FC868653

Overview
NameFC868653
Unique NameFC868653
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length713
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868653 vs. ExPASy Swiss-Prot
Match: GLGA_SYNSC (Glycogen synthase OS=Synechococcus sp. (strain CC9605) GN=glgA PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 4.540e-36
Identity = 89/227 (39.21%), Postives = 132/227 (58.15%), Query Frame = 2
Query:   32 MKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTG--IKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIK-ENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTV------AEGFTGFQMGSF 685
            M A +L +D V  VSP YAQE+ + E  G +L+ ++      ++GI+NG+D+  W+P TD+ +   + A  +   K + K+ LQ  +GL V  +  V+G + RL +QKG D+L       +   + QI+VLGTG + +E  L QL   +P K      ++  L+ +I  G+D  L+PSRFEPCG+ QL+AMRYG+VP+V   GGLVDTV      A+  TGF    F
Sbjct:  180 MAAALLYADRVNGVSPTYAQEIRTAE-YGEKLEGLLNVVSGKLRGILNGIDLDAWDPATDRSLPANFSADDLY-GKAVCKKVLQERMGLEVREDAFVLGMVSRLVDQKGVDLLLQVADRLLAYTDTQIVVLGTGDRGLESGLWQLASRHPGKCAVFLTYDDDLSRLIYGGSDAFLMPSRFEPCGISQLYAMRYGSVPVVRKVGGLVDTVPPHIPAADSGTGFCFDRF 404          
BLAST of FC868653 vs. ExPASy Swiss-Prot
Match: GLGA_METSB (Glycogen synthase OS=Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906) GN=glgA PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 4.540e-36
Identity = 88/213 (41.31%), Postives = 128/213 (60.09%), Query Frame = 2
Query:   23 INWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIK--GIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVAE 655
            I ++KA +  SD + TVSP YA E+ + E  G+ LD ++R    +  GI+NG+D + W+P +D  I   +D  T+   +P  K ALQ + GL  D    ++G + RL  QKG D+L A +    +  VQ+ VLG+G+  + +QL +     P +   V  ++  +AH I AGAD I+IPSRFEPCGL QL A+RYG +PIVA  GGL DT+ +
Sbjct:  200 IGFLKAALALSDRITTVSPTYAAEIRTPEH-GMGLDGLLRTRAERLIGILNGIDDEVWDPSSDPLITEPFDVETLA-RRPANKAALQDKFGLDPDPGALLLGVVSRLSWQKGLDLLLANLDLLERLGVQLAVLGSGEPELVRQLLEAAEARPGRVGAVIGYDEAIAHRIQAGADAIVIPSRFEPCGLTQLCALRYGALPIVARVGGLADTIID 410          
BLAST of FC868653 vs. ExPASy Swiss-Prot
Match: GLGA_CHLPD (Glycogen synthase OS=Chlorobium phaeobacteroides (strain DSM 266) GN=glgA PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 4.540e-36
Identity = 78/222 (35.14%), Postives = 126/222 (56.76%), Query Frame = 2
Query:   20 KINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNII--RKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVAEGFTGFQMG 679
            ++N +  G+   D++ T S  YA  +    ++   L  I+  RK  + GI+NG+D ++WNP TDK I  +Y     +D K   K+ALQ E GL VD   P++G I   +E +G+D+LA ++   +  ++Q+++ G+G K  EK        YPE+     ++     H+ IAG D +L+P R E CG++QL AM YGT+P+V + GG+++T+ E   G   G
Sbjct:  210 EVNMLYTGVEHVDLLTTTSKQYADTIRLDGEETYGLGRILEERKENLHGILNGIDTRQWNPATDKLIKKRYSIER-LDGKADNKKALQEEAGLSVDAERPLVGVIAGFDEFQGADLLARSLEKLVALDMQLVICGSGDKVYEKTFRDFAEQYPEQVSLQIEYTDAFMHLAIAGMDILLMPGRIESCGMMQLFAMSYGTIPVVYAGGGIIETIHELQEGIGSG 430          
BLAST of FC868653 vs. ExPASy Swiss-Prot
Match: GLGA_SERP5 (Glycogen synthase OS=Serratia proteamaculans (strain 568) GN=glgA PE=3 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 5.929e-36
Identity = 86/237 (36.29%), Postives = 136/237 (57.38%), Query Frame = 2
Query:   20 KINWMKAGILESDMVLTVSPHYAQELVSGE-DKGVE--LDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVAEG-----FTGFQMGSFSVDCEAV 706
            +++++KAG+  +D +  VSP YA+E+   E   G+E  L    R+  + GI+NG+D + W+P  D  +  +YDA  + + K   K  LQ  +GL VD ++P+   + RL  QKG D++  A+P  +++  Q+ +LG G   +++        YPE+      ++   +H II GAD I++PSRFEPCGL QL+ ++YGT+P+V  TGGL DTV +        G   G    DC+AV
Sbjct:  194 QMSFLKAGLFYADHITAVSPTYAREITRPEFGYGMEGLLQERQRQGRLSGILNGVDDKIWDPSHDPRLTARYDADNLKN-KAKNKLHLQKAMGLKVDESLPLFAVVSRLTSQKGLDLVLEALPALLEQGGQLALLGAGDAVLQQAFLAAAADYPEQVGVQIGYHEAFSHRIIGGADVIMVPSRFEPCGLTQLYGLKYGTLPLVRRTGGLADTVVDCALENLADGSASGFVFDDCDAV 429          
BLAST of FC868653 vs. ExPASy Swiss-Prot
Match: GLGA_CHLP8 (Glycogen synthase OS=Chlorobaculum parvum (strain NCIB 8327) GN=glgA PE=3 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 5.929e-36
Identity = 80/213 (37.56%), Postives = 124/213 (58.22%), Query Frame = 2
Query:   23 INWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIR--KTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVAE 655
            IN +  GI  +D+V T SP YA+++ S  +    +D  ++  K    GI+NGMD ++WNP +DK I  +Y A+   + K   K+ L  EVGLP     PV+G I   ++ +G  +L  ++   ++ ++Q+IV G+G K  E++L  L   +PEK      F     H +IAG D +++PSR E CG+ Q+ AM YGTVPI  + GG+V+T+ E
Sbjct:  211 INLLATGIKYADLVTTTSPSYAKQIASDPESSFGMDKALKACKDRFHGILNGMDTRQWNPSSDKLIKKRYSAAQP-ELKLEDKKVLLEEVGLPFSEETPVVGVITTFDDVQGMGLLKESLSKLLELDLQLIVSGSGNKEFEQELRDLVEEHPEKLAVNTDFTDAFYHQMIAGLDMLIMPSRIESCGMKQMFAMNYGTVPIAYAGGGIVETIEE 422          
BLAST of FC868653 vs. ExPASy Swiss-Prot
Match: GLGA2_ANAVT (Glycogen synthase 2 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=glgA2 PE=3 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 5.929e-36
Identity = 87/212 (41.04%), Postives = 130/212 (61.32%), Query Frame = 2
Query:   26 NWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTG--IKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIK-ENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVA 652
            N M A +  +D V TVSP YA+++ +    G +++ ++      + GIVNG+D + ++P  DK+I   + A T +D +   K ALQ EVGL V+ N  +IG + RL EQKG D++   +  F+   + Q ++LGTG +  E Q+ QL   YP +      +N  L+  I AG+D  L+PSRFEPCG+ Q+ A+RYG++PIV  TGGLVDTV+
Sbjct:  178 NTMAAAVQFADRVNTVSPTYAEQIKTPA-YGEKIEGLLSFISGKLSGIVNGIDTEVYDPANDKFIAQTFTADT-LDKRKANKIALQEEVGLEVNSNAFLIGMVTRLVEQKGLDLVIQMLDRFMAYTDAQFVLLGTGDRYYETQMWQLASRYPGRMATYLLYNDALSRRIYAGSDAFLMPSRFEPCGISQMMALRYGSIPIVRRTGGLVDTVS 387          
BLAST of FC868653 vs. ExPASy Swiss-Prot
Match: GLGA_VIBVY (Glycogen synthase OS=Vibrio vulnificus (strain YJ016) GN=glgA PE=3 SV=2)

HSP 1 Score: 150.599 bits (379), Expect = 7.744e-36
Identity = 82/211 (38.86%), Postives = 128/211 (60.66%), Query Frame = 2
Query:   32 MKAGILESDMVLTVSPHYAQELVSG-EDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDAS--TVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVAE 655
            +KAG++ +D +  VSP YA+EL +     G+  +   R   + GI+NG D   W+P TD Y+ + Y A+  +++  K   K ALQ +VGLPV +++ + G + RL  QKG   L   +  F+K +VQ++++GTG   +  QL  +   + EK   V  +N  LAH++ A +DF L+PS FEPCGL Q+++M YG++PIV   GGL D+V +
Sbjct:  207 LKAGVMNADKINAVSPTYAEELKTELGSHGMAWEFQQRAGDLVGILNGCDYSAWHPDTDSYLPINYKATKQSMVRGKNGCKRALQEQVGLPV-KDVAMFGMVCRLTHQKGVHYLLPVLTEFLKLDVQLVLVGTGDPLLAAQLRDVAAQFGEKFVFVEAYNNQLAHLVEAASDFFLMPSEFEPCGLNQIYSMAYGSLPIVRGVGGLKDSVCD 416          
BLAST of FC868653 vs. ExPASy Swiss-Prot
Match: GLGA_THICR (Glycogen synthase OS=Thiomicrospira crunogena (strain XCL-2) GN=glgA PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 7.744e-36
Identity = 94/217 (43.32%), Postives = 130/217 (59.91%), Query Frame = 2
Query:   23 INWMKAGILESDMVLTVSPHYAQELVSGEDK-GVE--LDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTV-MDAKPLLKEALQAEVGLP---VDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKE-NVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTV 649
            ++ +KAGI  +D V TVSP YA+E+   E   G+E  L   + +  + GI+NG+D   WNP TD +I   Y      + AK   K+ +     LP   VD + PVIG +GRL  QKG D++   +P  I++ NV+ +++GTG    E QL +L   YPE+      ++  LAH + AGAD  L+PSRFEPCGL QL+++ YGT PIV STGGL DTV
Sbjct:  203 MSMLKAGIQMADWVTTVSPTYAKEITFPEYAYGLEGVLIKRLDEGRLVGILNGIDHDVWNPKTDPFIRYHYSVDKGRVAAKKRNKKDMLDFWDLPKAVVDADDPVIGLVGRLVPQKGIDLVLEVLPELIEQTNVRFVIVGTGDSLFEYQLTELAHQYPERLMIYIGYSESLAHKVEAGADLFLMPSRFEPCGLNQLYSLAYGTPPIVHSTGGLSDTV 419          
BLAST of FC868653 vs. ExPASy Swiss-Prot
Match: GLGA_SYNPW (Glycogen synthase OS=Synechococcus sp. (strain WH7803) GN=glgA PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 7.744e-36
Identity = 83/209 (39.71%), Postives = 128/209 (61.24%), Query Frame = 2
Query:   32 MKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTG--IKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIK-ENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTV 649
            M A +L +D V  VSP YAQE+ + E  G +L+ ++      ++GI+NG+D++ WNP TDK +   + ++ +   K   K+ LQ  +GL ++ +  ++G + RL +QKG D+L       +   + QI+VLGTG + +E  L QL   +P +      ++  L+ +I AG+D  L+PSRFEPCG+ QL+AMRYG VP+V   GGLVDTV
Sbjct:  180 MAAALLYADRVNAVSPTYAQEIRTSE-YGEKLEGLLNYISGKLRGILNGIDLEAWNPATDKALPATFSSANLA-GKATCKQVLQERMGLTLNPDTFLLGMVSRLVDQKGVDLLLQVADRLLAYTDTQIVVLGTGDRGLESGLWQLASRHPGRVAVFLTYDDALSRLIYAGSDAFLMPSRFEPCGISQLYAMRYGCVPVVRKVGGLVDTV 386          
BLAST of FC868653 vs. ExPASy Swiss-Prot
Match: GLGA_HAEIG (Glycogen synthase OS=Haemophilus influenzae (strain PittGG) GN=glgA PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 7.744e-36
Identity = 82/215 (38.14%), Postives = 127/215 (59.07%), Query Frame = 2
Query:   20 KINWMKAGILESDMVLTVSPHYAQELVSGEDK-GVE--LDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVAE 655
            +I+++K+G+  SD    VSP YAQE+ + E   G++  L  +  +  + GI+NG+D   W+P  D+YI   Y     M  K   K  LQA   LP D +      + RL EQKG D+L  +    +K+  Q+++LG+G   +E+ + +L   YP+       ++  L+H+++AG D IL+PSRFEPCGL QL+ ++YGT+P+V  TGGL DTV +
Sbjct:  194 QISYLKSGLFYSDASTAVSPTYAQEITTPEFAYGLQGLLSGLKAQDRLVGILNGVDENIWHPNVDQYIPHHYKLK-YMAGKKKNKAELQAYFNLPQDESALAFVMVTRLTEQKGVDLLIESADEIVKQGGQLMILGSGAPHLEQGIRELAERYPQNIAVKIGYDEALSHLMVAGGDVILVPSRFEPCGLTQLYGLQYGTLPLVRKTGGLADTVVD 407          
The following BLAST results are available for this feature:
BLAST of FC868653 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 364
Match NameE-valueIdentityDescription
GLGA_SYNSC4.540e-3639.21Glycogen synthase OS=Synechococcus sp. (strain CC9... [more]
GLGA_METSB4.540e-3641.31Glycogen synthase OS=Methylocella silvestris (stra... [more]
GLGA_CHLPD4.540e-3635.14Glycogen synthase OS=Chlorobium phaeobacteroides (... [more]
GLGA_SERP55.929e-3636.29Glycogen synthase OS=Serratia proteamaculans (stra... [more]
GLGA_CHLP85.929e-3637.56Glycogen synthase OS=Chlorobaculum parvum (strain ... [more]
GLGA2_ANAVT5.929e-3641.04Glycogen synthase 2 OS=Anabaena variabilis (strain... [more]
GLGA_VIBVY7.744e-3638.86Glycogen synthase OS=Vibrio vulnificus (strain YJ0... [more]
GLGA_THICR7.744e-3643.32Glycogen synthase OS=Thiomicrospira crunogena (str... [more]
GLGA_SYNPW7.744e-3639.71Glycogen synthase OS=Synechococcus sp. (strain WH7... [more]
GLGA_HAEIG7.744e-3638.14Glycogen synthase OS=Haemophilus influenzae (strai... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC31003B03EF AbioticL1 Citrus clementina cDNA clone C31003B03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868653 ID=FC868653; Name=FC868653; organism=Citrus clementina; type=EST; length=713bp
ATAAACCTGTGAGAGGATCAAAATCAACTGGATGAAAGCTGGAATATTAG
AATCAGACATGGTCTTAACTGTGAGCCCACACTATGCCCAAGAACTTGTT
TCTGGTGAAGACAAAGGAGTAGAATTGGATAACATCATCCGTAAAACTGG
CATTAAGGGAATTGTGAACGGGATGGATGTCCAGGAGTGGAACCCCTTGA
CTGACAAATATATAGGTGTCAAATATGATGCTTCAACTGTGATGGATGCG
AAGCCTCTTCTGAAGGAAGCCCTCCAAGCAGAAGTTGGGTTGCCTGTCGA
TAGAAATATTCCTGTCATAGGCTTCATTGGTAGACTTGAAGAGCAGAAAG
GCTCAGATATTCTTGCAGCTGCCATTCCCCATTTCATCAAAGAGAATGTT
CAGATAATAGTCCTTGGTACTGGCAAAAAACCAATGGAGAAGCAGCTTGA
ACAGTTGGAGATACTGTACCCTGAGAAAGCCAGAGGAGTAGCGAAATTCA
ATATTCCTCTGGCGCATATGATAATAGCAGGAGCTGATTTTATTTTGATT
CCAAGCAGATTTGAACCTTGTGGTCTCATTCAATTACATGCCATGCGTTA
TGGAACCGTACCTATCGTGGCTTCCACTGGTGGTTTGGTTGACACTGTGG
CAGAAGGCTTTACAGGATTCCAGATGGGAAGCTTCAGTGTTGACTGTGAG
GCTGTGGATCCAG
back to top