FC868656

Overview
NameFC868656
Unique NameFC868656
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length710
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868656 vs. ExPASy Swiss-Prot
Match: DNAK_RICTY (Chaperone protein dnaK OS=Rickettsia typhi GN=dnaK PE=2 SV=1)

HSP 1 Score: 225.328 bits (573), Expect = 2.484e-58
Identity = 112/222 (50.45%), Postives = 157/222 (70.72%), Query Frame = 3
Query:    3 TVFDAKSLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGSTIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEI 668
            T++  K LIGR F+D  V+ D  L P+ ++        +    + +  +++  +IS+ +L KM+E AE YLG  +  AV+TVPAYFND+QRQATKDAG IAGL V+RIINEPTAAA+AYG +K ++    K + ++DLGGGTFDVS+L I +G+FEVK+T GDT LGGEDFD R++NH +  FK+ +  D+S +P AL+RL+ A E+AK+ LSST+ T I +
Sbjct:   64 TIYAVKRLIGRNFTDPMVRKDQGLVPYNIVKADNGDAWV----EADNNKYSPSQISAFILQKMKETAENYLGEKVTQAVITVPAYFNDAQRQATKDAGKIAGLEVLRIINEPTAAALAYGFEKSSS----KTIAVYDLGGGTFDVSILEISDGVFEVKSTNGDTFLGGEDFDTRILNHLIDVFKKDSGIDLSKDPLALQRLKEAAEKAKKELSSTSATDINL 277          
BLAST of FC868656 vs. ExPASy Swiss-Prot
Match: DNAK_RICFE (Chaperone protein dnaK OS=Rickettsia felis GN=dnaK PE=2 SV=2)

HSP 1 Score: 225.328 bits (573), Expect = 2.484e-58
Identity = 112/222 (50.45%), Postives = 157/222 (70.72%), Query Frame = 3
Query:    3 TVFDAKSLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGSTIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEI 668
            T++  K LIGR F+D  V+ D  L P+ ++        +    + +  +++  +IS+ +L KM+E AE YLG  +  AV+TVPAYFND+QRQATKDAG IAGL V+RIINEPTAAA+AYG +K ++    K + ++DLGGGTFDVS+L I +G+FEVK+T GDT LGGEDFD R++NH +  FK+ +  D+S +P AL+RL+ A E+AK+ LSST+ T I +
Sbjct:   64 TIYAVKRLIGRNFTDPMVRKDQGLVPYNIVKADNGDAWV----EADNNKYSPSQISAFILQKMKETAENYLGEKVTQAVITVPAYFNDAQRQATKDAGKIAGLEVLRIINEPTAAALAYGFEKSSS----KTIAVYDLGGGTFDVSILEISDGVFEVKSTNGDTFLGGEDFDTRILNHLIDVFKKDSGIDLSKDPLALQRLKEAAEKAKKELSSTSATDINL 277          
BLAST of FC868656 vs. ExPASy Swiss-Prot
Match: DNAK_RHORT (Chaperone protein dnaK OS=Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255) GN=dnaK PE=2 SV=1)

HSP 1 Score: 225.328 bits (573), Expect = 2.484e-58
Identity = 115/222 (51.80%), Postives = 160/222 (72.07%), Query Frame = 3
Query:    3 TVFDAKSLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGSTIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEI 668
            T+F  K LIGRR+SD +V+ D  L P++++ G      +    +  ++++A  ++S+ +L KM+E AEA+LG  +  AV+TVPAYFNDSQRQATKDAG IAGL V+RIINEPTAAA+AYG+DKK T      + +FDLGGGTFDVS+L I +G+FEVK+T GDT LGGEDFD R++++   EFK++   D+  +  AL+RL+ A E+AK  LSS+ QT + +
Sbjct:   65 TLFAIKRLIGRRYSDPTVEKDKGLVPYRIVKGDNGDAWV----QTRDEKYAPSQLSAFILQKMKETAEAHLGEPVTQAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAAALAYGMDKKNTG----TIAVFDLGGGTFDVSVLEIGDGVFEVKSTNGDTFLGGEDFDARIIDYLASEFKKEQGIDLRTDRLALQRLKEAAEKAKIELSSSMQTEVNL 278          
BLAST of FC868656 vs. ExPASy Swiss-Prot
Match: DNAK_MANSM (Chaperone protein dnaK OS=Mannheimia succiniciproducens (strain MBEL55E) GN=dnaK PE=2 SV=2)

HSP 1 Score: 225.328 bits (573), Expect = 2.484e-58
Identity = 122/226 (53.98%), Postives = 160/226 (70.80%), Query Frame = 3
Query:    3 TVFDAKSLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGSTIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIE----EGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEI 668
            T+F  K LIGRRF D  VQ D+ + PF++I   AD     V+ KG++   A  +IS+ VL KM++ AE +LG T+  AV+TVPAYFND+QRQATKDAG IAGL V RIINEPTAAA+AYGLDK     G + + ++DLGGGTFD+S++ I+    E  FEV AT GDTHLGGEDFDNR++N+ V EFK++   D+  +P A++RL+ A E+AK  LSS  QT + +
Sbjct:   65 TLFAIKRLIGRRFEDQEVQRDVNIMPFQIIK--ADNGDAWVDVKGDK--LAPPQISAEVLKKMKKTAEDFLGETVTEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALAYGLDK---GKGNQTIAVYDLGGGTFDLSIIEIDEVGGEKTFEVLATNGDTHLGGEDFDNRVINYLVDEFKKEQGVDLRNDPLAMQRLKEAGEKAKIELSSAQQTDVNL 283          
BLAST of FC868656 vs. ExPASy Swiss-Prot
Match: DNAK_SHEAM (Chaperone protein dnaK OS=Shewanella amazonensis (strain ATCC BAA-1098 / SB2B) GN=dnaK PE=2 SV=1)

HSP 1 Score: 224.942 bits (572), Expect = 3.244e-58
Identity = 121/226 (53.54%), Postives = 159/226 (70.35%), Query Frame = 3
Query:    3 TVFDAKSLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGSTIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIE----EGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEI 668
            T F  K LIGRRF D  VQ D+ + PFK+I   AD     V  +G  K+ A  ++S+ VL KM++ AE +LG  +  AV+TVPAYFND+QRQATKDAG IAGL+V RIINEPTAAA+AYG+DKK    G+  V ++DLGGGTFD+S++ I+    +  FEV AT GDTHLGGEDFDNR++N+   EFK++   D+  +P A++RL+ A E+AK  LSST QT + +
Sbjct:   64 TFFAIKRLIGRRFKDDEVQRDVNIMPFKIIQ--ADNGDAWVESRG--KKMAPPQVSAEVLKKMKKTAEDFLGEEVTEAVITVPAYFNDAQRQATKDAGRIAGLDVKRIINEPTAAALAYGIDKKQ---GDNIVAVYDLGGGTFDISIIEIDNNDGDQTFEVLATNGDTHLGGEDFDNRLINYLADEFKKEQGLDLRNDPLAMQRLKEAAEKAKIELSSTNQTEVNL 282          
BLAST of FC868656 vs. ExPASy Swiss-Prot
Match: DNAK_RICRS (Chaperone protein dnaK OS=Rickettsia rickettsii (strain Sheila Smith) GN=dnaK PE=2 SV=1)

HSP 1 Score: 224.942 bits (572), Expect = 3.244e-58
Identity = 112/222 (50.45%), Postives = 155/222 (69.82%), Query Frame = 3
Query:    3 TVFDAKSLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGSTIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEI 668
            T++  K LIGR F D  V+ D  + P+ ++        +    + +  +++  +IS+ +L KM+E AE YLG  +  AV+TVPAYFND+QRQATKDAG IAGL V+RIINEPTAAA+AYG +K A+    K + ++DLGGGTFDVS+L I +G+FEVK+T GDT LGGEDFD R++NH +  FK++N  D+S +P AL+RL+ A E+AK+ LSS   T I +
Sbjct:   64 TIYAVKRLIGRNFIDPMVRKDQGIVPYNIVKADNGDAWV----EADNNKYSPSQISAFILQKMKETAENYLGDKVTQAVITVPAYFNDAQRQATKDAGKIAGLEVLRIINEPTAAALAYGFEKSAS----KTIAVYDLGGGTFDVSILEISDGVFEVKSTNGDTFLGGEDFDTRILNHLIDVFKKENGIDLSKDPLALQRLKEAAEKAKKELSSAVTTDINL 277          
BLAST of FC868656 vs. ExPASy Swiss-Prot
Match: DNAK_RICRO (Chaperone protein dnaK OS=Rickettsia rickettsii (strain Iowa) GN=dnaK PE=2 SV=1)

HSP 1 Score: 224.942 bits (572), Expect = 3.244e-58
Identity = 112/222 (50.45%), Postives = 155/222 (69.82%), Query Frame = 3
Query:    3 TVFDAKSLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGSTIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEI 668
            T++  K LIGR F D  V+ D  + P+ ++        +    + +  +++  +IS+ +L KM+E AE YLG  +  AV+TVPAYFND+QRQATKDAG IAGL V+RIINEPTAAA+AYG +K A+    K + ++DLGGGTFDVS+L I +G+FEVK+T GDT LGGEDFD R++NH +  FK++N  D+S +P AL+RL+ A E+AK+ LSS   T I +
Sbjct:   64 TIYAVKRLIGRNFIDPMVRKDQGIVPYNIVKADNGDAWV----EADNNKYSPSQISAFILQKMKETAENYLGDKVTQAVITVPAYFNDAQRQATKDAGKIAGLEVLRIINEPTAAALAYGFEKSAS----KTIAVYDLGGGTFDVSILEISDGVFEVKSTNGDTFLGGEDFDTRILNHLIDVFKKENGIDLSKDPLALQRLKEAAEKAKKELSSAVTTDINL 277          
BLAST of FC868656 vs. ExPASy Swiss-Prot
Match: DNAK_METS4 (Chaperone protein dnaK OS=Methylobacterium sp. (strain 4-46) GN=dnaK PE=2 SV=1)

HSP 1 Score: 224.942 bits (572), Expect = 3.244e-58
Identity = 121/223 (54.26%), Postives = 156/223 (69.96%), Query Frame = 3
Query:    3 TVFDAKSLIGRRFSDASVQGDMKLWPFKVI-AGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGSTIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEI 668
            T F  K LIGR + D   Q D  L P+ ++ AG  D  +     + + KQF+  +IS+  L KM+E AE+YLG  +  AV+TVPAYFND+QRQATKDAG IAGL V+RIINEPTAAA+AYGLDKK + V    + ++DLGGGTFDVS+L I +G+FEVK+T GDT LGGEDFDNR+V +   EFKR+   D++ +  AL+RL+ A E+AK  LSS  QT I +
Sbjct:   65 TFFAIKRLIGRTYDDPMTQKDKGLVPYHIVRAGNGDAWV-----EADGKQFSPSQISAFTLQKMKETAESYLGQPVTQAVITVPAYFNDAQRQATKDAGKIAGLEVLRIINEPTAAALAYGLDKKKSGV----IAVYDLGGGTFDVSILEIGDGVFEVKSTNGDTFLGGEDFDNRIVEYLAAEFKREQGIDLTRDKLALQRLKEAAEKAKIELSSATQTEINL 278          
BLAST of FC868656 vs. ExPASy Swiss-Prot
Match: DNAK_CAUCR (Chaperone protein dnaK OS=Caulobacter crescentus GN=dnaK PE=2 SV=2)

HSP 1 Score: 224.942 bits (572), Expect = 3.244e-58
Identity = 116/222 (52.25%), Postives = 156/222 (70.27%), Query Frame = 3
Query:    3 TVFDAKSLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGSTIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEI 668
            T+F  K LIGR  SD  V+ D  + P++++ GP     +    K   K ++ +E+S+ +L KM+E AEA+LG  +  AV+TVPAYFND+QRQATKDAG IAGL V+RIINEPTAAA+AYGLDK       K + ++DLGGGTFDVS+L I +G+FEVK+T GDT LGGEDFD R+V++   EFK++   D+  +  AL+RLR   E+AK+ LSSTAQ  + +
Sbjct:   65 TLFAIKRLIGRTASDPVVEKDKGMVPYEIVKGPTGDAWV----KAHGKDYSPQEVSAFILQKMKEAAEAHLGEPVTKAVITVPAYFNDAQRQATKDAGKIAGLEVLRIINEPTAAALAYGLDKN----DGKKIAVYDLGGGTFDVSILEIGDGVFEVKSTNGDTFLGGEDFDLRIVDYLADEFKKEQGVDLRKDKLALQRLREEAEKAKKELSSTAQYEVNL 278          
BLAST of FC868656 vs. ExPASy Swiss-Prot
Match: DNAK_AGRVS (Chaperone protein dnaK OS=Agrobacterium vitis (strain S4 / ATCC BAA-846) GN=dnaK PE=2 SV=1)

HSP 1 Score: 224.942 bits (572), Expect = 3.244e-58
Identity = 118/222 (53.15%), Postives = 156/222 (70.27%), Query Frame = 3
Query:    3 TVFDAKSLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGSTIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEI 668
            T+F  K LIGRR+ D +V+ D  L PF +I G      +    KG    ++  +IS+M+L KM+E AEAYLG  ++ AV+TVPAYFND+QRQATKDAG IAGL V+RIINEPTAAA+AYGLDK       K + ++DLGGGTFD+S+L I +G+FEVK+T GDT LGGEDFD R+V +   EFK++   ++  +  AL+RL+ A E+AK  LSS+ QT I +
Sbjct:   65 TLFAVKRLIGRRYEDPTVEKDKGLVPFPIIKGDNGDAWVEAQGKG----YSPAQISAMILQKMKETAEAYLGEKVEKAVITVPAYFNDAQRQATKDAGRIAGLEVLRIINEPTAAALAYGLDK----TEGKTIAVYDLGGGTFDISVLEIGDGVFEVKSTNGDTFLGGEDFDMRLVEYLAAEFKKEQGIELKNDKLALQRLKEAAEKAKIELSSSQQTEINL 278          
The following BLAST results are available for this feature:
BLAST of FC868656 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DNAK_RICTY2.484e-5850.45Chaperone protein dnaK OS=Rickettsia typhi GN=dnaK... [more]
DNAK_RICFE2.484e-5850.45Chaperone protein dnaK OS=Rickettsia felis GN=dnaK... [more]
DNAK_RHORT2.484e-5851.80Chaperone protein dnaK OS=Rhodospirillum rubrum (s... [more]
DNAK_MANSM2.484e-5853.98Chaperone protein dnaK OS=Mannheimia succiniciprod... [more]
DNAK_SHEAM3.244e-5853.54Chaperone protein dnaK OS=Shewanella amazonensis (... [more]
DNAK_RICRS3.244e-5850.45Chaperone protein dnaK OS=Rickettsia rickettsii (s... [more]
DNAK_RICRO3.244e-5850.45Chaperone protein dnaK OS=Rickettsia rickettsii (s... [more]
DNAK_METS43.244e-5854.26Chaperone protein dnaK OS=Methylobacterium sp. (st... [more]
DNAK_CAUCR3.244e-5852.25Chaperone protein dnaK OS=Caulobacter crescentus G... [more]
DNAK_AGRVS3.244e-5853.15Chaperone protein dnaK OS=Agrobacterium vitis (str... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC31003B06EF AbioticL1 Citrus clementina cDNA clone C31003B06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868656 ID=FC868656; Name=FC868656; organism=Citrus clementina; type=EST; length=710bp
ACACCGTCTTTGATGCAAAGAGCTTGATTGGTAGGAGATTCAGCGATGCA
TCAGTCCAAGGAGATATGAAGCTATGGCCATTTAAGGTGATTGCTGGACC
AGCTGACAAGCCCATGATTGGTGTTAACTACAAGGGCGAAGAGAAGCAGT
TTGCTGCTGAGGAAATCTCGTCTATGGTGCTCATCAAGATGCGTGAGATT
GCCGAGGCTTACCTTGGCTCAACTATTAAGAATGCAGTCGTTACTGTCCC
TGCTTACTTCAATGACTCACAGAGGCAGGCCACCAAGGATGCTGGTGTCA
TTGCTGGGCTTAATGTGATGCGTATCATCAATGAGCCCACTGCTGCTGCC
ATTGCTTATGGCCTTGACAAGAAGGCTACTAGTGTGGGTGAGAAGAATGT
GTTGATCTTTGATTTGGGTGGTGGTACTTTTGATGTGTCGTTGCTCACTA
TTGAGGAGGGAATCTTTGAAGTGAAGGCTACTGCTGGAGACACTCATCTT
GGTGGTGAGGATTTTGATAACAGAATGGTGAATCATTTTGTTCAGGAGTT
TAAGAGGAAGAACAAGAAGGATATTAGTGGCAACCCTAGAGCTCTTAGGA
GATTGAGGACTGCTTGTGAGAGAGCGAAGAGGACTCTCTCCTCTACTGCC
CAGACTACAATTGAGATTGATTCTTTGTATGANGGTATTGACTTTCTACT
CACCATAACT
back to top