FC868595

Overview
NameFC868595
Unique NameFC868595
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length679
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868595 vs. ExPASy Swiss-Prot
Match: ATXB_LEIDO (Probable proton ATPase 1B OS=Leishmania donovani GN=H1B PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.093e-11
Identity = 48/182 (26.37%), Postives = 90/182 (49.45%), Query Frame = 2
Query:   20 MSLIIAILNDGTIMTISKDRVKPSTQPDSWKLKEIFATGVVLGSYLAIMTVVFFWLMRK---TDFFSDAFGVR-SLRTRPD-EMMAALYLQVSIISQALIFVTRSRS-WSFIERPGLLLATAFVIAQLVATFIAVYANWSFAR-----IEGCGWGWAGV-------IWLYSLVTYFPLDILK 511
            M ++I +LNDG +MTI  D V PS +P  W L  +F +  +L +     +++  W+  +   + ++ +++  R  L   P  +++  +YL++SI     +F +R+   + F   P  +L    +I+ LV+T  A +  W  +R      EG  WG           +W+Y +V +F  D++K
Sbjct:  705 MFMLITLLNDGCLMTIGYDHVIPSERPQKWNLPVVFVSASILAAVACGSSLMLLWIGLEGYSSQYYENSWFHRLGLAQLPQGKLVTMMYLKISISDFLTLFSSRTGGHFFFYVPPSPILFCGAIISLLVSTMAASF--WHKSRPDNVLTEGLAWGQTNAEKLLPLWVWIYCIVWWFVQDVVK 884          
BLAST of FC868595 vs. ExPASy Swiss-Prot
Match: ATXA_LEIDO (Probable proton ATPase 1A OS=Leishmania donovani GN=H1A PE=2 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 2.093e-11
Identity = 48/182 (26.37%), Postives = 90/182 (49.45%), Query Frame = 2
Query:   20 MSLIIAILNDGTIMTISKDRVKPSTQPDSWKLKEIFATGVVLGSYLAIMTVVFFWLMRK---TDFFSDAFGVR-SLRTRPD-EMMAALYLQVSIISQALIFVTRSRS-WSFIERPGLLLATAFVIAQLVATFIAVYANWSFAR-----IEGCGWGWAGV-------IWLYSLVTYFPLDILK 511
            M ++I +LNDG +MTI  D V PS +P  W L  +F +  +L +     +++  W+  +   + ++ +++  R  L   P  +++  +YL++SI     +F +R+   + F   P  +L    +I+ LV+T  A +  W  +R      EG  WG           +W+Y +V +F  D++K
Sbjct:  705 MFMLITLLNDGCLMTIGYDHVIPSERPQKWNLPVVFVSASILAAVACGSSLMLLWIGLEGYSSQYYENSWFHRLGLAQLPQGKLVTMMYLKISISDFLTLFSSRTGGHFFFYMPPSPILFCGAIISLLVSTMAASF--WHKSRPDNVLTEGLAWGQTNAEKLLPLWVWIYCIVWWFVQDVVK 884          
The following BLAST results are available for this feature:
BLAST of FC868595 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
ATXB_LEIDO2.093e-1126.37Probable proton ATPase 1B OS=Leishmania donovani G... [more]
ATXA_LEIDO2.093e-1126.37Probable proton ATPase 1A OS=Leishmania donovani G... [more]

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Properties
Property NameValue
Genbank descriptionC31002D06EF AbioticL1 Citrus clementina cDNA clone C31002D06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868595 ID=FC868595; Name=FC868595; organism=Citrus clementina; type=EST; length=679bp
GTTAGACTTTTCTCCATTCATGTCTCTGATTATTGCCATTTTAAATGACG
GAACAATCATGACAATTTCAAAGGATCGTGTTAAGCCGTCCACTCAACCA
GACAGCTGGAAACTAAAAGAGATTTTTGCCACTGGCGTTGTGCTTGGAAG
TTACTTGGCCATCATGACTGTTGTATTCTTCTGGCTAATGAGGAAGACTG
ACTTTTTCTCGGACGCGTTTGGTGTAAGATCATTAAGAACTAGACCCGAT
GAGATGATGGCCGCTTTATACTTGCAAGTCAGTATTATTAGCCAGGCCCT
TATTTTTGTCACGAGGTCCCGCAGCTGGTCCTTTATTGAACGCCCTGGAC
TTCTCTTAGCCACGGCATTTGTGATTGCTCAGCTTGTAGCAACTTTCATA
GCGGTCTATGCAAATTGGAGTTTTGCACGGATAGAGGGTTGTGGCTGGGG
CTGGGCCGGGGTAATCTGGCTTTACAGTCTGGTAACATATTTTCCTCTTG
ACATACTCAAGTTCGGAATCCGCTACATCCTCAGTGGAAAGGCTTGGGAT
ACTCTTCTGGAGAACAAGACTGCCTTCACTACCAAGAAAGACTACGGTAA
AGAAGAGAGAGAGGCACAATGGGCAGCCGCACAAAGGACCTTGCACGGTC
TTCAACCACCCGAAACAACCGCATTTTCT
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