FC868653

Overview
NameFC868653
Unique NameFC868653
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length713
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868653 vs. ExPASy Swiss-Prot
Match: GLGA_DEIGD (Glycogen synthase OS=Deinococcus geothermalis (strain DSM 11300) GN=glgA PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 3.597e-33
Identity = 92/230 (40.00%), Postives = 129/230 (56.09%), Query Frame = 2
Query:   23 INWMKAGILESDMVLTVSPHYAQELVSGE-DKGVE--LDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVAEGFTGFQMGSFSVDCEA 703
            +N MKAG++ ++ V TVSP YA+E+ + +  +G+E  L  +  +  + GI+NG+D   WNP TD  I    D +     K      L+AE GL    + P++G + RL  QKG D+L  A+P  + E   ++VLG G   +   L      Y  +   V+  N  LAH I AGAD   +PSRFEPCGL Q+ A+RYGT+PIV  TGGLVDTV  G  GF+    + +  A
Sbjct:  181 LNLMKAGLVFAEQVTTVSPTYAREITTPQYGEGLEGVLIRLALEGRLSGILNGLDQDRWNPRTDPDIRPYADPA----GKAANGSVLRAEFGLD---DAPILGVVSRLANQKGIDLLIEALPELV-ERWNVVVLGGGDPLLTAALHGWA--YHPRVAFVSGLNEALAHRIYAGADAFAMPSRFEPCGLSQMIALRYGTLPIVRETGGLVDTV-PGDVGFRFADATTEALA 399          
BLAST of FC868653 vs. ExPASy Swiss-Prot
Match: GLGA_THECA (Glycogen synthase OS=Thermus caldophilus GN=glgA PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 4.698e-33
Identity = 78/218 (35.78%), Postives = 126/218 (57.80%), Query Frame = 2
Query:   20 KINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTG--IKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVAEGFTG 667
            ++N MK GI+ +  V TV P YA+E+ + E  G+ LD ++R+    ++GI+NG+D + ++P  D Y+   Y        K   KE  +   GL      PV+ ++GRL+ QKG D++  A+P  ++   ++ V G G   +++   + E   PE  R +  ++  +A +  AGA+ +L+PSRFEPCGL+Q+ A RYGT P+  + GGL DTV +G  G
Sbjct:  174 RVNLMKGGIVFARRVTTVRPSYAEEIQTPEF-GMGLDGVLRRHAGKLRGILNGLDTEVFDPGKDPYLPAPYTREDP-SGKARAKEVFRERTGL----RPPVLAYVGRLDYQKGLDLVLKALPRLLEMGFRLYVQGVGDGGLQEAFLRAEEENPEGVRFLPAYDEAMARLAYAGAEAVLVPSRFEPCGLVQMIASRYGTPPVARAVGGLKDTVEDGRAG 385          
BLAST of FC868653 vs. ExPASy Swiss-Prot
Match: GLGA_RHIL3 (Glycogen synthase OS=Rhizobium leguminosarum bv. viciae (strain 3841) GN=glgA PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 4.698e-33
Identity = 81/213 (38.03%), Postives = 124/213 (58.22%), Query Frame = 2
Query:   23 INWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNII--RKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVAE 655
            + ++K G+  +  + TVSP YA E+++ E  G+ L+ +I  R   + GIVNG+D   WNP TD  +   Y  +T+ + +   + ++    GL  D + P+   I RL  QKG DI+A      +    +++VLG+G+  +E  L      +P +      +N P++H++ AG D I+IPSRFEPCGL QL+ +RYG VPIVA TGGL DTV +
Sbjct:  197 VGFLKGGLKTAHAITTVSPTYADEILTSEF-GMGLEGVIASRVDDLHGIVNGIDTDIWNPATDPVVHTHYGQTTLKNREEN-RRSIAEFFGLDND-DAPIFCVISRLTWQKGMDIVANVADEIVAMGGKLVVLGSGEAALEGALLASASRHPGRVGVSIGYNEPMSHLMQAGCDAIIIPSRFEPCGLTQLYGLRYGCVPIVARTGGLNDTVID 406          
BLAST of FC868653 vs. ExPASy Swiss-Prot
Match: GLGA_PROM9 (Glycogen synthase OS=Prochlorococcus marinus (strain MIT 9312) GN=glgA PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 4.698e-33
Identity = 84/209 (40.19%), Postives = 124/209 (59.33%), Query Frame = 2
Query:   32 MKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTG--IKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIK-ENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTV 649
            M A +L +D V  VSP YA E+ + E  G  L+ ++      ++GI+NG+D+ EWNP  D  +  K+  + + + +   K+ LQ E+GL V+    ++G + RL +QKG D+L       +   + QI VLGTG + +E  L QL + YP +      ++  L+ +I  G+D  L+PSRFEPCG+ QL AMRYG+VPIV   GGLVDTV
Sbjct:  180 MAAAMLYADRVNAVSPTYADEIKTHE-YGESLEGLLNYISGKLRGILNGIDLDEWNPAKDPVLPAKFSINNLKN-RTENKKILQREMGLEVNPKKYLLGMVSRLVDQKGVDLLLQVSRRLLAYTDSQIAVLGTGDRYLESGLWQLALDYPGRFSVFLTYDDSLSRLIYGGSDAFLMPSRFEPCGISQLLAMRYGSVPIVRRVGGLVDTV 386          
BLAST of FC868653 vs. ExPASy Swiss-Prot
Match: GLGA_JANSC (Glycogen synthase OS=Jannaschia sp. (strain CCS1) GN=glgA PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 4.698e-33
Identity = 86/212 (40.57%), Postives = 127/212 (59.91%), Query Frame = 2
Query:   20 KINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIR--KTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTV 649
            +I+ +KAG++ +  + TVS  YA+EL++ +  G+ +D ++R  +  + GIVNG+D+  WNP TD  I       T    K   K ALQAE GL      P+   + RL +QKG D+L  A+   ++   Q+ VLG+G   +E  L +     P  A  +  ++  L+H ++AG D IL+PSRFEPCGL QL+ +RYGT+P+VA TGGL DTV
Sbjct:  194 QISALKAGLMGAAQITTVSQTYAEELMTPQF-GMGMDGVLRHRRDALTGIVNGIDLDVWNPETDPQI----TPYTTFKGKAANKAALQAEFGLSKAPG-PLCVLVSRLTDQKGIDLLLDAMHVVLERGGQVAVLGSGAPDLEVCLLERADAEPNLAVKIG-YDEALSHRMMAGGDCILVPSRFEPCGLTQLYGLRYGTLPLVALTGGLADTV 398          
BLAST of FC868653 vs. ExPASy Swiss-Prot
Match: GLGA_ENTS8 (Glycogen synthase OS=Enterobacter sakazakii (strain ATCC BAA-894) GN=glgA PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 4.698e-33
Identity = 74/216 (34.26%), Postives = 126/216 (58.33%), Query Frame = 2
Query:   20 KINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTG----IKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVAE 655
            +I+++KAG+  +D +  VSP YA+E+   +     L+ ++++      + GI+NG+D   WNP  D  +  +Y   T ++ K   K  LQ  +GL V+  +P+   + RL  QKG D++  A+P  +++  Q+ +LG G   +++        +P +      ++   +H I+ GAD IL+PSRFEPCGL QL+ ++YGT+P+V  TGGL DTV++
Sbjct:  194 EISFLKAGLYYADHITAVSPTYAREITEPQF-AYGLEGLLKQRHSEGRLSGILNGVDENIWNPAHDLLLASRYTRDT-LEEKAENKRQLQIAMGLKVNDKVPLFAVVSRLTSQKGLDLVLEALPGLLEQGGQLALLGAGDPVLQEGFLAAAAEHPGQVGVQIGYHEAFSHRIMGGADVILVPSRFEPCGLTQLYGLKYGTLPLVRRTGGLADTVSD 407          
BLAST of FC868653 vs. ExPASy Swiss-Prot
Match: GLGA_CITK8 (Glycogen synthase OS=Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) GN=glgA PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 4.698e-33
Identity = 73/216 (33.80%), Postives = 127/216 (58.80%), Query Frame = 2
Query:   20 KINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTG----IKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVAE 655
            +I+++KAG+  +D +  VSP YA+E+   +     ++ ++R+      + G++NG+D + W+P TD  +  +Y   + ++ K   K  LQ  +GL VD   P+   + RL  QKG D++  A+P  +++  Q+ +LG G   +++        +P +      ++   +H I+ GAD IL+PSRFEPCGL QL+ ++YGT+P+V  TGGL DTV++
Sbjct:  194 QISFLKAGLYYADHITAVSPTYAREITEPQF-AYGMEGLLRQRHQEGRLSGVLNGVDEKIWSPETDLLLAARYTRDS-LEEKAENKRQLQIAMGLKVDDKAPLFAVVSRLTSQKGLDLVLEALPGLLEQGGQLALLGAGDPVLQEGFLAAAAEHPGQVGVQIGYHEAFSHRIMGGADVILVPSRFEPCGLTQLYGLKYGTLPLVRRTGGLADTVSD 407          
BLAST of FC868653 vs. ExPASy Swiss-Prot
Match: GLGA_SALAR (Glycogen synthase OS=Salmonella arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980) GN=glgA PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 6.136e-33
Identity = 72/216 (33.33%), Postives = 129/216 (59.72%), Query Frame = 2
Query:   20 KINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKG----IVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVAE 655
            +I+++KAG+  +D +  VSP YA+E+   +     ++ ++R+  ++G    ++NG+D + W+P +D  +  +Y   T ++ K   K  LQ  +GL V+  +P+   + RL  QKG D++  A+P  +++  Q+ +LG G   +++        +P +      ++   +H I+ GAD IL+PSRFEPCGL QL+ ++YGT+P+V  TGGL DTV++
Sbjct:  194 QISFLKAGLYYADHITAVSPTYAREITEPQF-AYGMEGLLRQRHLEGRLSGVLNGVDEKIWSPESDLLLASRYTRDT-LEEKAENKRQLQIAMGLKVNDKVPLFAVVSRLTSQKGLDLVLEALPGLLEQGGQLALLGAGDPVLQEGFLAAAAEHPGQVGVQIGYHEAFSHRIMGGADIILVPSRFEPCGLTQLYGLKYGTLPLVRRTGGLADTVSD 407          
BLAST of FC868653 vs. ExPASy Swiss-Prot
Match: GLGA_RHOS4 (Glycogen synthase OS=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) GN=glgA PE=3 SV=3)

HSP 1 Score: 140.969 bits (354), Expect = 6.136e-33
Identity = 79/208 (37.98%), Postives = 123/208 (59.13%), Query Frame = 2
Query:   32 MKAGILESDMVLTVSPHYAQELVSGEDKGVELDNII--RKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTV 649
            +KAG++ +D + TVSP YA EL+  E  G+ L  +I  R   + GI+NG+D   W+P  ++     YDA + + AK   +  L     L V   + ++  + RL  QKG D++   +P FI     + VLGTG  P+E  + +LE+ +P +      ++  L+H++ AG D +L+PSRFEPCGL Q++ +RYG +P+VA TGGL DT+
Sbjct:  205 LKAGLVSADHITTVSPTYACELMRPEF-GMGLQGVIAQRAGQVTGILNGVDTDIWSPEVEER---PYDAES-LKAKAENRAVLSGAFKLSVPGPLAIL--VSRLTYQKGIDLIPEVLPDFIAAGGGLAVLGTGDAPLEAAMRELEVRFPGRVGVRIGYDEGLSHLMFAGGDAVLVPSRFEPCGLTQMYGLRYGAIPVVALTGGLADTI 405          
BLAST of FC868653 vs. ExPASy Swiss-Prot
Match: GLGA2_SYNJA (Glycogen synthase 2 OS=Synechococcus sp. (strain JA-3-3Ab) GN=glgA2 PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 6.136e-33
Identity = 81/212 (38.21%), Postives = 128/212 (60.38%), Query Frame = 2
Query:   26 NWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTG--IKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIK-ENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVA 652
            N M AGIL +D V TVSP YA E+ +    G  L +++   G  ++GI+NG+D ++++P TD  +   +     +  + + K ALQ+ +GL V+ ++ ++G + RL EQKG D+L   +  F+   + Q ++LG+G+   E ++ ++   +P +      +   LA +I  GAD  L+PSRFEPCG+ Q+ AMRYG VPI   TGGLVDTV+
Sbjct:  189 NTMAAGILYADQVNTVSPTYAMEIRTSLH-GEGLQDLLAWKGERLRGILNGIDTEKFDPRTDPALEANFSIDD-LSGRAVNKAALQSRLGLTVNPDVFLMGMVARLVEQKGIDLLIQTLDRFLAYSDSQFVLLGSGEAYYEGRIREMAERHPGRMAYQQGYQPQLAQLIYGGADVFLMPSRFEPCGISQMIAMRYGCVPIARRTGGLVDTVS 398          
The following BLAST results are available for this feature:
BLAST of FC868653 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 364
Match NameE-valueIdentityDescription
GLGA_DEIGD3.597e-3340.00Glycogen synthase OS=Deinococcus geothermalis (str... [more]
GLGA_THECA4.698e-3335.78Glycogen synthase OS=Thermus caldophilus GN=glgA P... [more]
GLGA_RHIL34.698e-3338.03Glycogen synthase OS=Rhizobium leguminosarum bv. v... [more]
GLGA_PROM94.698e-3340.19Glycogen synthase OS=Prochlorococcus marinus (stra... [more]
GLGA_JANSC4.698e-3340.57Glycogen synthase OS=Jannaschia sp. (strain CCS1) ... [more]
GLGA_ENTS84.698e-3334.26Glycogen synthase OS=Enterobacter sakazakii (strai... [more]
GLGA_CITK84.698e-3333.80Glycogen synthase OS=Citrobacter koseri (strain AT... [more]
GLGA_SALAR6.136e-3333.33Glycogen synthase OS=Salmonella arizonae (strain A... [more]
GLGA_RHOS46.136e-3337.98Glycogen synthase OS=Rhodobacter sphaeroides (stra... [more]
GLGA2_SYNJA6.136e-3338.21Glycogen synthase 2 OS=Synechococcus sp. (strain J... [more]

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Properties
Property NameValue
Genbank descriptionC31003B03EF AbioticL1 Citrus clementina cDNA clone C31003B03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868653 ID=FC868653; Name=FC868653; organism=Citrus clementina; type=EST; length=713bp
ATAAACCTGTGAGAGGATCAAAATCAACTGGATGAAAGCTGGAATATTAG
AATCAGACATGGTCTTAACTGTGAGCCCACACTATGCCCAAGAACTTGTT
TCTGGTGAAGACAAAGGAGTAGAATTGGATAACATCATCCGTAAAACTGG
CATTAAGGGAATTGTGAACGGGATGGATGTCCAGGAGTGGAACCCCTTGA
CTGACAAATATATAGGTGTCAAATATGATGCTTCAACTGTGATGGATGCG
AAGCCTCTTCTGAAGGAAGCCCTCCAAGCAGAAGTTGGGTTGCCTGTCGA
TAGAAATATTCCTGTCATAGGCTTCATTGGTAGACTTGAAGAGCAGAAAG
GCTCAGATATTCTTGCAGCTGCCATTCCCCATTTCATCAAAGAGAATGTT
CAGATAATAGTCCTTGGTACTGGCAAAAAACCAATGGAGAAGCAGCTTGA
ACAGTTGGAGATACTGTACCCTGAGAAAGCCAGAGGAGTAGCGAAATTCA
ATATTCCTCTGGCGCATATGATAATAGCAGGAGCTGATTTTATTTTGATT
CCAAGCAGATTTGAACCTTGTGGTCTCATTCAATTACATGCCATGCGTTA
TGGAACCGTACCTATCGTGGCTTCCACTGGTGGTTTGGTTGACACTGTGG
CAGAAGGCTTTACAGGATTCCAGATGGGAAGCTTCAGTGTTGACTGTGAG
GCTGTGGATCCAG
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