FC868535

Overview
NameFC868535
Unique NameFC868535
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length683
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868535 vs. ExPASy Swiss-Prot
Match: SYN_SALTY (Asparaginyl-tRNA synthetase OS=Salmonella typhimurium GN=asnS PE=3 SV=2)

HSP 1 Score: 93.2041 bits (230), Expect = 1.366e-18
Identity = 57/142 (40.14%), Postives = 80/142 (56.34%), Query Frame = 3
Query:  267 QQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVADLGQLV---PTGTCVYVEGMLKNPPEGTKQKIELRVQKVVDVGMV-DPAKYPIPKTKLTLEFLRDRIPFRPRTNTIAAVARIRNALAYATHTFLQKQGF 680
            Q+V V GWV+T R+  K   +FL V DGSC   +Q +++  + +  + V    TG  V V G +   P G  Q  E++  KV   G V DP  YP+   + ++E+LR+    RPRTN I AVAR+R+ LA A H F  +QGF
Sbjct:   18 QEVTVRGWVRTRRDS-KAGISFLAVYDGSCFDPVQAVINNSLPNYNEEVLHLTTGCSVVVTGKVVASP-GQGQSFEIQATKVEVAGWVEDPDTYPMAAKRHSIEYLREVAHLRPRTNLIGAVARVRHTLAQALHRFFDEQGF 157          
BLAST of FC868535 vs. ExPASy Swiss-Prot
Match: SYN_SALTI (Asparaginyl-tRNA synthetase OS=Salmonella typhi GN=asnS PE=3 SV=3)

HSP 1 Score: 93.2041 bits (230), Expect = 1.366e-18
Identity = 57/142 (40.14%), Postives = 80/142 (56.34%), Query Frame = 3
Query:  267 QQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVADLGQLV---PTGTCVYVEGMLKNPPEGTKQKIELRVQKVVDVGMV-DPAKYPIPKTKLTLEFLRDRIPFRPRTNTIAAVARIRNALAYATHTFLQKQGF 680
            Q+V V GWV+T R+  K   +FL V DGSC   +Q +++  + +  + V    TG  V V G +   P G  Q  E++  KV   G V DP  YP+   + ++E+LR+    RPRTN I AVAR+R+ LA A H F  +QGF
Sbjct:   18 QEVTVRGWVRTRRDS-KAGISFLAVYDGSCFDPVQAVINNSLPNYNEEVLHLTTGCSVVVTGKVVASP-GQGQSFEIQATKVEVAGWVEDPDTYPMAAKRHSIEYLREVAHLRPRTNLIGAVARVRHTLAQALHRFFDEQGF 157          
BLAST of FC868535 vs. ExPASy Swiss-Prot
Match: SYN_SALPA (Asparaginyl-tRNA synthetase OS=Salmonella paratyphi A GN=asnS PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.366e-18
Identity = 57/142 (40.14%), Postives = 80/142 (56.34%), Query Frame = 3
Query:  267 QQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVADLGQLV---PTGTCVYVEGMLKNPPEGTKQKIELRVQKVVDVGMV-DPAKYPIPKTKLTLEFLRDRIPFRPRTNTIAAVARIRNALAYATHTFLQKQGF 680
            Q+V V GWV+T R+  K   +FL V DGSC   +Q +++  + +  + V    TG  V V G +   P G  Q  E++  KV   G V DP  YP+   + ++E+LR+    RPRTN I AVAR+R+ LA A H F  +QGF
Sbjct:   18 QEVTVRGWVRTRRDS-KAGISFLAVYDGSCFDPVQAVINNSLPNYNEEVLHLTTGCSVVVTGKVVASP-GQGQSFEIQATKVEVAGWVEDPDTYPMAAKRHSIEYLREVAHLRPRTNLIGAVARVRHTLAQALHRFFDEQGF 157          
BLAST of FC868535 vs. ExPASy Swiss-Prot
Match: SYN_SALCH (Asparaginyl-tRNA synthetase OS=Salmonella choleraesuis GN=asnS PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.366e-18
Identity = 57/142 (40.14%), Postives = 80/142 (56.34%), Query Frame = 3
Query:  267 QQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVADLGQLV---PTGTCVYVEGMLKNPPEGTKQKIELRVQKVVDVGMV-DPAKYPIPKTKLTLEFLRDRIPFRPRTNTIAAVARIRNALAYATHTFLQKQGF 680
            Q+V V GWV+T R+  K   +FL V DGSC   +Q +++  + +  + V    TG  V V G +   P G  Q  E++  KV   G V DP  YP+   + ++E+LR+    RPRTN I AVAR+R+ LA A H F  +QGF
Sbjct:   18 QEVTVRGWVRTRRDS-KAGISFLAVYDGSCFDPVQAVINNSLPNYNEEVLHLTTGCSVVVTGKVVASP-GQGQSFEIQATKVEVAGWVEDPDTYPMAAKRHSIEYLREVAHLRPRTNLIGAVARVRHTLAQALHRFFDEQGF 157          
BLAST of FC868535 vs. ExPASy Swiss-Prot
Match: SYN_CLOTE (Asparaginyl-tRNA synthetase OS=Clostridium tetani GN=asnS PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.366e-18
Identity = 56/160 (35.00%), Postives = 89/160 (55.62%), Query Frame = 3
Query:  210 RVLIKSILTRPDGGAGLAGQQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVADLGQL--VPTGTCVYVEGMLKNPPEGTKQKIELRVQKVVDVGMVDPAKYPIPKTKLTLEFLRDRIPFRPRTNTIAAVARIRNALAYATHTFLQKQGFL 683
            ++ IK +   P+       + + V GW++T  E+   +F F+E+NDGS   NLQ+I+D ++ +  ++  +P  + + VEG L   P   KQ  E++  KV   G      YP+ K + + EFLR     RPR+NT +AV RIR+  AYA H F Q++ F+
Sbjct:    3 KISIKQLYREPEK---FINKDIVVAGWIRT--ERTSKNFGFIELNDGSFFKNLQIIIDTNLDNFDKVSKLPISSSIVVEGKLVATPSA-KQPFEVQASKVTVEG-TSLQDYPLQKKRHSFEFLRSIAHLRPRSNTFSAVFRIRSLAAYAVHKFFQEKNFV 155          
BLAST of FC868535 vs. ExPASy Swiss-Prot
Match: SYN_BACCR (Asparaginyl-tRNA synthetase OS=Bacillus cereus (strain ATCC 14579 / DSM 31) GN=asnS PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.783e-18
Identity = 51/143 (35.66%), Postives = 86/143 (60.14%), Query Frame = 3
Query:  261 AGQQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVADLGQL--VPTGTCVYVEGMLKNPPEGTKQKIELRVQKVVDVGMVDPAKYPIPKTKLTLEFLRDRIPFRPRTNTIAAVARIRNALAYATHTFLQKQGFL 683
            A Q V+V GW++  R+    +F F+E+NDGS   ++Q++ D ++ +  ++  +P  + V VEG +   P G KQ  E++ +K+   G+ D + YP+ K + T E+LR     RPRTN  +A  R+R+  A+A H F Q++GF+
Sbjct:   17 ADQTVQVSGWIRNLRDSK--AFGFIELNDGSFFKSVQIVFDTELENFKEIAKLPLSSSVKVEGKVIATP-GAKQPFEIKAEKIDIEGLSD-SDYPLQKKRHTFEYLRTIAHLRPRTNAFSATFRVRSIAAFAIHQFFQERGFV 155          
BLAST of FC868535 vs. ExPASy Swiss-Prot
Match: SYN_SHEFN (Asparaginyl-tRNA synthetase OS=Shewanella frigidimarina (strain NCIMB 400) GN=asnS PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.329e-18
Identity = 58/149 (38.93%), Postives = 81/149 (54.36%), Query Frame = 3
Query:  249 GAGLAGQQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVADLGQLV---PTGTCVYVEGMLKNPPEGTKQKIELRVQKVVDVGMVD-PAKYPIPKTKLTLEFLRDRIPFRPRTNTIAAVARIRNALAYATHTFLQKQGFL 683
            G    G QV V GWV+T R+  K   +FL V DGSC   +Q ++   +A+    V     G  V + G +   P G  Q  EL+V ++V  G VD P  YP+   + ++E LR+    RPRTN I AVAR+RN L+ A H F  ++GF+
Sbjct:   12 GEHAVGSQVTVRGWVRTRRDS-KAGISFLAVYDGSCFDPIQGVLPNSLANYNDDVLKLTAGCSVVMTGEVVASP-GAGQAFELQVTEIVVTGFVDDPDTYPMSAKRHSIEHLRELAHLRPRTNIIGAVARVRNCLSQAIHRFYHQEGFI 158          
BLAST of FC868535 vs. ExPASy Swiss-Prot
Match: SYN_SHELP (Asparaginyl-tRNA synthetase OS=Shewanella loihica (strain ATCC BAA-1088 / PV-4) GN=asnS PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.042e-18
Identity = 57/144 (39.58%), Postives = 79/144 (54.86%), Query Frame = 3
Query:  264 GQQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVADLGQLV---PTGTCVYVEGMLKNPPEGTKQKIELRVQKVVDVGMV-DPAKYPIPKTKLTLEFLRDRIPFRPRTNTIAAVARIRNALAYATHTFLQKQGFL 683
            G QV V GWV+T R+  K   +FL V DGSC   +Q +V   + +    +     G  V + G L   P G  Q  E++V KV   G V DP  YP+   + ++E LR+    RPRTN I AVAR+RN L++A H F  ++GF+
Sbjct:   17 GSQVTVRGWVRTRRDS-KAGISFLAVYDGSCFDPIQGVVPNSLDNYNDEILRLTAGCSVVMTGELVESP-GKGQAFEMQVTKVEVTGWVEDPDTYPMAAKRHSIEHLRELAHLRPRTNIIGAVARVRNCLSHAIHNFYNEEGFI 158          
BLAST of FC868535 vs. ExPASy Swiss-Prot
Match: SYN_BACFR (Asparaginyl-tRNA synthetase OS=Bacteroides fragilis GN=asnS PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.042e-18
Identity = 62/159 (38.99%), Postives = 86/159 (54.09%), Query Frame = 3
Query:  210 RVLIKSILTRPDGGAGLAGQQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVADLGQL--VPTGTCVYVEGMLKNPPEGTKQKIELRVQKVVDVGMVDPAKYPIPKTKLTLEFLRDRIPFRPRTNTIAAVARIRNALAYATHTFLQKQGF 680
            R  I  ++ R D GA      V V GWV+T R  G     F+ +NDGS   N+QV+VD    D   L  + TG C+ V G+L     G  QK E++ +++  +G  D   YP+ K   ++EFLR+    RPRTNT  AV RIR+ +A A H F  ++GF
Sbjct:    6 RTKIVDLMKREDFGA-----MVNVKGWVRTRR--GSKQVNFIALNDGSTINNVQVVVDLANFDEEMLKQITTGACLSVNGVLTESV-GAGQKAEVQAREIEVLGTCDNT-YPLQKKGHSMEFLREIAHLRPRTNTFGAVFRIRHNMAIAIHKFFHEKGF 155          
BLAST of FC868535 vs. ExPASy Swiss-Prot
Match: SYN_BACFN (Asparaginyl-tRNA synthetase OS=Bacteroides fragilis (strain ATCC 25285 / NCTC 9343) GN=asnS PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.042e-18
Identity = 62/159 (38.99%), Postives = 86/159 (54.09%), Query Frame = 3
Query:  210 RVLIKSILTRPDGGAGLAGQQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVADLGQL--VPTGTCVYVEGMLKNPPEGTKQKIELRVQKVVDVGMVDPAKYPIPKTKLTLEFLRDRIPFRPRTNTIAAVARIRNALAYATHTFLQKQGF 680
            R  I  ++ R D GA      V V GWV+T R  G     F+ +NDGS   N+QV+VD    D   L  + TG C+ V G+L     G  QK E++ +++  +G  D   YP+ K   ++EFLR+    RPRTNT  AV RIR+ +A A H F  ++GF
Sbjct:    6 RTKIVDLMKREDFGA-----MVNVKGWVRTRR--GSKQVNFIALNDGSTINNVQVVVDLANFDEEMLKQITTGACLSVNGVLTESV-GAGQKAEVQAREIEVLGTCDNT-YPLQKKGHSMEFLREIAHLRPRTNTFGAVFRIRHNMAIAIHKFFHEKGF 155          
The following BLAST results are available for this feature:
BLAST of FC868535 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 168
Match NameE-valueIdentityDescription
SYN_SALTY1.366e-1840.14Asparaginyl-tRNA synthetase OS=Salmonella typhimur... [more]
SYN_SALTI1.366e-1840.14Asparaginyl-tRNA synthetase OS=Salmonella typhi GN... [more]
SYN_SALPA1.366e-1840.14Asparaginyl-tRNA synthetase OS=Salmonella paratyph... [more]
SYN_SALCH1.366e-1840.14Asparaginyl-tRNA synthetase OS=Salmonella cholerae... [more]
SYN_CLOTE1.366e-1835.00Asparaginyl-tRNA synthetase OS=Clostridium tetani ... [more]
SYN_BACCR1.783e-1835.66Asparaginyl-tRNA synthetase OS=Bacillus cereus (st... [more]
SYN_SHEFN2.329e-1838.93Asparaginyl-tRNA synthetase OS=Shewanella frigidim... [more]
SYN_SHELP3.042e-1839.58Asparaginyl-tRNA synthetase OS=Shewanella loihica ... [more]
SYN_BACFR3.042e-1838.99Asparaginyl-tRNA synthetase OS=Bacteroides fragili... [more]
SYN_BACFN3.042e-1838.99Asparaginyl-tRNA synthetase OS=Bacteroides fragili... [more]

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Properties
Property NameValue
Genbank descriptionC31001F04EF AbioticL1 Citrus clementina cDNA clone C31001F04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868535 ID=FC868535; Name=FC868535; organism=Citrus clementina; type=EST; length=683bp
AACCAAACCATCACCAAAGCAACGGCCTCAATCCCTGCGAACCAGCGGCC
ACTCAGAATCTTGCTGCTGCTCACAAACTTGCCATTGCTCACGATATATC
TCTCAGGTGCACTGTCTCCCCACCAATGGCAGATAACGAGCTGCCAGTCG
ACCAAGTTGCAACCATGGATTTAAATGATGATGCGGTGCAAAGACACCAA
TTCTCAGACCGTGTTCTGATCAAGTCTATTTTGACTCGACCTGATGGTGG
CGCTGGGCTAGCTGGGCAGCAAGTGCGAGTTGGAGGATGGGTGAAAACAG
GTCGTGAGCAAGGGAAAGGCTCTTTTGCTTTTCTGGAGGTGAATGATGGG
TCATGCCCTGCTAATTTGCAGGTTATTGTGGACAAGGATGTAGCAGATTT
AGGCCAGCTGGTGCCAACTGGCACTTGTGTTTATGTTGAGGGCATGCTTA
AAAACCCTCCTGAGGGGACTAAACAGAAGATTGAGCTTCGGGTTCAGAAA
GTGGTCGATGTGGGTATGGTTGACCCTGCTAAGTACCCTATCCCCAAGAC
AAAGCTCACTCTTGAGTTTTTGAGGGATCGTATTCCTTTTCGGCCCAGGA
CAAACACGATAGCTGCGGTTGCACGAATTCGAAATGCACTTGCTTATGCC
ACTCATACATTCCTTCAGAAGCAAGGGTTTCTC
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