FC868535

Overview
NameFC868535
Unique NameFC868535
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length683
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868535 vs. ExPASy Swiss-Prot
Match: SYN_DESVH (Asparaginyl-tRNA synthetase OS=Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303) GN=asnS PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 6.549e-21
Identity = 62/139 (44.60%), Postives = 85/139 (61.15%), Query Frame = 3
Query:  273 VRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDV---ADLGQLVPTGTCVYVEGMLKNPPEGTKQKIELRVQKVVDVGMVDPAKYPIPKTKLTLEFLRDRIPFRPRTNTIAAVARIRNALAYATHTFLQKQGF 680
            +R+ GWV+T R+  KG F+FLE+NDGSC AN+Q IVD+ +   A++G  V TG  V + G L   P G  QK E+RVQ +  +G  D   YP+ K + + EFLR     R RTN   A  RIR+  A+A H F +++GF
Sbjct:   19 IRLCGWVRTRRD-AKG-FSFLEINDGSCLANIQAIVDEGIPAYANIGA-VSTGAAVDITGELVESP-GKGQKWEVRVQTLTLLGAADAETYPLQKKRHSDEFLRSIAHLRARTNKYGAAFRIRSEAAFAIHEFYRERGF 153          
BLAST of FC868535 vs. ExPASy Swiss-Prot
Match: SYN_CYTH3 (Asparaginyl-tRNA synthetase OS=Cytophaga hutchinsonii (strain ATCC 33406 / NCIMB 9469) GN=asnS PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 6.549e-21
Identity = 59/160 (36.88%), Postives = 93/160 (58.13%), Query Frame = 3
Query:  210 RVLIKSILTRPDGGAGLAGQQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVADLGQL--VPTGTCVYVEGMLKNPPEGTKQKIELRVQKVVDVGMVDPAKYPIPKTKLTLEFLRDRIPFRPRTNTIAAVARIRNALAYATHTFLQKQGFL 683
            R+ IK +L+     +    QQV + GWV+T R  G    AF+ +NDGS    +Q+++D    +  QL  V TG C+ + G +    +G  Q IE++   +  +G+ DP  YP+ K   +LEFLR+    RPRTNT + V R+R+A+A+A H+F  ++GF+
Sbjct:    3 RIKIKELLSN---SSQYIDQQVVLKGWVRTKR--GNKHVAFVALNDGSTIHTIQIVLDVAKFNEEQLKDVTTGACISISGKVVTS-QGAGQSIEVQGDTLEVIGVADPETYPLQKKGHSLEFLREIAHLRPRTNTFSCVLRLRHAMAFAVHSFFNEKGFV 156          
BLAST of FC868535 vs. ExPASy Swiss-Prot
Match: SYN_THEEB (Asparaginyl-tRNA synthetase OS=Thermosynechococcus elongatus (strain BP-1) GN=asnS PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.489e-20
Identity = 60/146 (41.10%), Postives = 80/146 (54.79%), Query Frame = 3
Query:  255 GLAGQQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVADLGQLVP---TGTCVYVEGMLKNPPEGTKQKIELRVQKVVDVGMVDPAKYPIPKTKLTLEFLRDRIPFRPRTNTIAAVARIRNALAYATHTFLQKQGFL 683
            G  G ++ V GWV+T RE  + +F  + +NDGS  A LQV++   VA     +    TG      G L   P G  Q IEL  +++   G  DP  YP+ K + + EFLR     RPRTNT+ AV R+RNA A A H F Q++GFL
Sbjct:   12 GQVGDRITVKGWVRTKRELKECTF--VNLNDGSTLAGLQVVIPNTVAAATPTMKDLTTGAAAEFTGELVRSP-GKNQAIELHAEEIHLWGTADPETYPLQKKRHSFEFLRTIAHLRPRTNTLGAVMRVRNACATAIHQFFQERGFL 154          
BLAST of FC868535 vs. ExPASy Swiss-Prot
Match: SYN_PASMU (Asparaginyl-tRNA synthetase OS=Pasteurella multocida GN=asnS PE=3 SV=2)

HSP 1 Score: 98.9821 bits (245), Expect = 2.489e-20
Identity = 60/144 (41.67%), Postives = 86/144 (59.72%), Query Frame = 3
Query:  264 GQQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVADLGQLV---PTGTCVYVEG-MLKNPPEGTKQKIELRVQKVVDVGMV-DPAKYPIPKTKLTLEFLRDRIPFRPRTNTIAAVARIRNALAYATHTFLQKQGF 680
            G+ V V GW++T R+  K   +FL + DGSC   +Q IV+ D+ +    V    TG  V V G ++++P EG  Q +EL+ +KV   G V DP  YP+   + ++E+LR+    RPRTN I AVAR+R+ LA A H F  +QGF
Sbjct:   18 GETVTVRGWIRTRRDS-KAGLSFLAIYDGSCFDPIQAIVNNDIENYETEVLRLTTGCSVIVTGTVVESPAEG--QAVELQAEKVEVAGWVEDPETYPMAAKRHSIEYLREVAHLRPRTNIIGAVARVRHCLAQAIHRFFHEQGF 158          
BLAST of FC868535 vs. ExPASy Swiss-Prot
Match: SYN_PARD8 (Asparaginyl-tRNA synthetase OS=Parabacteroides distasonis (strain ATCC 8503 / DSM 20701 / NCTC 11152) GN=asnS PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.489e-20
Identity = 58/141 (41.13%), Postives = 79/141 (56.03%), Query Frame = 3
Query:  264 GQQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVADLGQLVP--TGTCVYVEGMLKNPPEGTKQKIELRVQKVVDVGMVDPAKYPIPKTKLTLEFLRDRIPFRPRTNTIAAVARIRNALAYATHTFLQKQGF 680
            G  V V GWV+T R  G     F+ +NDGS   N+Q++VD D      L P  TG  + V G+L    +G  Q +E++  ++   G  DPA YP+ K   ++EFLR+    RPRTNT  AV RIR+ +AYA H F   +GF
Sbjct:   19 GTTVNVKGWVRTRR--GSKQVNFIALNDGSTINNVQIVVDVDKLGDEFLKPITTGASISVNGILTQS-QGKGQSVEIQATEIEIFGTADPATYPLQKKGHSMEFLREIAHLRPRTNTFGAVFRIRHNMAYAIHKFFHDRGF 156          
BLAST of FC868535 vs. ExPASy Swiss-Prot
Match: SYN_GEOMG (Asparaginyl-tRNA synthetase OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) GN=asnS PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.489e-20
Identity = 65/162 (40.12%), Postives = 94/162 (58.02%), Query Frame = 3
Query:  204 SDRVLIKSILTRPDGGAGLAGQQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVADLGQL--VPTGTCVYVEGMLKNPPEGTKQKIELRVQKVVDVGMVDPAKYPIPKTKLTLEFLRDRIPFRPRTNTIAAVARIRNALAYATHTFLQKQGFL 683
            S R+ I++ L     G GL G ++ V GWV+T R  GK   AFL +NDGSC ANLQV+ +  +A    +  + TG  V V G L + P  + Q  EL   +V  +G+ D + YP+ K + + E+LR     RPR+NT  AV R+R+++A A H F  ++GFL
Sbjct:    2 SARIRIRNALA----GEGL-GNEIMVKGWVRTIRT-GK-EVAFLALNDGSCFANLQVVAEPGLATFADVCAIGTGAAVAVRGRLVDSP-ASGQCYELHADEVAVIGLADES-YPLQKKRHSFEYLRSIAHLRPRSNTFGAVFRVRSSVAQAVHRFFAERGFL 154          
BLAST of FC868535 vs. ExPASy Swiss-Prot
Match: SYN_CLONN (Asparaginyl-tRNA synthetase OS=Clostridium novyi (strain NT) GN=asnS PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.489e-20
Identity = 60/161 (37.27%), Postives = 91/161 (56.52%), Query Frame = 3
Query:  207 DRVLIKSILTRPDGGAGLAGQQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVADLGQL--VPTGTCVYVEGMLKNPPEGTKQKIELRVQKVVDVGMVDPAKYPIPKTKLTLEFLRDRIPFRPRTNTIAAVARIRNALAYATHTFLQKQGFL 683
            + VL+K +    +     AG++V++ GW++T R   K  F F+EVNDGS   N+QV+   ++ +  ++      + + VEG +    EG KQ  E+  +KVV  G  D A YP+ K + T E+LR     RPR+N  +AV R+R+  AYA H F Q QGF+
Sbjct:    2 ETVLVKQLYRETEK---FAGKEVKISGWIRTLRASNK--FGFIEVNDGSFFKNIQVVFGAELENFKEISKYAISSSISVEGEVVIT-EGAKQPFEIHAKKVVLEGKSD-ADYPLQKKRHTFEYLRSIAHLRPRSNAFSAVFRVRSLAAYAIHKFFQDQGFV 155          
BLAST of FC868535 vs. ExPASy Swiss-Prot
Match: SYN_HAEPS (Asparaginyl-tRNA synthetase OS=Haemophilus parasuis serovar 5 (strain SH0165) GN=asnS PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.250e-20
Identity = 61/149 (40.94%), Postives = 88/149 (59.06%), Query Frame = 3
Query:  249 GAGLAGQQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVADLGQLV---PTGTCVYVEGML-KNPPEGTKQKIELRVQKVVDVGMV-DPAKYPIPKTKLTLEFLRDRIPFRPRTNTIAAVARIRNALAYATHTFLQKQGF 680
            G    G++V V GWV+T R+  K   +FL V DGSC   +Q I++ D+++    V     G  V V G++ ++P EG  Q +EL+ + V  VG V DP  YP+   + ++E+LR+    RPRTN I AVAR+R+ LA A H F  +QGF
Sbjct:   13 GKVAVGEEVAVRGWVRTRRDS-KAGLSFLAVYDGSCFDPIQAIINNDLSNYQDEVLRLTAGCSVIVTGVIVESPAEG--QAVELQAKSVEVVGWVEDPDTYPMAAKRHSIEYLREVAHLRPRTNLIGAVARVRHCLAQAIHRFFHEQGF 158          
BLAST of FC868535 vs. ExPASy Swiss-Prot
Match: SYN_DESDG (Asparaginyl-tRNA synthetase OS=Desulfovibrio desulfuricans (strain G20) GN=asnS PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.250e-20
Identity = 58/139 (41.73%), Postives = 82/139 (58.99%), Query Frame = 3
Query:  273 VRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDV---ADLGQLVPTGTCVYVEGMLKNPPEGTKQKIELRVQKVVDVGMVDPAKYPIPKTKLTLEFLRDRIPFRPRTNTIAAVARIRNALAYATHTFLQKQGF 680
            +R+ GWV+T R+  KG F+FLE+NDGSC  N+QVIVD++      +G+   TG  V + G L   P G  QK E+R   +  +G  DP  +P+ K + + E+LR     RPRTN   A  RIR   +YA H+F ++ GF
Sbjct:   19 IRICGWVRTRRD-AKG-FSFLELNDGSCLTNIQVIVDEETDAYRSVGEAT-TGASVDIRGQLVESP-GKGQKWEVRAATMTLLGKADPETFPLQKKRHSDEYLRTIAHLRPRTNKFGAAFRIRAEASYAVHSFFRENGF 153          
BLAST of FC868535 vs. ExPASy Swiss-Prot
Match: SYN_ACTPJ (Asparaginyl-tRNA synthetase OS=Actinobacillus pleuropneumoniae serotype 3 (strain JL03) GN=asnS PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.250e-20
Identity = 63/149 (42.28%), Postives = 86/149 (57.72%), Query Frame = 3
Query:  249 GAGLAGQQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVADLGQLV---PTGTCVYVEG-MLKNPPEGTKQKIELRVQKVVDVGMV-DPAKYPIPKTKLTLEFLRDRIPFRPRTNTIAAVARIRNALAYATHTFLQKQGF 680
            G    G++V V GWV+T R+  K   +FL V DGSC   LQ I++ D+A+    V     G  V V G ++++P EG  Q +EL    V  VG V DP  YP+   + ++E+LR+    RPRTN I AVAR+R+ LA A H F  +QGF
Sbjct:   13 GKVAVGEEVAVRGWVRTRRDS-KAGLSFLAVYDGSCFDPLQSIINNDLANYNDEVLRLTAGCSVIVTGKVVESPAEG--QAVELHATHVEVVGWVEDPDTYPMAAKRHSIEYLREVAHLRPRTNLIGAVARVRHCLAQAIHRFFNEQGF 158          
The following BLAST results are available for this feature:
BLAST of FC868535 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 168
Match NameE-valueIdentityDescription
SYN_DESVH6.549e-2144.60Asparaginyl-tRNA synthetase OS=Desulfovibrio vulga... [more]
SYN_CYTH36.549e-2136.88Asparaginyl-tRNA synthetase OS=Cytophaga hutchinso... [more]
SYN_THEEB2.489e-2041.10Asparaginyl-tRNA synthetase OS=Thermosynechococcus... [more]
SYN_PASMU2.489e-2041.67Asparaginyl-tRNA synthetase OS=Pasteurella multoci... [more]
SYN_PARD82.489e-2041.13Asparaginyl-tRNA synthetase OS=Parabacteroides dis... [more]
SYN_GEOMG2.489e-2040.12Asparaginyl-tRNA synthetase OS=Geobacter metallire... [more]
SYN_CLONN2.489e-2037.27Asparaginyl-tRNA synthetase OS=Clostridium novyi (... [more]
SYN_HAEPS3.250e-2040.94Asparaginyl-tRNA synthetase OS=Haemophilus parasui... [more]
SYN_DESDG3.250e-2041.73Asparaginyl-tRNA synthetase OS=Desulfovibrio desul... [more]
SYN_ACTPJ3.250e-2042.28Asparaginyl-tRNA synthetase OS=Actinobacillus pleu... [more]

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Properties
Property NameValue
Genbank descriptionC31001F04EF AbioticL1 Citrus clementina cDNA clone C31001F04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868535 ID=FC868535; Name=FC868535; organism=Citrus clementina; type=EST; length=683bp
AACCAAACCATCACCAAAGCAACGGCCTCAATCCCTGCGAACCAGCGGCC
ACTCAGAATCTTGCTGCTGCTCACAAACTTGCCATTGCTCACGATATATC
TCTCAGGTGCACTGTCTCCCCACCAATGGCAGATAACGAGCTGCCAGTCG
ACCAAGTTGCAACCATGGATTTAAATGATGATGCGGTGCAAAGACACCAA
TTCTCAGACCGTGTTCTGATCAAGTCTATTTTGACTCGACCTGATGGTGG
CGCTGGGCTAGCTGGGCAGCAAGTGCGAGTTGGAGGATGGGTGAAAACAG
GTCGTGAGCAAGGGAAAGGCTCTTTTGCTTTTCTGGAGGTGAATGATGGG
TCATGCCCTGCTAATTTGCAGGTTATTGTGGACAAGGATGTAGCAGATTT
AGGCCAGCTGGTGCCAACTGGCACTTGTGTTTATGTTGAGGGCATGCTTA
AAAACCCTCCTGAGGGGACTAAACAGAAGATTGAGCTTCGGGTTCAGAAA
GTGGTCGATGTGGGTATGGTTGACCCTGCTAAGTACCCTATCCCCAAGAC
AAAGCTCACTCTTGAGTTTTTGAGGGATCGTATTCCTTTTCGGCCCAGGA
CAAACACGATAGCTGCGGTTGCACGAATTCGAAATGCACTTGCTTATGCC
ACTCATACATTCCTTCAGAAGCAAGGGTTTCTC
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