FC868588

Overview
NameFC868588
Unique NameFC868588
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length722
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868588 vs. ExPASy Swiss-Prot
Match: NDRG1_XENTR (Protein NDRG1 OS=Xenopus tropicalis GN=ndrg1 PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 6.102e-20
Identity = 57/182 (31.32%), Postives = 99/182 (54.40%), Query Frame = 2
Query:  131 IKTSHGSLSVTIYGDQ--DKPALVTYPDLALNYMSCFQGLFFCPEACSLLLHNFCIYHINPPGHEFGAAAISDDEPVLSVDDLADQIAEVLNHFGLGAVMCMGVTAGAYILTLFAMKYRHRVLGLILVSPLCKAPSWTEWLYNKVMSNLLYYYGMCGVVKELLLKRYFSR-XVRGNAQVPES 667
            I+T+HG + VT+ G    ++P ++TY D+ LN+ +CF  LF   +   +  H F + H++ PG + GAA+        S+D LA+ +  V+   GL +V+ +G+ AGAYILT FA+ +   V GL+L++    A  W +W   K+        G    + ++++   FS+  V  N ++ E+
Sbjct:   37 IETAHGIVHVTMCGTPKLNRPVILTYHDIGLNHKTCFNSLFNFEDMHEITQH-FSVCHVDAPGQQEGAASFPAGYMYPSMDQLAEMLPGVIQQLGLKSVLGLGIGAGAYILTRFALNHPSMVEGLVLININPCAEGWMDWAATKIS-------GWTHALPDMVISHLFSKDEVHSNHELVET 210          
BLAST of FC868588 vs. ExPASy Swiss-Prot
Match: NDRG1_MACFA (Protein NDRG1 OS=Macaca fascicularis GN=Ndrg1 PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 6.102e-20
Identity = 52/145 (35.86%), Postives = 84/145 (57.93%), Query Frame = 2
Query:  131 IKTSHGSLSVTIYGDQ--DKPALVTYPDLALNYMSCFQGLFFCPEACSLLLHNFCIYHINPPGHEFGAAAISDDEPVLSVDDLADQIAEVLNHFGLGAVMCMGVTAGAYILTLFAMKYRHRVLGLILVSPLCKAPSWTEWLYNKV 559
            I+T HGS+ VT+ G    ++P ++TY D+ +N+ +C+  LF   +   +  H F + H++ PG + GAA+        S+D LA+ +  VL  FGL +++ MG  AGAYILT FA+     V GL+L++    A  W +W  +K+
Sbjct:   37 IETLHGSVHVTLCGTPKGNRPVILTYHDIGMNHKTCYNPLFNYEDMQEITQH-FAVCHVDAPGQQDGAASFPAGYMYPSMDQLAEMLPGVLQQFGLKSIIGMGTGAGAYILTRFALNNPEMVEGLVLINVNPCAEGWMDWAASKI 180          
BLAST of FC868588 vs. ExPASy Swiss-Prot
Match: NDRG1_HUMAN (Protein NDRG1 OS=Homo sapiens GN=NDRG1 PE=1 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 6.102e-20
Identity = 52/145 (35.86%), Postives = 84/145 (57.93%), Query Frame = 2
Query:  131 IKTSHGSLSVTIYGDQ--DKPALVTYPDLALNYMSCFQGLFFCPEACSLLLHNFCIYHINPPGHEFGAAAISDDEPVLSVDDLADQIAEVLNHFGLGAVMCMGVTAGAYILTLFAMKYRHRVLGLILVSPLCKAPSWTEWLYNKV 559
            I+T HGS+ VT+ G    ++P ++TY D+ +N+ +C+  LF   +   +  H F + H++ PG + GAA+        S+D LA+ +  VL  FGL +++ MG  AGAYILT FA+     V GL+L++    A  W +W  +K+
Sbjct:   37 IETLHGSVHVTLCGTPKGNRPVILTYHDIGMNHKTCYNPLFNYEDMQEITQH-FAVCHVDAPGQQDGAASFPAGYMYPSMDQLAEMLPGVLQQFGLKSIIGMGTGAGAYILTRFALNNPEMVEGLVLINVNPCAEGWMDWAASKI 180          
BLAST of FC868588 vs. ExPASy Swiss-Prot
Match: NDRG3_BOVIN (Protein NDRG3 OS=Bos taurus GN=NDRG3 PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 7.969e-20
Identity = 55/170 (32.35%), Postives = 95/170 (55.88%), Query Frame = 2
Query:  131 IKTSHGSLSVTIYG--DQDKPALVTYPDLALNYMSCFQGLFFCPEACSLLLHNFCIYHINPPGHEFGAAAISDDEPVLSVDDLADQIAEVLNHFGLGAVMCMGVTAGAYILTLFAMKYRHRVLGLILVSPLCKAPSWTEWLYNKVMSNLLYYYGMCGVVKELLLKRYFSR 634
            I+T+HG + VTI G    ++P ++TY D+ LN+ SCF   FF  E    +  +F + H++ PG + GA +        ++D+LA+ +  VL H  L +++ +GV AGAYIL+ FA+ +   V GL+L++    A  W +W  +K+        G+   V +++L  +F +
Sbjct:   35 IETAHGMVHVTIRGLPKGNRPVILTYHDIGLNHKSCFNA-FFNFEDMQEITQHFAVCHVDAPGQQEGAPSFPTGYQYPTMDELAEMLPPVLTHLNLKSIIGIGVGAGAYILSRFALNHPELVEGLVLINVDPCAKGWIDWAASKLS-------GLTTNVVDIILSHHFGQ 196          
BLAST of FC868588 vs. ExPASy Swiss-Prot
Match: NDR1B_XENLA (Protein NDRG1-B OS=Xenopus laevis GN=ndrg1-B PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 7.969e-20
Identity = 56/182 (30.77%), Postives = 99/182 (54.40%), Query Frame = 2
Query:  131 IKTSHGSLSVTIYGDQ--DKPALVTYPDLALNYMSCFQGLFFCPEACSLLLHNFCIYHINPPGHEFGAAAISDDEPVLSVDDLADQIAEVLNHFGLGAVMCMGVTAGAYILTLFAMKYRHRVLGLILVSPLCKAPSWTEWLYNKVMSNLLYYYGMCGVVKELLLKRYFSR-XVRGNAQVPES 667
            I+T+HG + VT+ G    ++P ++TY D+ LN+ +CF  LF   +   +  H F + H++ PG + GAA+        S+D LA+ +  V+   GL +++ +G+ +GAYILT FA+ +   V GL+L++    A  W +W   K+        G    + E+++   FS+  V  N ++ E+
Sbjct:   38 IETAHGIVHVTMCGTPKLNRPVILTYHDIGLNHKTCFNSLFNFEDMHEITQH-FSVCHVDAPGQQEGAASFPAGYMYPSMDQLAEMLPGVVQQLGLKSIIGLGIGSGAYILTRFALNHPSMVEGLVLININPCAEGWMDWAATKIS-------GWAHALPEMVISHLFSKDEVHSNPELVET 211          
BLAST of FC868588 vs. ExPASy Swiss-Prot
Match: NDRG3_PONAB (Protein NDRG3 OS=Pongo abelii GN=NDRG3 PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.041e-19
Identity = 55/170 (32.35%), Postives = 95/170 (55.88%), Query Frame = 2
Query:  131 IKTSHGSLSVTIYG--DQDKPALVTYPDLALNYMSCFQGLFFCPEACSLLLHNFCIYHINPPGHEFGAAAISDDEPVLSVDDLADQIAEVLNHFGLGAVMCMGVTAGAYILTLFAMKYRHRVLGLILVSPLCKAPSWTEWLYNKVMSNLLYYYGMCGVVKELLLKRYFSR 634
            I+T+HG + VTI G    ++P ++TY D+ LN+ SCF   FF  E    +  +F + H++ PG + GA +        ++D+LA+ +  VL H  L +++ +GV AGAYIL+ FA+ +   V GL+L++    A  W +W  +K+        G+   V +++L  +F +
Sbjct:   35 IETTHGMVHVTIRGLPKGNRPVILTYHDIGLNHKSCFNA-FFNFEDMQEITQHFAVCHVDAPGQQEGAPSFPTGYQYPTMDELAEMLPPVLTHLSLKSIIGIGVGAGAYILSRFALNHPELVEGLVLINVDPCAKGWIDWAASKLS-------GLTTNVVDIILAHHFGQ 196          
BLAST of FC868588 vs. ExPASy Swiss-Prot
Match: NDRG1_MOUSE (Protein NDRG1 OS=Mus musculus GN=Ndrg1 PE=1 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.041e-19
Identity = 53/145 (36.55%), Postives = 84/145 (57.93%), Query Frame = 2
Query:  131 IKTSHGSLSVTIYGDQ--DKPALVTYPDLALNYMSCFQGLFFCPEACSLLLHNFCIYHINPPGHEFGAAAISDDEPVLSVDDLADQIAEVLNHFGLGAVMCMGVTAGAYILTLFAMKYRHRVLGLILVSPLCKAPSWTEWLYNKV 559
            I+T HGSL VT+ G    ++P ++TY D+ +N+ +C+  LF   +   +  H F + H++ PG + GA +        S+D LA+ +  VL+ FGL +V+ MG  AGAYILT FA+     V GL+L++    A  W +W  +K+
Sbjct:   37 IETLHGSLHVTLCGTPKGNRPVILTYHDIGMNHKTCYNPLFNSEDMQEITQH-FAVCHVDAPGQQDGAPSFPVGYMYPSMDQLAEMLPGVLHQFGLKSVIGMGTGAGAYILTRFALNNPEMVEGLVLMNVNPCAEGWMDWAASKI 180          
BLAST of FC868588 vs. ExPASy Swiss-Prot
Match: NDRG3_HUMAN (Protein NDRG3 OS=Homo sapiens GN=NDRG3 PE=1 SV=2)

HSP 1 Score: 96.6709 bits (239), Expect = 1.359e-19
Identity = 55/170 (32.35%), Postives = 95/170 (55.88%), Query Frame = 2
Query:  131 IKTSHGSLSVTIYG--DQDKPALVTYPDLALNYMSCFQGLFFCPEACSLLLHNFCIYHINPPGHEFGAAAISDDEPVLSVDDLADQIAEVLNHFGLGAVMCMGVTAGAYILTLFAMKYRHRVLGLILVSPLCKAPSWTEWLYNKVMSNLLYYYGMCGVVKELLLKRYFSR 634
            I+T+HG + VTI G    ++P ++TY D+ LN+ SCF   FF  E    +  +F + H++ PG + GA +        ++D+LA+ +  VL H  L +++ +GV AGAYIL+ FA+ +   V GL+L++    A  W +W  +K+        G+   V +++L  +F +
Sbjct:   35 IETTHGVVHVTIRGLPKGNRPVILTYHDIGLNHKSCFNA-FFNFEDMQEITQHFAVCHVDAPGQQEGAPSFPTGYQYPTMDELAEMLPPVLTHLSLKSIIGIGVGAGAYILSRFALNHPELVEGLVLINVDPCAKGWIDWAASKLS-------GLTTNVVDIILAHHFGQ 196          
BLAST of FC868588 vs. ExPASy Swiss-Prot
Match: NDRG1_RAT (Protein NDRG1 OS=Rattus norvegicus GN=Ndrg1 PE=1 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.359e-19
Identity = 53/145 (36.55%), Postives = 84/145 (57.93%), Query Frame = 2
Query:  131 IKTSHGSLSVTIYGDQ--DKPALVTYPDLALNYMSCFQGLFFCPEACSLLLHNFCIYHINPPGHEFGAAAISDDEPVLSVDDLADQIAEVLNHFGLGAVMCMGVTAGAYILTLFAMKYRHRVLGLILVSPLCKAPSWTEWLYNKV 559
            I+T HGSL VT+ G    ++P ++TY D+ +N+ +C+  LF   +   +  H F + H++ PG + GA +        S+D LA+ +  VL+ FGL +V+ MG  AGAYILT FA+     V GL+L++    A  W +W  +K+
Sbjct:   37 IETLHGSLHVTLCGTPKGNRPVILTYHDIGMNHKTCYNPLFNSEDMQEITQH-FAVCHVDAPGQQDGAPSFPVGYMYPSMDQLAEMLPGVLHKFGLKSVIGMGTGAGAYILTRFALNNPEMVEGLVLMNVNPCAEGWMDWAASKI 180          
BLAST of FC868588 vs. ExPASy Swiss-Prot
Match: NDR4A_XENLA (Protein NDRG4-A OS=Xenopus laevis GN=ndrg4-A PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.359e-19
Identity = 55/192 (28.65%), Postives = 97/192 (50.52%), Query Frame = 2
Query:   65 DSSSDSVSIDMETPPPSGKDNLIKTSHGSLSVTIYGDQ--DKPALVTYPDLALNYMSCFQGLFFCPEACSLLLHNFCIYHINPPGHEFGAAAISDDEPVLSVDDLADQIAEVLNHFGLGAVMCMGVTAGAYILTLFAMKYRHRVLGLILVSPLCKAPSWTEWLYNKVMSNLLYYYGMCGVVKELLLKRYFSR 634
            D+  +S    +       K++ I+T +G L V I G    ++PA++TY D+ LN+  CF   FF  E    +  +F + H++ PG + GA+         ++D LA  +  V+ HFG  +++ +GV AGAY+L  FA+ +   V G++L++       W +W  +K+        G+   + E +L   FS+
Sbjct:   40 DTEMESADTFLSAADTDWKEHDIETPYGMLHVVIRGTPKGNRPAILTYHDVGLNHKLCFN-TFFNYEDMQEITKHFVVCHVDAPGQQVGASQFPQGYQYPTMDQLAAMLPSVMQHFGFQSIIAIGVGAGAYVLAKFALIFPELVEGMVLINIDPNGKGWIDWAASKIS-------GLASSLPETVLSHLFSQ 223          
The following BLAST results are available for this feature:
BLAST of FC868588 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 33
Match NameE-valueIdentityDescription
NDRG1_XENTR6.102e-2031.32Protein NDRG1 OS=Xenopus tropicalis GN=ndrg1 PE=2 ... [more]
NDRG1_MACFA6.102e-2035.86Protein NDRG1 OS=Macaca fascicularis GN=Ndrg1 PE=2... [more]
NDRG1_HUMAN6.102e-2035.86Protein NDRG1 OS=Homo sapiens GN=NDRG1 PE=1 SV=1[more]
NDRG3_BOVIN7.969e-2032.35Protein NDRG3 OS=Bos taurus GN=NDRG3 PE=2 SV=1[more]
NDR1B_XENLA7.969e-2030.77Protein NDRG1-B OS=Xenopus laevis GN=ndrg1-B PE=2 ... [more]
NDRG3_PONAB1.041e-1932.35Protein NDRG3 OS=Pongo abelii GN=NDRG3 PE=2 SV=1[more]
NDRG1_MOUSE1.041e-1936.55Protein NDRG1 OS=Mus musculus GN=Ndrg1 PE=1 SV=1[more]
NDRG3_HUMAN1.359e-1932.35Protein NDRG3 OS=Homo sapiens GN=NDRG3 PE=1 SV=2[more]
NDRG1_RAT1.359e-1936.55Protein NDRG1 OS=Rattus norvegicus GN=Ndrg1 PE=1 S... [more]
NDR4A_XENLA1.359e-1928.65Protein NDRG4-A OS=Xenopus laevis GN=ndrg4-A PE=2 ... [more]

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Properties
Property NameValue
Genbank descriptionC31002C07EF AbioticL1 Citrus clementina cDNA clone C31002C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868588 ID=FC868588; Name=FC868588; organism=Citrus clementina; type=EST; length=722bp
GAATGAGGCTTTGAATTGAGAATCAGTAGAGAGAGAAGAGAGAGAGAGAG
AGAGAAAGATGGCAGATTCTTCAAGCGATTCGGTTTCCATTGATATGGAG
ACTCCTCCTCCTAGTGGCAAGGACAATCTTATAAAAACTTCCCATGGTTC
TTTGTCTGTTACCATCTATGGGGACCAGGACAAGCCAGCTCTTGTCACTT
ATCCTGATTTAGCTCTAAACTATATGTCCTGCTTTCAAGGATTATTCTTC
TGCCCAGAAGCATGTTCCTTGCTACTGCACAACTTTTGCATATATCATAT
AAATCCTCCTGGCCACGAGTTTGGAGCTGCGGCAATTAGTGATGATGAAC
CTGTACTCTCTGTTGATGATTTAGCGGATCAAATCGCTGAGGTTCTTAAC
CATTTTGGACTTGGTGCAGTGATGTGTATGGGGGTTACAGCTGGAGCTTA
CATTCTTACACTATTTGCTATGAAATATAGGCACCGTGTACTTGGGTTAA
TCCTAGTTTCTCCTCTGTGCAAAGCACCCTCTTGGACAGAATGGTTGTAT
AATAAGGTAATGTCAAATTTACTCTACTACTATGGCATGTGTGGGGTGGT
GAAGGAATTATTGCTAAAGCGGTACTTCAGCAGGNAAGTTCGTGGTAATG
CCCAAGTACCAGAATCTGATATAGTTCAGGCATGCAGAAGACTGCTGGAT
GAAAGACAGAGCTCAATGTTGG
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