVSSGSPWYGPDRVKYLGPFSGEAPSYLTGEFHG--------LSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGSQIFSEGGLDYLG 138
BLAST of FC868512 vs. ExPASy Swiss-Prot
Match: CB2_DUNSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella salina PE=2 SV=1) HSP 1 Score: 83.1889 bits (204), Expect = 1.580e-15 Identity = 47/126 (37.30%), Postives = 72/126 (57.14%), Query Frame = 2 Query: 308 TKKAALQDSSKFKALARQARNESLWYGEERPR-WLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHFVE-PVWWRVGYSKLQGETLDYLG 679 TKK A KA+++ + + + +YG + W + + +P TGE PGDYG+D AGLS DP F++Y E++HAR +LGALG + PE+L F + +W++ G + Q L+YLG Sbjct: 40 TKKGA-------KAVSKSSSSANQFYGPDATSGW--DLQHQHPRLPTGEFPGDYGWDTAGLSADPETFKRYRELELIHARCGLLGALGMVTPELLADEDGIKFGDAAIWFKAGAAIFQDGGLNYLG 156
BLAST of FC868512 vs. ExPASy Swiss-Prot
Match: CB12_SOLLC (Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum lycopersicum GN=CAB7 PE=3 SV=1) HSP 1 Score: 75.0998 bits (183), Expect = 4.303e-13 Identity = 47/145 (32.41%), Postives = 69/145 (47.59%), Query Frame = 2 Query: 230 SAIPFTAVKAIANSPLGELLQNRMLETKKAALQDSSKFKA-------LARQARNESLWYGEERPRWL-GPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHFVEPVWWRVG 640 SA + + A+A S ++ T KA+ + + AR A + +RP W G P P +L G LPGD+GFD GL+ DP + + E++H RWAMLGA G +PE+L +G + P W+ G Sbjct: 3 SACASSTIAAVAFSSPSSRRNGSIVGTTKASFLGGRRLRVSKYSTTPTARSATTVCVAADPDRPLWFPGSTP---PPWLDGSLPGDFGFDPLGLASDPESLRWNQQAELVHCRWAMLGAAGIFIPELLTKIGILN--TPSWYTAG 142 The following BLAST results are available for this feature:
BLAST of FC868512 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 63
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Sequences
The
following sequences are available for this feature:
EST sequence >FC868512 ID=FC868512; Name=FC868512; organism=Citrus clementina; type=EST; length=727bpback to top |