FC868512

Overview
NameFC868512
Unique NameFC868512
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length727
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9343 contig Ccv1_Contig9343:1..728. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC868512 vs. ExPASy Swiss-Prot
Match: CB2B_PINSY (Chlorophyll a-b binding protein type 2 member 1B, chloroplastic OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 7.823e-23
Identity = 54/102 (52.94%), Postives = 64/102 (62.75%), Query Frame = 2
Query:  374 SLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHFVEPVWWRVGYSKLQGETLDYLG 679
            S WYG +R  +LGP   + PSYLTGE PGDYG+D AGLS DP  F K    E++H RWAMLGALG + PE+L   G   F E VW++ G        LDYLG
Sbjct:   56 SPWYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPENFAKNRELEVIHCRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGAQIFSEGGLDYLG 156          
BLAST of FC868512 vs. ExPASy Swiss-Prot
Match: CB22_HORVU (Chlorophyll a-b binding protein 2, chloroplastic OS=Hordeum vulgare GN=CAB2 PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.022e-22
Identity = 53/102 (51.96%), Postives = 64/102 (62.75%), Query Frame = 2
Query:  374 SLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHFVEPVWWRVGYSKLQGETLDYLG 679
            S WYG +R ++LGP   + PSYLTGE PGDYG+D AGLS DP  F K    E++H RWAMLGALG + PE+L   G   F E VW++ G        L YLG
Sbjct:   46 SPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHGRWAMLGALGCVFPELLARNGV-KFGEAVWFKKGSQIFSEGGLQYLG 146          
BLAST of FC868512 vs. ExPASy Swiss-Prot
Match: CB2_CHLRE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas reinhardtii GN=cabII-1 PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.334e-22
Identity = 53/101 (52.48%), Postives = 65/101 (64.36%), Query Frame = 2
Query:  380 WYGEERPRWLGPIPYDY-PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHFVEPVWWRVGYSKLQGETLDYLG 679
            +YG  R +WLGP   +  P+YLTGE PGDYG+D AGLS DP  F++Y   E++HARWAMLGALG   PE+L   G   F E VW++ G        LDYLG
Sbjct:   36 FYGPNRAKWLGPYSENATPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCQTPELLAKSGT-KFGEAVWFKAGAQIFSEGGLDYLG 135          
BLAST of FC868512 vs. ExPASy Swiss-Prot
Match: CB26_ARATH (Chlorophyll a-b binding protein CP26, chloroplastic OS=Arabidopsis thaliana GN=LHCB5 PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.287e-21
Identity = 54/123 (43.90%), Postives = 72/123 (58.54%), Query Frame = 2
Query:  335 SKFKALARQARNESLWYGEERPRWLGPIPYD---YPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHFVEPVWWRVGYSKLQGETLDYLGIQVSI 694
            +K KA++  +   + WYG +R  +L     D    P YL GE+ GDYG+D  GL K P  F KY  FE++HARWAMLGA G ++PE L+  GA    E VW++ G   L G TL+Y G  + I
Sbjct:   47 AKSKAVSETSDELAKWYGPDRRIFLPDGLLDRSEIPEYLNGEVAGDYGYDPFGLGKKPENFAKYQAFELIHARWAMLGAAGFIIPEALNKYGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI 169          
BLAST of FC868512 vs. ExPASy Swiss-Prot
Match: CB48_MAIZE (Chlorophyll a-b binding protein 48, chloroplastic OS=Zea mays GN=CAB48 PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.356e-19
Identity = 48/101 (47.52%), Postives = 61/101 (60.40%), Query Frame = 2
Query:  338 KFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHFVEPVWWRVG 640
            K  A  + AR+ S WYG +R  +LGP+    PSYLTGE PGDYG+D  GLS DP  F K    E++H RWA+   LG + PE+L   G   F E VW++ G
Sbjct:   34 KTAAKPKPARSGSPWYGADRVLYLGPLSGSPPSYLTGEFPGDYGWDTEGLSADPETFAKNRELEVIHCRWAIAVGLGCVFPELLARNGV-KFGEGVWFKAG 133          
BLAST of FC868512 vs. ExPASy Swiss-Prot
Match: CB2_MALDO (Chlorophyll a-b binding protein AB10, chloroplastic OS=Malus domestica PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.604e-18
Identity = 46/97 (47.42%), Postives = 61/97 (62.89%), Query Frame = 2
Query:  389 EERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHFVEPVWWRVGYSKLQGETLDYLG 679
            + R ++LGP   ++PSYLTGE PGDYG+D AGLS  P  F K    E++H+R AM  ALG + PE+L ++G   F E VW++ G        LDYLG
Sbjct:   56 DRRVKYLGPFSGEWPSYLTGEFPGDYGWDTAGLSAYPETFAKNRELEVIHSRCAMSAALGCIFPELLSVMGQ-GFGEAVWFKAGAQIFSEGGLDYLG 151          
BLAST of FC868512 vs. ExPASy Swiss-Prot
Match: CB22_CUCSA (Chlorophyll a-b binding protein of LHCII type 1 (Fragment) OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.401e-18
Identity = 46/89 (51.69%), Postives = 55/89 (61.80%), Query Frame = 2
Query:  413 PIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHFVEPVWWRVGYSKLQGETLDYLG 679
            P   + PSYLTGE PGDYG+D AGLS DP  F K    E++H+ WAMLGALG + PE+L   G   F E VW++ G        LDYLG
Sbjct:    1 PFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSTWAMLGALGCVFPELLSRNGV-KFGEAVWFKAGSQIFSEGGLDYLG 88          
BLAST of FC868512 vs. ExPASy Swiss-Prot
Match: CB22_SOYBN (Chlorophyll a-b binding protein 2, chloroplastic OS=Glycine max GN=CAB2 PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 6.415e-17
Identity = 53/141 (37.59%), Postives = 71/141 (50.35%), Query Frame = 2
Query:  257 AIANSPLGELLQNRMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHFVEPVWWRVGYSKLQGETLDYLG 679
            A+++S L          T +  +   S  K   +   + S WYG +R ++LGP   + PSYLTGE  G        LS DP  F K    E++H+RWAMLGALG + PE+L   G   F E VW++ G        LDYLG
Sbjct:    7 ALSSSSLAGQAMKLAPSTPELGVGRVSMRKTAPKTVSSGSPWYGPDRVKYLGPFSGEAPSYLTGEFHG--------LSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGSQIFSEGGLDYLG 138          
BLAST of FC868512 vs. ExPASy Swiss-Prot
Match: CB2_DUNSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella salina PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.580e-15
Identity = 47/126 (37.30%), Postives = 72/126 (57.14%), Query Frame = 2
Query:  308 TKKAALQDSSKFKALARQARNESLWYGEERPR-WLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHFVE-PVWWRVGYSKLQGETLDYLG 679
            TKK A       KA+++ + + + +YG +    W   + + +P   TGE PGDYG+D AGLS DP  F++Y   E++HAR  +LGALG + PE+L       F +  +W++ G +  Q   L+YLG
Sbjct:   40 TKKGA-------KAVSKSSSSANQFYGPDATSGW--DLQHQHPRLPTGEFPGDYGWDTAGLSADPETFKRYRELELIHARCGLLGALGMVTPELLADEDGIKFGDAAIWFKAGAAIFQDGGLNYLG 156          
BLAST of FC868512 vs. ExPASy Swiss-Prot
Match: CB12_SOLLC (Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum lycopersicum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.303e-13
Identity = 47/145 (32.41%), Postives = 69/145 (47.59%), Query Frame = 2
Query:  230 SAIPFTAVKAIANSPLGELLQNRMLETKKAALQDSSKFKA-------LARQARNESLWYGEERPRWL-GPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHFVEPVWWRVG 640
            SA   + + A+A S         ++ T KA+     + +         AR A    +    +RP W  G  P   P +L G LPGD+GFD  GL+ DP + +     E++H RWAMLGA G  +PE+L  +G  +   P W+  G
Sbjct:    3 SACASSTIAAVAFSSPSSRRNGSIVGTTKASFLGGRRLRVSKYSTTPTARSATTVCVAADPDRPLWFPGSTP---PPWLDGSLPGDFGFDPLGLASDPESLRWNQQAELVHCRWAMLGAAGIFIPELLTKIGILN--TPSWYTAG 142          
The following BLAST results are available for this feature:
BLAST of FC868512 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
CB2B_PINSY7.823e-2352.94Chlorophyll a-b binding protein type 2 member 1B, ... [more]
CB22_HORVU1.022e-2251.96Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB2_CHLRE1.334e-2252.48Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB26_ARATH3.287e-2143.90Chlorophyll a-b binding protein CP26, chloroplasti... [more]
CB48_MAIZE2.356e-1947.52Chlorophyll a-b binding protein 48, chloroplastic ... [more]
CB2_MALDO2.604e-1847.42Chlorophyll a-b binding protein AB10, chloroplasti... [more]
CB22_CUCSA3.401e-1851.69Chlorophyll a-b binding protein of LHCII type 1 (F... [more]
CB22_SOYBN6.415e-1737.59Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB2_DUNSA1.580e-1537.30Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB12_SOLLC4.303e-1332.41Chlorophyll a-b binding protein 7, chloroplastic O... [more]

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Properties
Property NameValue
Genbank descriptionC31001C09EF AbioticL1 Citrus clementina cDNA clone C31001C09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868512 ID=FC868512; Name=FC868512; organism=Citrus clementina; type=EST; length=727bp
GAATTTAGATAAGTGAAAAAAGAAACTTGCTGCCATGGCTCTAATTCAAT
TTCAGGCGCATGCAACGGAGGATTGGCTTTCATGGAGTTGTTGTTCGAGC
TCGAGTGGAGGATGCTCGCTCAGGAAGATGTTAGCCCTGAAACCTTCACG
AAAGAATCTTCTCCTTAAACCCAAGTCTTCTTTAGTCTGCAAAGCATCGT
GGCAAGAGCTTGCGGGAGTGTTAGTATTCTCGGCAATACCCTTCACGGCT
GTGAAAGCCATCGCAAATAGCCCTCTCGGAGAATTGCTCCAAAACAGAAT
GTTGGAGACCAAGAAAGCTGCTCTCCAAGACTCTTCCAAGTTCAAAGCCT
TGGCTCGTCAAGCACGAAATGAAAGCTTGTGGTATGGAGAAGAGAGGCCT
CGATGGCTTGGTCCCATTCCGTATGACTATCCTTCATATCTTACCGGAGA
GCTACCTGGGGATTATGGCTTTGATGTTGCTGGTCTGAGCAAGGATCCTA
TGGCTTTCCAGAAATACTTCAACTTTGAAATACTTCATGCTCGTTGGGCC
ATGCTTGGAGCCCTTGGTGCTCTAGTTCCAGAAGTTTTAGATATGGTAGG
AGCCTTCCACTTTGTTGAGCCTGTCTGGTGGCGTGTTGGATACTCAAAGC
TCCAGGGAGAGACCCTGGACTACCTTGGTATCCAGGTCTCCATTTAGCTG
GAAGCCAGGGAGTATGTCATTGCTATT
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