FC868656

Overview
NameFC868656
Unique NameFC868656
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length710
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC868656 vs. ExPASy Swiss-Prot
Match: DNAK_SHISS (Chaperone protein dnaK OS=Shigella sonnei (strain Ss046) GN=dnaK PE=2 SV=1)

HSP 1 Score: 228.794 bits (582), Expect = 2.247e-59
Identity = 123/226 (54.42%), Postives = 159/226 (70.35%), Query Frame = 3 
Query:    3 TVFDAKSLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGSTIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIE----EGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEI 668
            T+F  K LIGRRF D  VQ D+ + PFK+IA  AD     V  KG++   A  +IS+ VL KM++ AE YLG  +  AV+TVPAYFND+QRQATKDAG IAGL V RIINEPTAAA+AYGLDK     G + + ++DLGGGTFD+S++ I+    E  FEV AT GDTHLGGEDFD+R++N+ V+EFK+    D+  +P A++RL+ A E+AK  LSS  QT + +
Sbjct:   65 TLFAIKRLIGRRFQDEEVQRDVSIMPFKIIA--ADNGDAWVEVKGQK--MAPPQISAEVLKKMKKTAEDYLGEPVTEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALAYGLDK---GTGNRTIAVYDLGGGTFDISIIEIDEVDGEKTFEVLATNGDTHLGGEDFDSRLINYLVEEFKKDQGIDLRNDPLAMQRLKEAAEKAKIELSSAQQTDVNL 283
[Close]
BLAST of FC868656 vs. ExPASy Swiss-Prot
Match: DNAK_SHIFL (Chaperone protein dnaK OS=Shigella flexneri GN=dnaK PE=2 SV=1)

HSP 1 Score: 228.794 bits (582), Expect = 2.247e-59
Identity = 123/226 (54.42%), Postives = 159/226 (70.35%), Query Frame = 3 
Query:    3 TVFDAKSLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGSTIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIE----EGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEI 668
            T+F  K LIGRRF D  VQ D+ + PFK+IA  AD     V  KG++   A  +IS+ VL KM++ AE YLG  +  AV+TVPAYFND+QRQATKDAG IAGL V RIINEPTAAA+AYGLDK     G + + ++DLGGGTFD+S++ I+    E  FEV AT GDTHLGGEDFD+R++N+ V+EFK+    D+  +P A++RL+ A E+AK  LSS  QT + +
Sbjct:   65 TLFAIKRLIGRRFQDEEVQRDVSIMPFKIIA--ADNGDAWVEVKGQK--MAPPQISAEVLKKMKKTAEDYLGEPVTEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALAYGLDK---GTGNRTIAVYDLGGGTFDISIIEIDEVDGEKTFEVLATNGDTHLGGEDFDSRLINYLVEEFKKDQGIDLRNDPLAMQRLKEAAEKAKIELSSAQQTDVNL 283
[Close]
BLAST of FC868656 vs. ExPASy Swiss-Prot
Match: DNAK_SHIF8 (Chaperone protein dnaK OS=Shigella flexneri serotype 5b (strain 8401) GN=dnaK PE=2 SV=1)

HSP 1 Score: 228.794 bits (582), Expect = 2.247e-59
Identity = 123/226 (54.42%), Postives = 159/226 (70.35%), Query Frame = 3 
Query:    3 TVFDAKSLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGSTIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIE----EGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEI 668
            T+F  K LIGRRF D  VQ D+ + PFK+IA  AD     V  KG++   A  +IS+ VL KM++ AE YLG  +  AV+TVPAYFND+QRQATKDAG IAGL V RIINEPTAAA+AYGLDK     G + + ++DLGGGTFD+S++ I+    E  FEV AT GDTHLGGEDFD+R++N+ V+EFK+    D+  +P A++RL+ A E+AK  LSS  QT + +
Sbjct:   65 TLFAIKRLIGRRFQDEEVQRDVSIMPFKIIA--ADNGDAWVEVKGQK--MAPPQISAEVLKKMKKTAEDYLGEPVTEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALAYGLDK---GTGNRTIAVYDLGGGTFDISIIEIDEVDGEKTFEVLATNGDTHLGGEDFDSRLINYLVEEFKKDQGIDLRNDPLAMQRLKEAAEKAKIELSSAQQTDVNL 283
[Close]
BLAST of FC868656 vs. ExPASy Swiss-Prot
Match: DNAK_SHIDS (Chaperone protein dnaK OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=dnaK PE=2 SV=1)

HSP 1 Score: 228.794 bits (582), Expect = 2.247e-59
Identity = 123/226 (54.42%), Postives = 159/226 (70.35%), Query Frame = 3 
Query:    3 TVFDAKSLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGSTIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIE----EGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEI 668
            T+F  K LIGRRF D  VQ D+ + PFK+IA  AD     V  KG++   A  +IS+ VL KM++ AE YLG  +  AV+TVPAYFND+QRQATKDAG IAGL V RIINEPTAAA+AYGLDK     G + + ++DLGGGTFD+S++ I+    E  FEV AT GDTHLGGEDFD+R++N+ V+EFK+    D+  +P A++RL+ A E+AK  LSS  QT + +
Sbjct:   65 TLFAIKRLIGRRFQDEEVQRDVSIMPFKIIA--ADNGDAWVEVKGQK--MAPPQISAEVLKKMKKTAEDYLGEPVTEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALAYGLDK---GTGNRTIAVYDLGGGTFDISIIEIDEVDGEKTFEVLATNGDTHLGGEDFDSRLINYLVEEFKKDQGIDLRNDPLAMQRLKEAAEKAKIELSSAQQTDVNL 283
[Close]
BLAST of FC868656 vs. ExPASy Swiss-Prot
Match: DNAK_SHIBS (Chaperone protein dnaK OS=Shigella boydii serotype 4 (strain Sb227) GN=dnaK PE=2 SV=1)

HSP 1 Score: 228.794 bits (582), Expect = 2.247e-59
Identity = 123/226 (54.42%), Postives = 159/226 (70.35%), Query Frame = 3 
Query:    3 TVFDAKSLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGSTIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIE----EGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEI 668
            T+F  K LIGRRF D  VQ D+ + PFK+IA  AD     V  KG++   A  +IS+ VL KM++ AE YLG  +  AV+TVPAYFND+QRQATKDAG IAGL V RIINEPTAAA+AYGLDK     G + + ++DLGGGTFD+S++ I+    E  FEV AT GDTHLGGEDFD+R++N+ V+EFK+    D+  +P A++RL+ A E+AK  LSS  QT + +
Sbjct:   65 TLFAIKRLIGRRFQDEEVQRDVSIMPFKIIA--ADNGDAWVEVKGQK--MAPPQISAEVLKKMKKTAEDYLGEPVTEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALAYGLDK---GTGNRTIAVYDLGGGTFDISIIEIDEVDGEKTFEVLATNGDTHLGGEDFDSRLINYLVEEFKKDQGIDLRNDPLAMQRLKEAAEKAKIELSSAQQTDVNL 283
[Close]
BLAST of FC868656 vs. ExPASy Swiss-Prot
Match: DNAK_ECOUT (Chaperone protein dnaK OS=Escherichia coli (strain UTI89 / UPEC) GN=dnaK PE=2 SV=1)

HSP 1 Score: 228.794 bits (582), Expect = 2.247e-59
Identity = 123/226 (54.42%), Postives = 159/226 (70.35%), Query Frame = 3 
Query:    3 TVFDAKSLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGSTIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIE----EGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEI 668
            T+F  K LIGRRF D  VQ D+ + PFK+IA  AD     V  KG++   A  +IS+ VL KM++ AE YLG  +  AV+TVPAYFND+QRQATKDAG IAGL V RIINEPTAAA+AYGLDK     G + + ++DLGGGTFD+S++ I+    E  FEV AT GDTHLGGEDFD+R++N+ V+EFK+    D+  +P A++RL+ A E+AK  LSS  QT + +
Sbjct:   65 TLFAIKRLIGRRFQDEEVQRDVSIMPFKIIA--ADNGDAWVEVKGQK--MAPPQISAEVLKKMKKTAEDYLGEPVTEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALAYGLDK---GTGNRTIAVYDLGGGTFDISIIEIDEVDGEKTFEVLATNGDTHLGGEDFDSRLINYLVEEFKKDQGIDLRNDPLAMQRLKEAAEKAKIELSSAQQTDVNL 283
[Close]
BLAST of FC868656 vs. ExPASy Swiss-Prot
Match: DNAK_ECOLI (Chaperone protein dnaK OS=Escherichia coli (strain K12) GN=dnaK PE=1 SV=2)

HSP 1 Score: 228.794 bits (582), Expect = 2.247e-59
Identity = 123/226 (54.42%), Postives = 159/226 (70.35%), Query Frame = 3 
Query:    3 TVFDAKSLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGSTIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIE----EGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEI 668
            T+F  K LIGRRF D  VQ D+ + PFK+IA  AD     V  KG++   A  +IS+ VL KM++ AE YLG  +  AV+TVPAYFND+QRQATKDAG IAGL V RIINEPTAAA+AYGLDK     G + + ++DLGGGTFD+S++ I+    E  FEV AT GDTHLGGEDFD+R++N+ V+EFK+    D+  +P A++RL+ A E+AK  LSS  QT + +
Sbjct:   65 TLFAIKRLIGRRFQDEEVQRDVSIMPFKIIA--ADNGDAWVEVKGQK--MAPPQISAEVLKKMKKTAEDYLGEPVTEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALAYGLDK---GTGNRTIAVYDLGGGTFDISIIEIDEVDGEKTFEVLATNGDTHLGGEDFDSRLINYLVEEFKKDQGIDLRNDPLAMQRLKEAAEKAKIELSSAQQTDVNL 283
[Close]
BLAST of FC868656 vs. ExPASy Swiss-Prot
Match: DNAK_ECOLC (Chaperone protein dnaK OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=dnaK PE=2 SV=1)

HSP 1 Score: 228.794 bits (582), Expect = 2.247e-59
Identity = 123/226 (54.42%), Postives = 159/226 (70.35%), Query Frame = 3 
Query:    3 TVFDAKSLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGSTIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIE----EGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEI 668
            T+F  K LIGRRF D  VQ D+ + PFK+IA  AD     V  KG++   A  +IS+ VL KM++ AE YLG  +  AV+TVPAYFND+QRQATKDAG IAGL V RIINEPTAAA+AYGLDK     G + + ++DLGGGTFD+S++ I+    E  FEV AT GDTHLGGEDFD+R++N+ V+EFK+    D+  +P A++RL+ A E+AK  LSS  QT + +
Sbjct:   65 TLFAIKRLIGRRFQDEEVQRDVSIMPFKIIA--ADNGDAWVEVKGQK--MAPPQISAEVLKKMKKTAEDYLGEPVTEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALAYGLDK---GTGNRTIAVYDLGGGTFDISIIEIDEVDGEKTFEVLATNGDTHLGGEDFDSRLINYLVEEFKKDQGIDLRNDPLAMQRLKEAAEKAKIELSSAQQTDVNL 283
[Close]
BLAST of FC868656 vs. ExPASy Swiss-Prot
Match: DNAK_ECOL6 (Chaperone protein dnaK OS=Escherichia coli O6 GN=dnaK PE=2 SV=2)

HSP 1 Score: 228.794 bits (582), Expect = 2.247e-59
Identity = 123/226 (54.42%), Postives = 159/226 (70.35%), Query Frame = 3 
Query:    3 TVFDAKSLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGSTIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIE----EGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEI 668
            T+F  K LIGRRF D  VQ D+ + PFK+IA  AD     V  KG++   A  +IS+ VL KM++ AE YLG  +  AV+TVPAYFND+QRQATKDAG IAGL V RIINEPTAAA+AYGLDK     G + + ++DLGGGTFD+S++ I+    E  FEV AT GDTHLGGEDFD+R++N+ V+EFK+    D+  +P A++RL+ A E+AK  LSS  QT + +
Sbjct:   65 TLFAIKRLIGRRFQDEEVQRDVSIMPFKIIA--ADNGDAWVEVKGQK--MAPPQISAEVLKKMKKTAEDYLGEPVTEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALAYGLDK---GTGNRTIAVYDLGGGTFDISIIEIDEVDGEKTFEVLATNGDTHLGGEDFDSRLINYLVEEFKKDQGIDLRNDPLAMQRLKEAAEKAKIELSSAQQTDVNL 283
[Close]
BLAST of FC868656 vs. ExPASy Swiss-Prot
Match: DNAK_ECOL5 (Chaperone protein dnaK OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=dnaK PE=2 SV=1)

HSP 1 Score: 228.794 bits (582), Expect = 2.247e-59
Identity = 123/226 (54.42%), Postives = 159/226 (70.35%), Query Frame = 3 
Query:    3 TVFDAKSLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGSTIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIE----EGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEI 668
            T+F  K LIGRRF D  VQ D+ + PFK+IA  AD     V  KG++   A  +IS+ VL KM++ AE YLG  +  AV+TVPAYFND+QRQATKDAG IAGL V RIINEPTAAA+AYGLDK     G + + ++DLGGGTFD+S++ I+    E  FEV AT GDTHLGGEDFD+R++N+ V+EFK+    D+  +P A++RL+ A E+AK  LSS  QT + +
Sbjct:   65 TLFAIKRLIGRRFQDEEVQRDVSIMPFKIIA--ADNGDAWVEVKGQK--MAPPQISAEVLKKMKKTAEDYLGEPVTEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALAYGLDK---GTGNRTIAVYDLGGGTFDISIIEIDEVDGEKTFEVLATNGDTHLGGEDFDSRLINYLVEEFKKDQGIDLRNDPLAMQRLKEAAEKAKIELSSAQQTDVNL 283
The following BLAST results are available for this feature:
BLAST of FC868656 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DNAK_SHISS2.247e-5954.42Chaperone protein dnaK OS=Shigella sonnei (strain ... [more]
DNAK_SHIFL2.247e-5954.42Chaperone protein dnaK OS=Shigella flexneri GN=dna... [more]
DNAK_SHIF82.247e-5954.42Chaperone protein dnaK OS=Shigella flexneri seroty... [more]
DNAK_SHIDS2.247e-5954.42Chaperone protein dnaK OS=Shigella dysenteriae ser... [more]
DNAK_SHIBS2.247e-5954.42Chaperone protein dnaK OS=Shigella boydii serotype... [more]
DNAK_ECOUT2.247e-5954.42Chaperone protein dnaK OS=Escherichia coli (strain... [more]
DNAK_ECOLI2.247e-5954.42Chaperone protein dnaK OS=Escherichia coli (strain... [more]
DNAK_ECOLC2.247e-5954.42Chaperone protein dnaK OS=Escherichia coli (strain... [more]
DNAK_ECOL62.247e-5954.42Chaperone protein dnaK OS=Escherichia coli O6 GN=d... [more]
DNAK_ECOL52.247e-5954.42Chaperone protein dnaK OS=Escherichia coli O6:K15:... [more]

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Properties
Property NameValue
Genbank descriptionC31003B06EF AbioticL1 Citrus clementina cDNA clone C31003B06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868656 ID=FC868656; Name=FC868656; organism=Citrus clementina; type=EST; length=710bp
ACACCGTCTTTGATGCAAAGAGCTTGATTGGTAGGAGATTCAGCGATGCA
TCAGTCCAAGGAGATATGAAGCTATGGCCATTTAAGGTGATTGCTGGACC
AGCTGACAAGCCCATGATTGGTGTTAACTACAAGGGCGAAGAGAAGCAGT
TTGCTGCTGAGGAAATCTCGTCTATGGTGCTCATCAAGATGCGTGAGATT
GCCGAGGCTTACCTTGGCTCAACTATTAAGAATGCAGTCGTTACTGTCCC
TGCTTACTTCAATGACTCACAGAGGCAGGCCACCAAGGATGCTGGTGTCA
TTGCTGGGCTTAATGTGATGCGTATCATCAATGAGCCCACTGCTGCTGCC
ATTGCTTATGGCCTTGACAAGAAGGCTACTAGTGTGGGTGAGAAGAATGT
GTTGATCTTTGATTTGGGTGGTGGTACTTTTGATGTGTCGTTGCTCACTA
TTGAGGAGGGAATCTTTGAAGTGAAGGCTACTGCTGGAGACACTCATCTT
GGTGGTGAGGATTTTGATAACAGAATGGTGAATCATTTTGTTCAGGAGTT
TAAGAGGAAGAACAAGAAGGATATTAGTGGCAACCCTAGAGCTCTTAGGA
GATTGAGGACTGCTTGTGAGAGAGCGAAGAGGACTCTCTCCTCTACTGCC
CAGACTACAATTGAGATTGATTCTTTGTATGANGGTATTGACTTTCTACT
CACCATAACT
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