FC868512

Overview
NameFC868512
Unique NameFC868512
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length727
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9343 contig Ccv1_Contig9343:1..728. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC868512 vs. ExPASy Swiss-Prot
Match: CB12_PETHY (Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.135e-12
Identity = 38/100 (38.00%), Postives = 54/100 (54.00%), Query Frame = 2
Query:  392 ERPRWL-GPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHFVEPVWWRVGYSKLQGETLDYLGIQV 688
            +RP W  G  P   P +L G LPGD+GFD  GL  DP + +     E++H+RWAMLGA G  +PE L  +G  +   P W+  G  +   +T     I++
Sbjct:   64 DRPLWFPGSTP---PEWLDGSLPGDFGFDPLGLGSDPESLKWNAQAELVHSRWAMLGAAGIFIPEFLTKIGVLN--TPSWYTAGEQEYFTDTTTLFVIEL 158          
BLAST of FC868512 vs. ExPASy Swiss-Prot
Match: CB24_ARATH (Chlorophyll a-b binding protein 4, chloroplastic OS=Arabidopsis thaliana GN=CAB4 PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.213e-12
Identity = 39/115 (33.91%), Postives = 56/115 (48.70%), Query Frame = 2
Query:  296 RMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHFVEPVWWRVG 640
            R L      L     F ++   A+  S     ++  WL  +    P YLTG L GD GFD  GL++DP   + +   E+++ RWAMLG  G L+PEV   +G  +   P W+  G
Sbjct:   21 RFLTGSSGRLNRDLSFTSIGSSAKTSSFKVEAKKGEWLPGLAS--PDYLTGSLAGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTKIGIINV--PEWYDAG 131          
BLAST of FC868512 vs. ExPASy Swiss-Prot
Match: CB24_PEA (Chlorophyll a-b binding protein P4, chloroplastic OS=Pisum sativum GN=lhcA-P4 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.808e-11
Identity = 32/70 (45.71%), Postives = 43/70 (61.43%), Query Frame = 2
Query:  431 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHFVEPVWWRVG 640
            P YLTG LPGD GFD  GL++DP   + +   E+++ RWAMLG  G L+PEV   +G  +   P W+  G
Sbjct:   63 PGYLTGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTSIGIINV--PKWYAAG 130          
The following BLAST results are available for this feature:
BLAST of FC868512 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
CB12_PETHY2.135e-1238.00Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB24_ARATH6.213e-1233.91Chlorophyll a-b binding protein 4, chloroplastic O... [more]
CB24_PEA1.808e-1145.71Chlorophyll a-b binding protein P4, chloroplastic ... [more]

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Properties
Property NameValue
Genbank descriptionC31001C09EF AbioticL1 Citrus clementina cDNA clone C31001C09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868512 ID=FC868512; Name=FC868512; organism=Citrus clementina; type=EST; length=727bp
GAATTTAGATAAGTGAAAAAAGAAACTTGCTGCCATGGCTCTAATTCAAT
TTCAGGCGCATGCAACGGAGGATTGGCTTTCATGGAGTTGTTGTTCGAGC
TCGAGTGGAGGATGCTCGCTCAGGAAGATGTTAGCCCTGAAACCTTCACG
AAAGAATCTTCTCCTTAAACCCAAGTCTTCTTTAGTCTGCAAAGCATCGT
GGCAAGAGCTTGCGGGAGTGTTAGTATTCTCGGCAATACCCTTCACGGCT
GTGAAAGCCATCGCAAATAGCCCTCTCGGAGAATTGCTCCAAAACAGAAT
GTTGGAGACCAAGAAAGCTGCTCTCCAAGACTCTTCCAAGTTCAAAGCCT
TGGCTCGTCAAGCACGAAATGAAAGCTTGTGGTATGGAGAAGAGAGGCCT
CGATGGCTTGGTCCCATTCCGTATGACTATCCTTCATATCTTACCGGAGA
GCTACCTGGGGATTATGGCTTTGATGTTGCTGGTCTGAGCAAGGATCCTA
TGGCTTTCCAGAAATACTTCAACTTTGAAATACTTCATGCTCGTTGGGCC
ATGCTTGGAGCCCTTGGTGCTCTAGTTCCAGAAGTTTTAGATATGGTAGG
AGCCTTCCACTTTGTTGAGCCTGTCTGGTGGCGTGTTGGATACTCAAAGC
TCCAGGGAGAGACCCTGGACTACCTTGGTATCCAGGTCTCCATTTAGCTG
GAAGCCAGGGAGTATGTCATTGCTATT
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