FC868656

Overview
NameFC868656
Unique NameFC868656
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length710
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868656 vs. ExPASy Swiss-Prot
Match: DNAK_RHOS7 (Chaperone protein dnaK OS=Rhodopseudomonas sp. (strain No.7) GN=dnaK PE=2 SV=1)

HSP 1 Score: 222.246 bits (565), Expect = 2.103e-57
Identity = 115/222 (51.80%), Postives = 154/222 (69.37%), Query Frame = 3
Query:    3 TVFDAKSLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGSTIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEI 668
            T F  K LIGRR+ D  V+ D  L P+K++        +    + + K ++  ++S+ +L KM+E AEA+LG  +  AV+TVPAYFND+QRQATKDAG IAGL V+RIINEPTAAA+AYGLDK  T      + ++DLGGGTFDVS+L I +G+FEVK+T GDT LGGEDFD R+VN+   EF+++   D+  +  AL+RL+ A E+AK  LSST QT I +
Sbjct:   65 TFFAVKRLIGRRYDDPMVEKDKGLVPYKIVKASNGDAWV----EADGKTYSPSQVSAFILQKMKETAEAHLGQKVDQAVITVPAYFNDAQRQATKDAGKIAGLEVLRIINEPTAAALAYGLDKAKTG----TIAVYDLGGGTFDVSILEIGDGVFEVKSTNGDTFLGGEDFDMRLVNYLADEFQKEQGIDLRKDKLALQRLKEAAEKAKIELSSTTQTEINL 278          
BLAST of FC868656 vs. ExPASy Swiss-Prot
Match: DNAK_RHOPT (Chaperone protein dnaK OS=Rhodopseudomonas palustris (strain TIE-1) GN=dnaK PE=2 SV=1)

HSP 1 Score: 222.246 bits (565), Expect = 2.103e-57
Identity = 115/222 (51.80%), Postives = 154/222 (69.37%), Query Frame = 3
Query:    3 TVFDAKSLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGSTIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEI 668
            T F  K LIGRR+ D  V+ D  L P+K++        +    + + K ++  ++S+ +L KM+E AEA+LG  +  AV+TVPAYFND+QRQATKDAG IAGL V+RIINEPTAAA+AYGLDK  T      + ++DLGGGTFDVS+L I +G+FEVK+T GDT LGGEDFD R+VN+   EF+++   D+  +  AL+RL+ A E+AK  LSST QT I +
Sbjct:   65 TFFAVKRLIGRRYDDPMVEKDKGLVPYKIVKASNGDAWV----EADGKTYSPSQVSAFILQKMKETAEAHLGQKVDQAVITVPAYFNDAQRQATKDAGKIAGLEVLRIINEPTAAALAYGLDKAKTG----TIAVYDLGGGTFDVSILEIGDGVFEVKSTNGDTFLGGEDFDMRLVNYLADEFQKEQGIDLRKDKLALQRLKEAAEKAKIELSSTTQTEINL 278          
BLAST of FC868656 vs. ExPASy Swiss-Prot
Match: DNAK_RHOPA (Chaperone protein dnaK OS=Rhodopseudomonas palustris GN=dnaK PE=2 SV=1)

HSP 1 Score: 222.246 bits (565), Expect = 2.103e-57
Identity = 115/222 (51.80%), Postives = 154/222 (69.37%), Query Frame = 3
Query:    3 TVFDAKSLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGSTIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEI 668
            T F  K LIGRR+ D  V+ D  L P+K++        +    + + K ++  ++S+ +L KM+E AEA+LG  +  AV+TVPAYFND+QRQATKDAG IAGL V+RIINEPTAAA+AYGLDK  T      + ++DLGGGTFDVS+L I +G+FEVK+T GDT LGGEDFD R+VN+   EF+++   D+  +  AL+RL+ A E+AK  LSST QT I +
Sbjct:   65 TFFAVKRLIGRRYDDPMVEKDKGLVPYKIVKASNGDAWV----EADGKTYSPSQVSAFILQKMKETAEAHLGQKVDQAVITVPAYFNDAQRQATKDAGKIAGLEVLRIINEPTAAALAYGLDKAKTG----TIAVYDLGGGTFDVSILEIGDGVFEVKSTNGDTFLGGEDFDMRLVNYLADEFQKEQGIDLRKDKLALQRLKEAAEKAKIELSSTTQTEINL 278          
BLAST of FC868656 vs. ExPASy Swiss-Prot
Match: DNAK_MARMM (Chaperone protein dnaK OS=Maricaulis maris (strain MCS10) GN=dnaK PE=2 SV=1)

HSP 1 Score: 222.246 bits (565), Expect = 2.103e-57
Identity = 115/223 (51.57%), Postives = 157/223 (70.40%), Query Frame = 3
Query:    3 TVFDAKSLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGSTIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGE-KNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEI 668
            T F  K LIGR   D +V+ D+ + P+K++   ++   +    +G +K+++  EIS+  L KM+E AE+YLG  ++ AV+TVPAYF+D+QRQATKDAG IAGL V+RIINEPTAAA+AYGLDK     GE K + +FDLGGGTFDVS+L I +G+FEVKAT GDT LGGEDFD R+V +   EFK++N  D+  +  AL+RL+   E+AK+ LSS     + +
Sbjct:   65 TFFAIKRLIGRMMDDPTVKKDIDMVPYKIVPSDSNDAWV----QGRDKKYSPSEISAFTLQKMKETAESYLGEKVEKAVITVPAYFDDAQRQATKDAGKIAGLEVLRIINEPTAAALAYGLDK-----GENKTIAVFDLGGGTFDVSVLEIGDGVFEVKATNGDTFLGGEDFDMRIVQYLADEFKKENGIDLKSDKLALQRLKEEAEKAKKELSSATSYEVNL 278          
BLAST of FC868656 vs. ExPASy Swiss-Prot
Match: DNAK_GLUOX (Chaperone protein dnaK OS=Gluconobacter oxydans GN=dnaK PE=2 SV=1)

HSP 1 Score: 222.246 bits (565), Expect = 2.103e-57
Identity = 116/222 (52.25%), Postives = 158/222 (71.17%), Query Frame = 3
Query:    3 TVFDAKSLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGSTIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEI 668
            T++  K LIGRR+ D +VQ D ++ P+ ++ G  D     V  +GE+  +A  +I++ VL KM+E AE+YLG T+  AV+TVPAYFND+QRQAT+DAG IAGL V+RIINEPTAAA+AYGL K+ +      V ++DLGGGTFDVS+L I +G+ EVK+T GDT LGGEDFDNR++     EFK+    D+ G+  AL+RL+ A E+AK  LSS+ +T I +
Sbjct:   65 TLYAVKRLIGRRYDDPTVQKDKEMVPYAIVRG--DNGDAWVEARGEK--YAPSQIAAYVLGKMKETAESYLGETVSQAVITVPAYFNDAQRQATRDAGKIAGLEVLRIINEPTAAALAYGLGKRDSG----TVAVYDLGGGTFDVSILEISDGVIEVKSTNGDTFLGGEDFDNRIIGFLADEFKKDQGIDLRGDKLALQRLKEAAEKAKIELSSSKETEINL 278          
BLAST of FC868656 vs. ExPASy Swiss-Prot
Match: DNAK_XANP2 (Chaperone protein dnaK OS=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) GN=dnaK PE=2 SV=1)

HSP 1 Score: 221.861 bits (564), Expect = 2.747e-57
Identity = 118/222 (53.15%), Postives = 156/222 (70.27%), Query Frame = 3
Query:    3 TVFDAKSLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGSTIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEI 668
            T F  K LIGRR+ D +V+ D  L P+ ++   AD     V   G  K+++  +IS+ VL KM+E AE++LG  ++ AV+TVPAYFND+QRQATKDAG IAGL V+RIINEPTAAA+AYGLDKK+       + ++DLGGGTFDVS+L I +G+FEVK+T GDT LGGEDFD R+V +   EFK++   D+  +  AL+RL+ A E+AK  LSS  QT I +
Sbjct:   65 TFFAVKRLIGRRYDDPTVEKDKHLVPYSIVR--ADNGDAWVEADG--KKYSPSQISAFVLQKMKETAESFLGEKVEKAVITVPAYFNDAQRQATKDAGRIAGLEVLRIINEPTAAALAYGLDKKSAG----TIAVYDLGGGTFDVSVLEIGDGVFEVKSTNGDTFLGGEDFDMRLVTYLADEFKKEQGIDLRNDKLALQRLKEAAEKAKIELSSATQTEINL 278          
BLAST of FC868656 vs. ExPASy Swiss-Prot
Match: DNAK_WOLTR (Chaperone protein dnaK OS=Wolbachia sp. subsp. Brugia malayi (strain TRS) GN=dnaK PE=2 SV=1)

HSP 1 Score: 221.861 bits (564), Expect = 2.747e-57
Identity = 115/222 (51.80%), Postives = 158/222 (71.17%), Query Frame = 3
Query:    3 TVFDAKSLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGSTIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEI 668
            T F  K LIGR++ D  ++ D+ + P+KV A       I      + K+++  +I + +L  ++E AEAYLG  +K+AV+TVPAYFNDSQRQATKDAG IAGLNV+RI+NEPTAAA+AYGLDKK        ++++DLGGGTFDVS+L I +G+FEVKAT GDTHLGGEDFDN +V++ + EFK+ N   +  +P A++R++ A E+AK  LSS  +T I +
Sbjct:   61 TFFATKRLIGRQYGDPEMK-DLNV-PYKVFAAKNGDAWIKTT---DGKEYSPSQIGAFILQNLKEAAEAYLGEEVKDAVITVPAYFNDSQRQATKDAGKIAGLNVLRIVNEPTAAALAYGLDKK----HGHTIVVYDLGGGTFDVSILEIGDGVFEVKATNGDTHLGGEDFDNAIVSYLLDEFKKSNGIGLKNDPMAMQRIKEAAEKAKIELSSAMETEINL 273          
BLAST of FC868656 vs. ExPASy Swiss-Prot
Match: DNAK_SHEFN (Chaperone protein dnaK OS=Shewanella frigidimarina (strain NCIMB 400) GN=dnaK PE=2 SV=1)

HSP 1 Score: 221.861 bits (564), Expect = 2.747e-57
Identity = 120/226 (53.10%), Postives = 156/226 (69.03%), Query Frame = 3
Query:    3 TVFDAKSLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGSTIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIE----EGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEI 668
            T F  K LIGRRF D  VQ D+ + PFK+I   AD     V  +G +   A  ++S+ +L KM++ AE +LG  +  AV+TVPAYFNDSQRQATKDAG IAGL+V RIINEPTAAA+AYG+DKK    G+  V ++DLGGGTFD+S++ I+    +  FEV AT GDTHLGGEDFDNRM+N+   EFK+    D+  +P A++RL+ A E+AK  LSST  T + +
Sbjct:   64 TFFAIKRLIGRRFKDDEVQRDVNIMPFKIIG--ADNGDAWVESRGNK--MAPPQVSAEILKKMKKTAEDFLGEEVTEAVITVPAYFNDSQRQATKDAGRIAGLDVKRIINEPTAAALAYGIDKKQ---GDNIVAVYDLGGGTFDISIIEIDSNDGDQTFEVLATNGDTHLGGEDFDNRMINYLADEFKKDQGLDLRRDPLAMQRLKEAAEKAKIELSSTNHTEVNL 282          
BLAST of FC868656 vs. ExPASy Swiss-Prot
Match: DNAK_RHOPS (Chaperone protein dnaK OS=Rhodopseudomonas palustris (strain BisB5) GN=dnaK PE=2 SV=1)

HSP 1 Score: 221.861 bits (564), Expect = 2.747e-57
Identity = 113/222 (50.90%), Postives = 155/222 (69.82%), Query Frame = 3
Query:    3 TVFDAKSLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGSTIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEI 668
            T F  K L+GRR+ D  V+ D KL P+K++        +    + + + ++  ++S+ +L KM+E AEA+LG  +  AV+TVPAYFND+QRQATKDAG IAGL V+RIINEPTAAA+AYGLDK  T      + ++DLGGGTFDVS+L I +G+FEVK+T GDT LGGEDFD R+VN+   EF+++   ++  +  AL+RL+ A E+AK  LSST QT I +
Sbjct:   65 TFFAVKRLVGRRYDDPMVEKDKKLVPYKIVKASNGDAWV----EADGQTYSPSQVSAFILQKMKETAEAHLGQKVDQAVITVPAYFNDAQRQATKDAGKIAGLEVLRIINEPTAAALAYGLDKTKTG----TIAVYDLGGGTFDVSILEIGDGVFEVKSTNGDTFLGGEDFDMRLVNYLADEFQKEQGINLRNDKLALQRLKEAAEKAKIELSSTTQTEINL 278          
BLAST of FC868656 vs. ExPASy Swiss-Prot
Match: DNAK_RHOPB (Chaperone protein dnaK OS=Rhodopseudomonas palustris (strain BisB18) GN=dnaK PE=2 SV=1)

HSP 1 Score: 221.861 bits (564), Expect = 2.747e-57
Identity = 113/222 (50.90%), Postives = 156/222 (70.27%), Query Frame = 3
Query:    3 TVFDAKSLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGSTIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEI 668
            T F  K L+GRR+ D  V+ D KL P+K++        +    + + K ++  ++S+ +L KM+E AEA+LG+ +  AV+TVPAYFND+QRQATKDAG IAGL V+RIINEPTAAA+AYGLDK    V    + ++DLGGGTFDVS+L I +G+FEVK+T GDT LGGEDFD R+V++   EF+++   ++  +  AL+RL+ A E+AK  LSST QT I +
Sbjct:   65 TFFAVKRLVGRRYDDPMVEKDKKLVPYKIVKASNGDAWV----EADAKTYSPSQVSAFILQKMKETAEAHLGAKVDQAVITVPAYFNDAQRQATKDAGKIAGLEVLRIINEPTAAALAYGLDKAKAGV----IAVYDLGGGTFDVSILEIGDGVFEVKSTNGDTFLGGEDFDMRLVSYLADEFQKEQGINLRNDKLALQRLKEAAEKAKIELSSTTQTEINL 278          
The following BLAST results are available for this feature:
BLAST of FC868656 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DNAK_RHOS72.103e-5751.80Chaperone protein dnaK OS=Rhodopseudomonas sp. (st... [more]
DNAK_RHOPT2.103e-5751.80Chaperone protein dnaK OS=Rhodopseudomonas palustr... [more]
DNAK_RHOPA2.103e-5751.80Chaperone protein dnaK OS=Rhodopseudomonas palustr... [more]
DNAK_MARMM2.103e-5751.57Chaperone protein dnaK OS=Maricaulis maris (strain... [more]
DNAK_GLUOX2.103e-5752.25Chaperone protein dnaK OS=Gluconobacter oxydans GN... [more]
DNAK_XANP22.747e-5753.15Chaperone protein dnaK OS=Xanthobacter autotrophic... [more]
DNAK_WOLTR2.747e-5751.80Chaperone protein dnaK OS=Wolbachia sp. subsp. Bru... [more]
DNAK_SHEFN2.747e-5753.10Chaperone protein dnaK OS=Shewanella frigidimarina... [more]
DNAK_RHOPS2.747e-5750.90Chaperone protein dnaK OS=Rhodopseudomonas palustr... [more]
DNAK_RHOPB2.747e-5750.90Chaperone protein dnaK OS=Rhodopseudomonas palustr... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC31003B06EF AbioticL1 Citrus clementina cDNA clone C31003B06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868656 ID=FC868656; Name=FC868656; organism=Citrus clementina; type=EST; length=710bp
ACACCGTCTTTGATGCAAAGAGCTTGATTGGTAGGAGATTCAGCGATGCA
TCAGTCCAAGGAGATATGAAGCTATGGCCATTTAAGGTGATTGCTGGACC
AGCTGACAAGCCCATGATTGGTGTTAACTACAAGGGCGAAGAGAAGCAGT
TTGCTGCTGAGGAAATCTCGTCTATGGTGCTCATCAAGATGCGTGAGATT
GCCGAGGCTTACCTTGGCTCAACTATTAAGAATGCAGTCGTTACTGTCCC
TGCTTACTTCAATGACTCACAGAGGCAGGCCACCAAGGATGCTGGTGTCA
TTGCTGGGCTTAATGTGATGCGTATCATCAATGAGCCCACTGCTGCTGCC
ATTGCTTATGGCCTTGACAAGAAGGCTACTAGTGTGGGTGAGAAGAATGT
GTTGATCTTTGATTTGGGTGGTGGTACTTTTGATGTGTCGTTGCTCACTA
TTGAGGAGGGAATCTTTGAAGTGAAGGCTACTGCTGGAGACACTCATCTT
GGTGGTGAGGATTTTGATAACAGAATGGTGAATCATTTTGTTCAGGAGTT
TAAGAGGAAGAACAAGAAGGATATTAGTGGCAACCCTAGAGCTCTTAGGA
GATTGAGGACTGCTTGTGAGAGAGCGAAGAGGACTCTCTCCTCTACTGCC
CAGACTACAATTGAGATTGATTCTTTGTATGANGGTATTGACTTTCTACT
CACCATAACT
back to top