FC868535

Overview
NameFC868535
Unique NameFC868535
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length683
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868535 vs. ExPASy Swiss-Prot
Match: SYN_HAEIN (Asparaginyl-tRNA synthetase OS=Haemophilus influenzae GN=asnS PE=3 SV=2)

HSP 1 Score: 98.2117 bits (243), Expect = 4.245e-20
Identity = 59/144 (40.97%), Postives = 86/144 (59.72%), Query Frame = 3
Query:  264 GQQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVADLGQLV---PTGTCVYVEG-MLKNPPEGTKQKIELRVQKVVDVGMV-DPAKYPIPKTKLTLEFLRDRIPFRPRTNTIAAVARIRNALAYATHTFLQKQGF 680
            G+ V V GWV+T R+  K   +FL V DGSC   +Q I++ D+ +    +    TG  V V G ++++P EG  Q +EL+ +KV   G V DP  YP+   + ++E+LR+    RPRTN I AVAR+R+ L+ A H F  +QGF
Sbjct:   18 GETVTVRGWVRTRRDS-KAGLSFLAVYDGSCFDPIQAIINNDIENYESEILRLTTGCSVIVTGKVVESPAEG--QAVELQAEKVEVTGFVEDPDTYPMAAKRHSIEYLREVAHLRPRTNIIGAVARVRHCLSQAIHRFFHEQGF 158          
BLAST of FC868535 vs. ExPASy Swiss-Prot
Match: SYN_HAEIG (Asparaginyl-tRNA synthetase OS=Haemophilus influenzae (strain PittGG) GN=asnS PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.245e-20
Identity = 59/144 (40.97%), Postives = 86/144 (59.72%), Query Frame = 3
Query:  264 GQQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVADLGQLV---PTGTCVYVEG-MLKNPPEGTKQKIELRVQKVVDVGMV-DPAKYPIPKTKLTLEFLRDRIPFRPRTNTIAAVARIRNALAYATHTFLQKQGF 680
            G+ V V GWV+T R+  K   +FL V DGSC   +Q I++ D+ +    +    TG  V V G ++++P EG  Q +EL+ +KV   G V DP  YP+   + ++E+LR+    RPRTN I AVAR+R+ L+ A H F  +QGF
Sbjct:   18 GETVTVRGWVRTRRDS-KAGLSFLAVYDGSCFDPIQAIINNDIENYESEILRLTTGCSVIVTGKVVESPAEG--QAVELQAEKVEVTGFVEDPDTYPMAAKRHSIEYLREVAHLRPRTNIIGAVARVRHCLSQAIHRFFHEQGF 158          
BLAST of FC868535 vs. ExPASy Swiss-Prot
Match: SYN_CLOBL (Asparaginyl-tRNA synthetase OS=Clostridium botulinum (strain Langeland / NCTC 10281 / Type F) GN=asnS PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.245e-20
Identity = 59/161 (36.65%), Postives = 93/161 (57.76%), Query Frame = 3
Query:  207 DRVLIKSILTRPDGGAGLAGQQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVADLGQL--VPTGTCVYVEGMLKNPPEGTKQKIELRVQKVVDVGMVDPAKYPIPKTKLTLEFLRDRIPFRPRTNTIAAVARIRNALAYATHTFLQKQGFL 683
            D  L+KS+    +       ++V++ GWV+T R+    +FAF+EVNDGS   N+QVI++  + +  +L  +P  T V VEG+++ P    KQ  E++  +V   G      YP+ K + T E+LR     RPR+N  +AV R+R+  AYA H F Q++GF+
Sbjct:    2 DITLVKSLYREAEK---YMDKEVKINGWVRTVRDSK--NFAFVEVNDGSFFKNVQVILESSLENFKELCKMPISTSVEVEGIIQ-PTPNAKQPFEIKATRVSIEGK-SSTDYPLQKKRHTFEYLRTIAHLRPRSNAFSAVFRVRSLAAYAVHKFFQERGFV 155          
BLAST of FC868535 vs. ExPASy Swiss-Prot
Match: SYN_ACTP7 (Asparaginyl-tRNA synthetase OS=Actinobacillus pleuropneumoniae serotype 7 (strain AP76) GN=asnS PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 5.544e-20
Identity = 62/149 (41.61%), Postives = 86/149 (57.72%), Query Frame = 3
Query:  249 GAGLAGQQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVADLGQLV---PTGTCVYVEG-MLKNPPEGTKQKIELRVQKVVDVGMV-DPAKYPIPKTKLTLEFLRDRIPFRPRTNTIAAVARIRNALAYATHTFLQKQGF 680
            G    G++V V GWV+T R+  K   +FL V DGSC   +Q I++ D+A+    V     G  V V G ++++P EG  Q +EL    V  VG V DP  YP+   + ++E+LR+    RPRTN I AVAR+R+ LA A H F  +QGF
Sbjct:   13 GKVAVGEEVAVRGWVRTRRDS-KAGLSFLAVYDGSCFDPIQSIINNDLANYNDEVLRLTAGCSVIVTGKVVESPAEG--QAVELHATHVEVVGWVEDPDTYPMAAKRHSIEYLREVAHLRPRTNLIGAVARVRHCLAQAIHRFFNEQGF 158          
BLAST of FC868535 vs. ExPASy Swiss-Prot
Match: SYN_ACTP2 (Asparaginyl-tRNA synthetase OS=Actinobacillus pleuropneumoniae serotype 5b (strain L20) GN=asnS PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 5.544e-20
Identity = 62/149 (41.61%), Postives = 86/149 (57.72%), Query Frame = 3
Query:  249 GAGLAGQQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVADLGQLV---PTGTCVYVEG-MLKNPPEGTKQKIELRVQKVVDVGMV-DPAKYPIPKTKLTLEFLRDRIPFRPRTNTIAAVARIRNALAYATHTFLQKQGF 680
            G    G++V V GWV+T R+  K   +FL V DGSC   +Q I++ D+A+    V     G  V V G ++++P EG  Q +EL    V  VG V DP  YP+   + ++E+LR+    RPRTN I AVAR+R+ LA A H F  +QGF
Sbjct:   13 GKVAVGEEVAVRGWVRTRRDS-KAGLSFLAVYDGSCFDPIQSIINNDLANYNDEVLRLTAGCSVIVTGKVVESPAEG--QAVELHATHVEVVGWVEDPDTYPMAAKRHSIEYLREVAHLRPRTNLIGAVARVRHCLAQAIHRFFNEQGF 158          
BLAST of FC868535 vs. ExPASy Swiss-Prot
Match: SYN_BORBU (Asparaginyl-tRNA synthetase OS=Borrelia burgdorferi GN=asnS PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 7.241e-20
Identity = 57/160 (35.62%), Postives = 88/160 (55.00%), Query Frame = 3
Query:  219 IKSILTRPDGGAGLAGQQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDV-----ADLGQLVPTGTCVYVEGML-KNPPEGTKQKIELRVQKVVDVGMVDPAKYPIPKTKLTLEFLRDRIPFRPRTNTIAAVARIRNALAYATHTFLQKQGF 680
            IK IL  P     +    V + GW++T R  GK    F+E+NDGS    +Q +++++       DL +L  TGT + + G+L ++P +G  Q  E++      +G  DP  YP+ K + + EFLR+    R RTNT  A+AR+RN ++Y  H + QK GF
Sbjct:    9 IKDILKNP-----ILNSNVTINGWIRTKRSNGK--IGFIEINDGSTLKGIQAVINEEENQFSEKDLKKLT-TGTSISLTGLLVESPAKG--QNYEIKTHSFNVIGETDPETYPLQKKRHSFEFLREIPHLRIRTNTFGAIARVRNKISYKIHEYFQKNGF 158          
BLAST of FC868535 vs. ExPASy Swiss-Prot
Match: SYN_LAWIP (Asparaginyl-tRNA synthetase OS=Lawsonia intracellularis (strain PHE/MN1-00) GN=asnS PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 9.457e-20
Identity = 61/142 (42.96%), Postives = 81/142 (57.04%), Query Frame = 3
Query:  261 AGQQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVA--DLGQLVPTGTCVYVEGMLKNPPEGTKQKIELRVQKVVDVGMVDPAKYPIPKTKLTLEFLRDRIPFRPRTNTIAAVARIRNALAYATHTFLQKQGF 680
            A   V VGGW++T R   KG F FLE+NDGSC  N+Q I+++  A  D+   V TG CV V G L  P  G  Q  E++V+K+V  G+  P  +P+ K + + EFLR     R RTN   A+ RIR   A A H +  K+GF
Sbjct:   15 AQADVHVGGWIRT-RRNAKG-FVFLELNDGSCLKNIQCIINEGSAAWDMLDGVNTGACVSVYGKLV-PSPGRGQDWEIQVEKMVVHGLAAPEVFPLQKKRHSDEFLRTIAHLRVRTNKYGAIFRIRAEAAQAIHNYFYKKGF 153          
BLAST of FC868535 vs. ExPASy Swiss-Prot
Match: SYN_HAEIE (Asparaginyl-tRNA synthetase OS=Haemophilus influenzae (strain PittEE) GN=asnS PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 9.457e-20
Identity = 58/144 (40.28%), Postives = 86/144 (59.72%), Query Frame = 3
Query:  264 GQQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVADLGQLV---PTGTCVYVEG-MLKNPPEGTKQKIELRVQKVVDVGMV-DPAKYPIPKTKLTLEFLRDRIPFRPRTNTIAAVARIRNALAYATHTFLQKQGF 680
            G+ V V GWV+T R+  K   +FL V DGSC   +Q I++ D+ +    +    TG  V V G ++++P EG  Q +EL+ +KV   G V DP  YP+   + ++E+LR+    RPRTN I AV+R+R+ L+ A H F  +QGF
Sbjct:   18 GETVTVRGWVRTRRDS-KAGLSFLAVYDGSCFDPIQAIINNDIKNYESEILRLTTGCSVIVTGKVVESPSEG--QAVELQAEKVEVTGFVEDPDTYPMAAKRHSIEYLREVAHLRPRTNIIGAVSRVRHCLSQAIHRFFHEQGF 158          
BLAST of FC868535 vs. ExPASy Swiss-Prot
Match: SYN_CLOBH (Asparaginyl-tRNA synthetase OS=Clostridium botulinum (strain Hall / ATCC 3502 / NCTC 13319 / Type A) GN=asnS PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 9.457e-20
Identity = 54/141 (38.30%), Postives = 86/141 (60.99%), Query Frame = 3
Query:  267 QQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVADLGQL--VPTGTCVYVEGMLKNPPEGTKQKIELRVQKVVDVGMVDPAKYPIPKTKLTLEFLRDRIPFRPRTNTIAAVARIRNALAYATHTFLQKQGFL 683
            ++V++ GWV+T R+    +FAF+EVNDGS   N+QVI++  + +  +L  +P  T V VEG+++ P    KQ  E++  ++   G      YP+ K + T E+LR     RPR+N  +AV R+R+  AYA H F Q++GF+
Sbjct:   19 KEVKINGWVRTVRDSK--NFAFVEVNDGSFFKNVQVILESSLENFKELCKMPISTSVEVEGIVQ-PTPNAKQPFEIKATRISIEGK-SSTDYPLQKKRHTFEYLRTIAHLRPRSNAFSAVFRVRSLAAYAVHKFFQERGFV 155          
BLAST of FC868535 vs. ExPASy Swiss-Prot
Match: SYN_CLOB1 (Asparaginyl-tRNA synthetase OS=Clostridium botulinum (strain ATCC 19397 / Type A) GN=asnS PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 9.457e-20
Identity = 54/141 (38.30%), Postives = 86/141 (60.99%), Query Frame = 3
Query:  267 QQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVADLGQL--VPTGTCVYVEGMLKNPPEGTKQKIELRVQKVVDVGMVDPAKYPIPKTKLTLEFLRDRIPFRPRTNTIAAVARIRNALAYATHTFLQKQGFL 683
            ++V++ GWV+T R+    +FAF+EVNDGS   N+QVI++  + +  +L  +P  T V VEG+++ P    KQ  E++  ++   G      YP+ K + T E+LR     RPR+N  +AV R+R+  AYA H F Q++GF+
Sbjct:   19 KEVKINGWVRTVRDSK--NFAFVEVNDGSFFKNVQVILESSLENFKELCKMPISTSVEVEGIVQ-PTPNAKQPFEIKATRISIEGK-SSTDYPLQKKRHTFEYLRTIAHLRPRSNAFSAVFRVRSLAAYAVHKFFQERGFV 155          
The following BLAST results are available for this feature:
BLAST of FC868535 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 168
Match NameE-valueIdentityDescription
SYN_HAEIN4.245e-2040.97Asparaginyl-tRNA synthetase OS=Haemophilus influen... [more]
SYN_HAEIG4.245e-2040.97Asparaginyl-tRNA synthetase OS=Haemophilus influen... [more]
SYN_CLOBL4.245e-2036.65Asparaginyl-tRNA synthetase OS=Clostridium botulin... [more]
SYN_ACTP75.544e-2041.61Asparaginyl-tRNA synthetase OS=Actinobacillus pleu... [more]
SYN_ACTP25.544e-2041.61Asparaginyl-tRNA synthetase OS=Actinobacillus pleu... [more]
SYN_BORBU7.241e-2035.63Asparaginyl-tRNA synthetase OS=Borrelia burgdorfer... [more]
SYN_LAWIP9.457e-2042.96Asparaginyl-tRNA synthetase OS=Lawsonia intracellu... [more]
SYN_HAEIE9.457e-2040.28Asparaginyl-tRNA synthetase OS=Haemophilus influen... [more]
SYN_CLOBH9.457e-2038.30Asparaginyl-tRNA synthetase OS=Clostridium botulin... [more]
SYN_CLOB19.457e-2038.30Asparaginyl-tRNA synthetase OS=Clostridium botulin... [more]

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Properties
Property NameValue
Genbank descriptionC31001F04EF AbioticL1 Citrus clementina cDNA clone C31001F04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868535 ID=FC868535; Name=FC868535; organism=Citrus clementina; type=EST; length=683bp
AACCAAACCATCACCAAAGCAACGGCCTCAATCCCTGCGAACCAGCGGCC
ACTCAGAATCTTGCTGCTGCTCACAAACTTGCCATTGCTCACGATATATC
TCTCAGGTGCACTGTCTCCCCACCAATGGCAGATAACGAGCTGCCAGTCG
ACCAAGTTGCAACCATGGATTTAAATGATGATGCGGTGCAAAGACACCAA
TTCTCAGACCGTGTTCTGATCAAGTCTATTTTGACTCGACCTGATGGTGG
CGCTGGGCTAGCTGGGCAGCAAGTGCGAGTTGGAGGATGGGTGAAAACAG
GTCGTGAGCAAGGGAAAGGCTCTTTTGCTTTTCTGGAGGTGAATGATGGG
TCATGCCCTGCTAATTTGCAGGTTATTGTGGACAAGGATGTAGCAGATTT
AGGCCAGCTGGTGCCAACTGGCACTTGTGTTTATGTTGAGGGCATGCTTA
AAAACCCTCCTGAGGGGACTAAACAGAAGATTGAGCTTCGGGTTCAGAAA
GTGGTCGATGTGGGTATGGTTGACCCTGCTAAGTACCCTATCCCCAAGAC
AAAGCTCACTCTTGAGTTTTTGAGGGATCGTATTCCTTTTCGGCCCAGGA
CAAACACGATAGCTGCGGTTGCACGAATTCGAAATGCACTTGCTTATGCC
ACTCATACATTCCTTCAGAAGCAAGGGTTTCTC
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