FC868653

Overview
NameFC868653
Unique NameFC868653
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length713
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868653 vs. ExPASy Swiss-Prot
Match: GLGA_GRABC (Glycogen synthase OS=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) GN=glgA PE=3 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 6.335e-38
Identity = 84/217 (38.71%), Postives = 134/217 (61.75%), Query Frame = 2
Query:   20 KINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTG--IKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVAEGFT 664
            +I  +KAG+  +D + TVSP YA+E+ + +  G+ L  ++R     + G++NG+D+ EWNP  D ++   +D  + ++ + + +EAL+   GL      P+ G + RL  QKG D++  A+P  I +  Q++VLG+G K +E+ L Q    +P +    + ++  L+  I +GAD +LIPSRFEPCGL QL+AMRYG VPIV+  GGL DT+ +  T
Sbjct:  197 QIGLLKAGLHYADALTTVSPSYAREIQT-DTGGMGLGGLLRDRAAVLNGLLNGIDMTEWNPAHDPHVKAHFDRHS-LEHRTINREALRTRFGLDSSAG-PLFGIVSRLTGQKGIDLVLNALPFLISQQAQLVVLGSGDKGLEQGLLQAAQTHPRQIAVFSGYDEALSRQIFSGADAMLIPSRFEPCGLTQLYAMRYGAVPIVSRVGGLADTIIDANT 410          
BLAST of FC868653 vs. ExPASy Swiss-Prot
Match: GLGA_ACIBL (Glycogen synthase OS=Acidobacteria bacterium (strain Ellin345) GN=glgA PE=3 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 6.335e-38
Identity = 86/212 (40.57%), Postives = 131/212 (61.79%), Query Frame = 2
Query:   20 KINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIR-KTG-IKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTV 649
            K+N++K  ++ +D V TVS  YA E+ + E  G  L+ ++R ++G + GI+NG+D  EW+P TD++I  K+ A ++  AK   K  L  E GLP +  +PV+G + R   QKG D++        +E    +VLG+G K  E  + +L   YP +      ++  LAH I AG+D  L+PSR+EPCGL Q++++RYGTVPIV +TGGL DT+
Sbjct:  199 KVNFLKGALVYADFVTTVSRRYALEIQTAE-YGFGLEGVLRGRSGTVAGILNGVDYSEWSPETDRFIAAKFSADSLA-AKAQDKADLLREFGLP-ETKLPVVGIVSRFAAQKGFDLIQQVGDRLAREEAIFVVLGSGDKTYEDLMRRLSKQYPNRFAVRVAYDNALAHKIEAGSDMFLMPSRYEPCGLNQIYSLRYGTVPIVRATGGLDDTI 407          
BLAST of FC868653 vs. ExPASy Swiss-Prot
Match: GLGA_PROM4 (Glycogen synthase OS=Prochlorococcus marinus (strain MIT 9211) GN=glgA PE=3 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 8.273e-38
Identity = 89/220 (40.45%), Postives = 134/220 (60.91%), Query Frame = 2
Query:   32 MKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTG--IKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIK-ENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVAEGFTGFQMGS 682
            M   +L +D V  VSP YA+E+ + E  G +LD ++      ++GI+NG+D+ +WNP TDK +   + AS ++  +   K ALQ+++GL V  N  ++G +GRL +QKG D+L       +   + QI+VLGTG+  +E  L QL   YP +      ++  L+ +I AG D  L+PSRFEPCG+ QL AMRYG++P+V + GGLVDTV+      Q G+
Sbjct:  180 MAVAMLYADRVNAVSPTYAKEICTSE-YGEKLDGLLNYISGKLRGILNGIDLDDWNPETDKALPANFSASNILGRRKN-KAALQSQMGLDVKPNSYLLGMVGRLVDQKGVDLLLQVARRLLAYTDSQIVVLGTGESALESALWQLATEYPGRFAVFLTYDDYLSRLIYAGTDAFLMPSRFEPCGISQLLAMRYGSIPVVRNVGGLVDTVSPHDPSKQTGT 397          
BLAST of FC868653 vs. ExPASy Swiss-Prot
Match: GLGA_GLOVI (Glycogen synthase OS=Gloeobacter violaceus GN=glgA PE=3 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 8.273e-38
Identity = 88/211 (41.71%), Postives = 130/211 (61.61%), Query Frame = 2
Query:   26 NWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTG--IKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKEN-VQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTV 649
            N M AGI+ SD +  VSP YA+E+ + E  G  LD ++R  G  + GI+NG++ +  +P TDK++ V YD +T +D +   K ALQ E G  V  +  ++G + RL +QKG D+LA    +++  +  Q++VLG+G    E         YP++ + V  +N+P+A  I  GAD  L+PSRFEPCG+ Q+ A+RYG VP+V  TGGL DTV
Sbjct:  177 NPMVAGIIHSDAITAVSPTYAREICTPE-YGERLDGLLRGQGNRLTGILNGINTKALDPATDKHLTVNYD-TTSLDRRVENKLALQREFGFEVSADRLLVGIVSRLVDQKGFDLLAPLWDNWMHTSGAQLVVLGSGDPFYEFLFRSAAERYPDRIKAVLSYNVPIAQRIYGGADLFLMPSRFEPCGIGQMIALRYGAVPLVRKTGGLADTV 385          
BLAST of FC868653 vs. ExPASy Swiss-Prot
Match: GLGA2_AGRT5 (Glycogen synthase 2 OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=glgA2 PE=3 SV=2)

HSP 1 Score: 157.147 bits (396), Expect = 8.273e-38
Identity = 89/213 (41.78%), Postives = 131/213 (61.50%), Query Frame = 2
Query:   23 INWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNII--RKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVAE 655
            ++++K G+  +  V TVSP YA+E+++ E  G+ +  ++  R+  ++GIVNG+D   WNP TD YI   + A+T    + L K AL   +GL   +  PV G + RL  QKG D+L   +P  I+   ++IV G G   +E  L+ L   YPE       ++  LAHMI AG+DFI+ PSRFEPCGL QL+A+RYG +PIV+ TGGL +T+ +
Sbjct:  194 MSFLKGGLTTASAVTTVSPTYAREILTPE-MGMGMHGVLARRRGDLRGIVNGVDHDVWNPATDPYILANFTAATAT-RRSLNKYALLQALGLAPTQG-PVFGVVSRLTWQKGIDLLPHVVPLIIERKGRLIVHGEGDTALEDSLQALAKRYPELVCAHIGYDERLAHMIQAGSDFIIQPSRFEPCGLTQLYALRYGALPIVSRTGGLAETIID 403          
BLAST of FC868653 vs. ExPASy Swiss-Prot
Match: GLGA_SYNE7 (Glycogen synthase OS=Synechococcus elongatus (strain PCC 7942) GN=glgA PE=3 SV=3)

HSP 1 Score: 156.762 bits (395), Expect = 1.081e-37
Identity = 92/209 (44.02%), Postives = 130/209 (62.20%), Query Frame = 2
Query:   32 MKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTG--IKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIK-ENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTV 649
            M A +L +D V TVSP YAQ++ +    G +L+ ++      + GI+NG+DV  +NP TD  I   YD  T +D +   K ALQ E+GL V+ +  +IGF+ RL EQKG D+L   +  F+   + Q +VLGTG++  E QL +L   YP +      ++  L+  I AG+D  L+PSRFEPCG+ Q+ A+RYG+VPIV  TGGLVDTV
Sbjct:  180 MAAALLYADRVNTVSPTYAQQIQT-PTYGEKLEGLLSFISGKLSGILNGIDVDSYNPATDTRIVANYDRDT-LDKRLNNKLALQKEMGLEVNPDRFLIGFVARLVEQKGIDLLLQILDRFLSYSDAQFVVLGTGERYYETQLWELATRYPGRMSTYLMYDEGLSRRIYAGSDAFLVPSRFEPCGITQMLALRYGSVPIVRRTGGLVDTV 386          
BLAST of FC868653 vs. ExPASy Swiss-Prot
Match: GLGA_DESVV (Glycogen synthase OS=Desulfovibrio vulgaris subsp. vulgaris (strain DP4) GN=glgA PE=3 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 1.081e-37
Identity = 92/225 (40.89%), Postives = 131/225 (58.22%), Query Frame = 2
Query:   26 NWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTG--IKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGL-PVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTV----AEGFTGFQMG 679
            N +KAGI  +D V TVSP YA+E++ G   G  LD I+RK    + GI+NG D   W+P  D+++  +Y   T +  K   K AL  E+GL P     P++GFIGRL  QKG D+L   +P  ++ +V +I+LG G    E +  +L   Y  +   +  +   LAH I AG+D  L+PSR+EPCGL Q++A+RYGT P+  + GGL DT+    +   TGF  G
Sbjct:  205 NLLKAGIAYADKVTTVSPSYAREIL-GPAYGSGLDGILRKRAHALHGILNGADYDIWSPGNDRFLPCRY-TPTDLAGKAQCKRALIEELGLDPHLARRPILGFIGRLRGQKGIDLLLDILPRLMESDVGVIILGEGNLTHEARALELMEAYRGRVCTIVSYTEDLAHRIQAGSDIFLMPSRYEPCGLTQMYALRYGTPPVATAVGGLRDTIVPWPSPESTGFTFG 427          
BLAST of FC868653 vs. ExPASy Swiss-Prot
Match: GLGA_DESVH (Glycogen synthase OS=Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303) GN=glgA PE=3 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 1.081e-37
Identity = 92/225 (40.89%), Postives = 131/225 (58.22%), Query Frame = 2
Query:   26 NWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTG--IKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGL-PVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTV----AEGFTGFQMG 679
            N +KAGI  +D V TVSP YA+E++ G   G  LD I+RK    + GI+NG D   W+P  D+++  +Y   T +  K   K AL  E+GL P     P++GFIGRL  QKG D+L   +P  ++ +V +I+LG G    E +  +L   Y  +   +  +   LAH I AG+D  L+PSR+EPCGL Q++A+RYGT P+  + GGL DT+    +   TGF  G
Sbjct:  205 NLLKAGIAYADKVTTVSPSYAREIL-GPAYGSGLDGILRKRAHALHGILNGADYDIWSPGNDRFLPCRY-TPTDLAGKAQCKRALIEELGLDPHLARRPILGFIGRLRGQKGIDLLLDILPRLMESDVGVIILGEGNLTHEARALELMEAYRGRVCTIVSYTEDLAHRIQAGSDIFLMPSRYEPCGLTQMYALRYGTPPVATAVGGLRDTIVPWPSPESTGFTFG 427          
BLAST of FC868653 vs. ExPASy Swiss-Prot
Match: GLGA_FRATW (Glycogen synthase OS=Francisella tularensis subsp. tularensis (strain WY96-3418) GN=glgA PE=3 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 1.411e-37
Identity = 90/236 (38.14%), Postives = 132/236 (55.93%), Query Frame = 2
Query:   20 KINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNII--RKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVAEG---------FTGFQMGSFSVD 694
            ++++MKAG+  +D + TVSP YA+E+   E +G  L+ ++  R   + G++NG+D Q WNP  D  I   Y ++TV   K   K ALQ  +GL    +  + G + RL EQKG ++L  AI        QI++LG+G K +E+        Y +       ++   AH IIAG+D I++PSRFEPCGL QL+ + YGT+P+V   GGL DTV +           TGF    FSV+
Sbjct:  203 QVSFMKAGLYFADKITTVSPTYAKEIQIYE-QGCGLEGLLADRHNDLYGVLNGVDPQIWNPKKDSLIATNYSSTTVATGKAKCKLALQQMMGLAEKEDALLFGIVTRLTEQKGLNLLIEAIGEITSRGGQIVLLGSGDKALEEVFLAAAKKYSKSIAVQIGYDEEQAHRIIAGSDVIMVPSRFEPCGLTQLYGLTYGTLPLVHKVGGLADTVIDSSLENLADGTATGFVFDEFSVE 437          
BLAST of FC868653 vs. ExPASy Swiss-Prot
Match: GLGA_FRATT (Glycogen synthase OS=Francisella tularensis subsp. tularensis GN=glgA PE=3 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 1.411e-37
Identity = 90/236 (38.14%), Postives = 132/236 (55.93%), Query Frame = 2
Query:   20 KINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNII--RKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVAEG---------FTGFQMGSFSVD 694
            ++++MKAG+  +D + TVSP YA+E+   E +G  L+ ++  R   + G++NG+D Q WNP  D  I   Y ++TV   K   K ALQ  +GL    +  + G + RL EQKG ++L  AI        QI++LG+G K +E+        Y +       ++   AH IIAG+D I++PSRFEPCGL QL+ + YGT+P+V   GGL DTV +           TGF    FSV+
Sbjct:  203 QVSFMKAGLYFADKITTVSPTYAKEIQIYE-QGCGLEGLLADRHNDLYGVLNGVDPQIWNPKKDSLIATNYSSTTVATGKAKCKLALQQMMGLAEKEDALLFGIVTRLTEQKGLNLLIEAIGEITSRGGQIVLLGSGDKALEEVFLAAAKKYSKSIAVQIGYDEEQAHRIIAGSDVIMVPSRFEPCGLTQLYGLTYGTLPLVHKVGGLADTVIDSSLENLADGTATGFVFDEFSVE 437          
The following BLAST results are available for this feature:
BLAST of FC868653 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 364
Match NameE-valueIdentityDescription
GLGA_GRABC6.335e-3838.71Glycogen synthase OS=Granulibacter bethesdensis (s... [more]
GLGA_ACIBL6.335e-3840.57Glycogen synthase OS=Acidobacteria bacterium (stra... [more]
GLGA_PROM48.273e-3840.45Glycogen synthase OS=Prochlorococcus marinus (stra... [more]
GLGA_GLOVI8.273e-3841.71Glycogen synthase OS=Gloeobacter violaceus GN=glgA... [more]
GLGA2_AGRT58.273e-3841.78Glycogen synthase 2 OS=Agrobacterium tumefaciens (... [more]
GLGA_SYNE71.081e-3744.02Glycogen synthase OS=Synechococcus elongatus (stra... [more]
GLGA_DESVV1.081e-3740.89Glycogen synthase OS=Desulfovibrio vulgaris subsp.... [more]
GLGA_DESVH1.081e-3740.89Glycogen synthase OS=Desulfovibrio vulgaris (strai... [more]
GLGA_FRATW1.411e-3738.14Glycogen synthase OS=Francisella tularensis subsp.... [more]
GLGA_FRATT1.411e-3738.14Glycogen synthase OS=Francisella tularensis subsp.... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC31003B03EF AbioticL1 Citrus clementina cDNA clone C31003B03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868653 ID=FC868653; Name=FC868653; organism=Citrus clementina; type=EST; length=713bp
ATAAACCTGTGAGAGGATCAAAATCAACTGGATGAAAGCTGGAATATTAG
AATCAGACATGGTCTTAACTGTGAGCCCACACTATGCCCAAGAACTTGTT
TCTGGTGAAGACAAAGGAGTAGAATTGGATAACATCATCCGTAAAACTGG
CATTAAGGGAATTGTGAACGGGATGGATGTCCAGGAGTGGAACCCCTTGA
CTGACAAATATATAGGTGTCAAATATGATGCTTCAACTGTGATGGATGCG
AAGCCTCTTCTGAAGGAAGCCCTCCAAGCAGAAGTTGGGTTGCCTGTCGA
TAGAAATATTCCTGTCATAGGCTTCATTGGTAGACTTGAAGAGCAGAAAG
GCTCAGATATTCTTGCAGCTGCCATTCCCCATTTCATCAAAGAGAATGTT
CAGATAATAGTCCTTGGTACTGGCAAAAAACCAATGGAGAAGCAGCTTGA
ACAGTTGGAGATACTGTACCCTGAGAAAGCCAGAGGAGTAGCGAAATTCA
ATATTCCTCTGGCGCATATGATAATAGCAGGAGCTGATTTTATTTTGATT
CCAAGCAGATTTGAACCTTGTGGTCTCATTCAATTACATGCCATGCGTTA
TGGAACCGTACCTATCGTGGCTTCCACTGGTGGTTTGGTTGACACTGTGG
CAGAAGGCTTTACAGGATTCCAGATGGGAAGCTTCAGTGTTGACTGTGAG
GCTGTGGATCCAG
back to top