FC868560

Overview
NameFC868560
Unique NameFC868560
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length697
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868560 vs. ExPASy Swiss-Prot
Match: TDH_BACA2 (L-threonine 3-dehydrogenase OS=Bacillus amyloliquefaciens (strain FZB42) GN=tdh PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.738e-24
Identity = 62/191 (32.46%), Postives = 103/191 (53.93%), Query Frame = 1
Query:  124 IQPLELPSLGPYDVLVRMKAVGVCGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLGARAFGAPRIVIVDVDDYRLSV 696
            ++ + +PS+   +VL++++A  +CG+DVH     + A   +K P V GHE +G++ + G  V  +  GD V+ E    C  C  C  G++++C  +K LG     G  A  V  PA   +K P ++     ++ EPL   VH    ++     +  I+G GPIGL+ +  A+A GA RI  +D +DYRL++
Sbjct:   19 LKEIPIPSINENEVLIKVQAASICGTDVHIYNWDQWAQKRIKTPQVFGHEFSGIVAETGKHVTNVKTGDYVSAETHFVCGTCVPCLTGKHHVCTHTKILGVDTA-GSFAEYVKVPARNVWKNPADMDPAVASVQEPLGNAVHTVLESSQLAGGSAAIIGCGPIGLMAVAVAKAAGASRIAAIDKNDYRLAL 208          
BLAST of FC868560 vs. ExPASy Swiss-Prot
Match: Y053_HAEIN (Uncharacterized zinc-type alcohol dehydrogenase-like protein HI0053 OS=Haemophilus influenzae GN=HI0053 PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 6.606e-24
Identity = 64/194 (32.99%), Postives = 109/194 (56.19%), Query Frame = 1
Query:  112 NTLKIQPLELPSLGPYDVLVRMKAVGVCGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVP-GDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLGARAFGAPRIVIVDVDDYRL 690
            N + ++ +  P     DVL++++++G+CGSD+      R  + +V  P ++GHE  G + + G  +   V  GDRV ++P + C QC  C  GR N C   K +G   + G +   + HPA L  K+PDN+ + +  + EPL++ +HA  R  +    +++I+G+G IGL+  L A  +GA  I +VD+ + RL
Sbjct:   14 NNVVVKEVPYPEKSDNDVLIQVESMGICGSDIG---AYRGTNPLVTYPRILGHEIVGRVIESGIGMSDGVRVGDRVIVDPYVCCGQCYPCSIGRTNCCESLKVIGVH-IDGGMQEVIRHPAHLLTKVPDNLPIHQLPLAEPLTIALHALHRTTLKSGEHIVIIGAGAIGLMAALAAVQYGAIPI-LVDILEQRL 202          
BLAST of FC868560 vs. ExPASy Swiss-Prot
Match: TDH_STRAW (L-threonine 3-dehydrogenase OS=Streptomyces avermitilis GN=tdh PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 6.606e-24
Identity = 71/207 (34.30%), Postives = 104/207 (50.24%), Query Frame = 1
Query:   76 EEVNMAAWLMGVNTLKIQPLELPSLGPYDVLVRMKAVGVCGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLGARAFGAPRIVIVDVDDYRLSV 696
            E+     WLM V          P +GP DVL+++   G+CG+D+H       A   V+ P+V+GHE  G + + G +V  +  GDRV+ E  + C +C  C+ GR +LC  + GLG     G  A  V  PA   +     V L+  A+ +P    VH      +  E +VLI G+GPIGL+    AR  GA  ++I DV + RL +
Sbjct:    7 EKAEPGLWLMDVPE--------PEIGPGDVLIKVLRTGICGTDLHIRSWDGWAQQAVRTPLVLGHEFVGEVVETGRDVVDIKAGDRVSGEGHLVCGKCRNCQAGRRHLCRATVGLGVGR-DGAFAEYVALPAANVWVHRVPVDLDVAAIFDPFGNAVHTALSFPLVGE-DVLITGAGPIGLMAAAVARHAGARNVMITDVSEERLEL 203          
BLAST of FC868560 vs. ExPASy Swiss-Prot
Match: TDH_PYRFU (Probable L-threonine 3-dehydrogenase OS=Pyrococcus furiosus GN=tdh PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 6.606e-24
Identity = 61/185 (32.97%), Postives = 103/185 (55.68%), Query Frame = 1
Query:  133 LELPSLGPYDVLVRMKAVGVCGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLGARAFGAPRIVIVDVDDYR 687
            +++P  GP +VL+++ A  +CG+D+H  +    A   ++ P ++GHE AG + +VG  V+ +  GD V++E  I C +C  CK G+Y++C  +K  G     G  A   V PA   +K P N+  E   + EPL   V       I  + +VLI G+GP+GL+ +  A+A GA  +++ +  ++R
Sbjct:   22 VDVPKPGPGEVLIKILATSICGTDLHIYEWNEWAQTRIRPPQIMGHEVAGEVVEVGPGVEGIEVGDYVSVETHIVCGKCYACKRGQYHVCQNTKIFG-VDTDGVFAEYAVVPAQNVWKNPKNIPPEYATLQEPLGNAVDTVLAGPIAGK-SVLITGAGPLGLLGIAVAKASGAYPVIVSEPSEFR 204          
BLAST of FC868560 vs. ExPASy Swiss-Prot
Match: TDH_STRGG (L-threonine 3-dehydrogenase OS=Streptomyces griseus subsp. griseus (strain JCM 4626 / NBRC 13350) GN=tdh PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.127e-23
Identity = 70/200 (35.00%), Postives = 101/200 (50.50%), Query Frame = 1
Query:   97 WLMGVNTLKIQPLELPSLGPYDVLVRMKAVGVCGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLGARAFGAPRIVIVDVDDYRLSV 696
            WLM V          P  GP DVL+++   G+CG+D+H       A   V  P+++GHE  G +  +GS+V  +  GD V+ E  + C +C  C  GR +LC  + GLG     G  A  VV PA   +     V L+  A+ +P    VH      +  E +VLI G+GPIG++    AR  GA  +VI DV + RL++
Sbjct:   14 WLMDVPE--------PEYGPTDVLIKVLRTGICGTDLHIRAYDGWAQQAVTTPLILGHEFVGEVAAIGSDVADIATGDLVSGEGHLVCGKCRNCLAGRRHLCRSTVGLGVGR-DGAFAEYVVLPASNVWVHRVPVDLDIAAIFDPFGNAVHTALSFPLVGE-DVLITGAGPIGIMAAAVARHAGARNVVITDVSEARLAL 203          
BLAST of FC868560 vs. ExPASy Swiss-Prot
Match: TDH_PYRHO (Probable L-threonine 3-dehydrogenase OS=Pyrococcus horikoshii GN=tdh PE=1 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.127e-23
Identity = 60/185 (32.43%), Postives = 103/185 (55.68%), Query Frame = 1
Query:  133 LELPSLGPYDVLVRMKAVGVCGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLGARAFGAPRIVIVDVDDYR 687
            +++P  GP +VL+++ A  +CG+D+H  +    A   +K P ++GHE AG + ++G  V+ +  GD V++E  I C +C  C+ G+Y++C  +K  G     G  A   V PA   +K P ++  E   + EPL   V       I  + +VLI G+GP+GL+ +  A+A GA  +++ +  D+R
Sbjct:   22 VDVPKPGPGEVLIKVLATSICGTDLHIYEWNEWAQSRIKPPQIMGHEVAGEVVEIGPGVEGIEVGDYVSVETHIVCGKCYACRRGQYHVCQNTKIFG-VDTDGVFAEYAVVPAQNIWKNPKSIPPEYATLQEPLGNAVDTVLAGPISGK-SVLITGAGPLGLLGIAVAKASGAYPVIVSEPSDFR 204          
BLAST of FC868560 vs. ExPASy Swiss-Prot
Match: TDH_PYRAB (Probable L-threonine 3-dehydrogenase OS=Pyrococcus abyssi GN=tdh PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.127e-23
Identity = 61/185 (32.97%), Postives = 103/185 (55.68%), Query Frame = 1
Query:  133 LELPSLGPYDVLVRMKAVGVCGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLGARAFGAPRIVIVDVDDYR 687
            +++P  GP +VL+++ A  +CG+D+H  +    A   +K P ++GHE AG + +VG  V+ +  GD V++E  I C +C  C+ G+Y++C  +K  G     G  A   V PA   +K P ++  E   + EPL   V       I  + +VLI G+GP+GL+ +  A+A GA  +++ +  D+R
Sbjct:   22 VDVPKPGPGEVLIKVIATSICGTDLHIYEWNEWAQSRIKPPQIMGHEVAGEVVEVGPGVEGIEVGDYVSVETHIVCGKCYACRRGQYHVCQNTKIFG-VDTDGVFAEYAVVPAQNVWKNPKSIPPEYATLQEPLGNAVDTVLAGPISGK-SVLITGAGPLGLLGIAVAKASGAYPVIVSEPSDFR 204          
BLAST of FC868560 vs. ExPASy Swiss-Prot
Match: TDH_BACLD (L-threonine 3-dehydrogenase OS=Bacillus licheniformis (strain DSM 13 / ATCC 14580) GN=tdh PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.127e-23
Identity = 62/186 (33.33%), Postives = 101/186 (54.30%), Query Frame = 1
Query:  139 LPSLGPYDVLVRMKAVGVCGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLGARAFGAPRIVIVDVDDYRLSV 696
            +P +  ++VL+++KA  +CG+DVH       A   VK P V GHE +G + +VG  V T+  G+ V+ E  I C +C  C  G+ ++C ++  LG     GC A  V  PA   +K P  +  +  ++ EPL   VH      +     V ++G GPIGL+ +  A+A GA +++ +D ++YRL +
Sbjct:   24 IPKIDKHEVLIKVKAASICGTDVHIYNWDEWAKSRVKPPYVFGHEFSGEVVQVGENVTTVKEGEYVSAETHIVCGKCLPCLTGKEHVCKKTLILG-VDTDGCFAEYVKMPAANIWKNPAGMPEDLASIQEPLGNAVHTV-LTGMTAGVKVAVVGCGPIGLMAVAVAKASGAAQVIAIDKNEYRLDL 207          
BLAST of FC868560 vs. ExPASy Swiss-Prot
Match: TDH_PYRKO (Probable L-threonine 3-dehydrogenase OS=Pyrococcus kodakaraensis GN=tdh PE=1 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.922e-23
Identity = 60/185 (32.43%), Postives = 103/185 (55.68%), Query Frame = 1
Query:  133 LELPSLGPYDVLVRMKAVGVCGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLGARAFGAPRIVIVDVDDYR 687
            +++P  GP +VL+++ A  +CG+D+H  +    A   +K P ++GHE AG + +VG  V+ L  GD +++E  I C +C  CK  RY++C  +K  G   + G  A+  + PA   +K P ++  E  A+ EPL   V       I    + LI G+GP+GL+ +  A+A GA  +++ +  ++R
Sbjct:   22 VDVPKPGPGEVLIKVLATSICGTDLHIYEWNEWAQSRIKPPQIMGHEVAGEVVEVGPGVEDLQVGDYISVETHIVCGKCYACKHNRYHVCQNTKIFG-VDMDGVFAHYAIVPAKNAWKNPKDMPPEYAALQEPLGNAVDTVLAGPIAGR-STLITGAGPLGLLGIAVAKASGAYPVIVSEPSEFR 204          
BLAST of FC868560 vs. ExPASy Swiss-Prot
Match: YJMD_BACSU (Uncharacterized zinc-type alcohol dehydrogenase-like protein yjmD OS=Bacillus subtilis GN=yjmD PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.510e-23
Identity = 67/181 (37.02%), Postives = 99/181 (54.70%), Query Frame = 1
Query:  160 DVLVRMKAVGVCGSDVHFLK-TLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVH--GCLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLGARAFGAPRIVIVDVDDYRLS 693
            +VLV++K VG+CGSD+H    T  LA      P VIGHE  G +E VG+ V++L PGD V +EP   C  C  C+ GR N+C +    G   VH  G +   +V P      +  ++  EE  M EP ++G  A  R  +     VLI G+GPIG+  +  A+  GA  +++ D+++ RL+
Sbjct:   27 EVLVKVKRVGICGSDMHIYHGTNPLATL----PRVIGHEVTGQVEAVGANVQSLKPGDHVVIEPISYCGSCYACRKGRPNVCAKLSVFG---VHEDGGMREYIVLPERQLHAVSKDLPWEEAVMAEPYTIGAQAVWRGQVEKGDTVLIQGAGPIGICVLKMAKLAGA-AVMMTDLNNERLA 199          
The following BLAST results are available for this feature:
BLAST of FC868560 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 320
Match NameE-valueIdentityDescription
TDH_BACA21.738e-2432.46L-threonine 3-dehydrogenase OS=Bacillus amylolique... [more]
Y053_HAEIN6.606e-2432.99Uncharacterized zinc-type alcohol dehydrogenase-li... [more]
TDH_STRAW6.606e-2434.30L-threonine 3-dehydrogenase OS=Streptomyces avermi... [more]
TDH_PYRFU6.606e-2432.97Probable L-threonine 3-dehydrogenase OS=Pyrococcus... [more]
TDH_STRGG1.127e-2335.00L-threonine 3-dehydrogenase OS=Streptomyces griseu... [more]
TDH_PYRHO1.127e-2332.43Probable L-threonine 3-dehydrogenase OS=Pyrococcus... [more]
TDH_PYRAB1.127e-2332.97Probable L-threonine 3-dehydrogenase OS=Pyrococcus... [more]
TDH_BACLD1.127e-2333.33L-threonine 3-dehydrogenase OS=Bacillus lichenifor... [more]
TDH_PYRKO1.922e-2332.43Probable L-threonine 3-dehydrogenase OS=Pyrococcus... [more]
YJMD_BACSU2.510e-2337.02Uncharacterized zinc-type alcohol dehydrogenase-li... [more]

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Properties
Property NameValue
Genbank descriptionC31001H08EF AbioticL1 Citrus clementina cDNA clone C31001H08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868560 ID=FC868560; Name=FC868560; organism=Citrus clementina; type=EST; length=697bp
GGCACTTGTGTTTTTGAAGAGTGCAAAGCAAATATGGGCAAGGGAGGGAT
GTCACAAGGAGAAAAGGAAGATGGAGAAGAAGTTAACATGGCAGCTTGGC
TTATGGGTGTCAACACCCTCAAGATTCAGCCTTTGGAGCTTCCTTCTCTG
GGACCTTATGATGTTTTAGTCAGGATGAAAGCCGTTGGTGTTTGTGGAAG
TGATGTGCATTTTCTCAAGACCTTGAGGCTTGCCGATTTTGTAGTGAAAG
AGCCTATGGTGATCGGGCATGAGTGTGCTGGGGTCATAGAGAAGGTGGGA
AGCGAGGTGAAGACTTTGGTGCCCGGTGACCGTGTGGCCCTGGAACCAGG
GATCAGCTGCTGGCAATGTGATTACTGCAAAGGAGGTCGATACAATTTGT
GTCCAGAGTCGAAAGGTCTTGGAAGTCCGCCAGTTCATGGTTGTCTGGCT
AATCAGGTGGTGCATCCTGCAGACCTATGTTTTAAGCTGCCCGACAATGT
CAGCCTGGAGGAAGGGGCTATGTGTGAGCCCTTGAGTGTTGGTGTTCATG
CCTGCCGCCGTGCCAATATCGGTCCTGAGACAAATGTGCTTATCATGGGA
TCAGGGCCCATAGGACTTGTCACAATGCTAGGAGCTCGTGCTTTTGGAGC
TCCTAGAATTGTCATTGTGGATGTGGATGACTATCGTTTATCTGTTG
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