FC868656

Overview
NameFC868656
Unique NameFC868656
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length710
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868656 vs. ExPASy Swiss-Prot
Match: DNAK_ALCBS (Chaperone protein dnaK OS=Alcanivorax borkumensis (strain SK2 / ATCC 700651 / DSM 11573) GN=dnaK PE=2 SV=1)

HSP 1 Score: 218.009 bits (554), Expect = 3.966e-56
Identity = 120/226 (53.10%), Postives = 155/226 (68.58%), Query Frame = 3
Query:    3 TVFDAKSLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGSTIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIE----EGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEI 668
            T++  K LIGRRF D  VQ D+K+ P+K+    AD     V  KGE+   A  +IS+ VL KM++ AE YLG  +  AV+TVPAYFNDSQRQATKDAG IAGL+V RIINEPTAAA+AYGLDKK    G++ + ++DLGGGTFD+S++ I     E  FEV AT GDT LGGEDFD  ++N    +FK  +  D+ G+P A++RL+ A E+AK  LSS  QT + +
Sbjct:   65 TLYAVKRLIGRRFDDKVVQKDIKMVPYKITK--ADNGDAWVEVKGEK--MAPPQISAQVLKKMKKTAEDYLGEAVTEAVITVPAYFNDSQRQATKDAGRIAGLDVKRIINEPTAAALAYGLDKKG---GDRTIAVYDLGGGTFDISIIEIAEVDGEHQFEVLATNGDTFLGGEDFDLALINFLADQFKADSGIDLGGDPLAMQRLKEAAEKAKIELSSAEQTEVNL 283          
BLAST of FC868656 vs. ExPASy Swiss-Prot
Match: DNAK_RHOBA (Chaperone protein dnaK OS=Rhodopirellula baltica GN=dnaK PE=2 SV=2)

HSP 1 Score: 217.624 bits (553), Expect = 5.180e-56
Identity = 113/230 (49.13%), Postives = 160/230 (69.57%), Query Frame = 3
Query:    3 TVFDAKSLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGSTIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTI--------EEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEI 668
            TV+ AK  +GRR ++  VQ + K+ P+ +  GP D   I V     + ++  +EIS+ VL K++E AE+YLG  +  AV+TVPAYFND+QRQATKDAG IAGL V RIINEPTAAA+AYGLDKK     ++++++FDLGGGTFDVS+L +        E  +F+V +T+GDTHLGG+DFD  ++N+   EF++ N  D+  +  AL+RL+ ACE+AK+ LS+  +T I +
Sbjct:   68 TVYSAKRFMGRRHNE--VQSEEKMVPYGITGGPGDYVKIQVG----DSEYTPQEISAKVLRKLKESAESYLGHKVNKAVITVPAYFNDAQRQATKDAGQIAGLEVARIINEPTAAALAYGLDKKK----DESIIVFDLGGGTFDVSVLEVADSGDEEQESRVFQVVSTSGDTHLGGDDFDEALINYVASEFQKDNGIDLRNDAMALQRLQEACEKAKKELSTLPETDINL 287          
BLAST of FC868656 vs. ExPASy Swiss-Prot
Match: DNAK_OLICO (Chaperone protein dnaK OS=Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5) GN=dnaK PE=2 SV=1)

HSP 1 Score: 217.624 bits (553), Expect = 5.180e-56
Identity = 113/222 (50.90%), Postives = 154/222 (69.37%), Query Frame = 3
Query:    3 TVFDAKSLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGSTIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEI 668
            T+F  K LIGRR+ D +V  D  L P+K++        +    + + K ++  +IS+ +L KM+E AEA+LG  +  AV+TVPAYFND+QRQATKDAG IAGL V+RIINEPTAAA+AYGLDK      +  + ++DLGGGTFDVS+L I +G+FEVK+T GDT LGGEDFD R+V +   EF+++   ++  +  AL+RL+ A E+AK  LSST QT I +
Sbjct:   65 TIFAVKRLIGRRYDDPTVAKDKDLVPYKIVKASNGDAWV----EADGKIYSPSQISAFILQKMKETAEAHLGQKVDQAVITVPAYFNDAQRQATKDAGKIAGLEVLRIINEPTAAALAYGLDK----AKQGTIAVYDLGGGTFDVSVLEIGDGVFEVKSTNGDTFLGGEDFDMRLVGYLADEFQKEQGINLRNDKLALQRLKEAAEKAKIELSSTTQTEINL 278          
BLAST of FC868656 vs. ExPASy Swiss-Prot
Match: DNAK_NITHX (Chaperone protein dnaK OS=Nitrobacter hamburgensis (strain X14 / DSM 10229) GN=dnaK PE=2 SV=1)

HSP 1 Score: 217.624 bits (553), Expect = 5.180e-56
Identity = 114/222 (51.35%), Postives = 154/222 (69.37%), Query Frame = 3
Query:    3 TVFDAKSLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGSTIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEI 668
            T+F  K LIGRR+ D +V+ D  L P+K+         + V    + K ++  +IS+  L KM+E AEA+LG  +  AV+TVPAYFND+QRQATKDAG IAGL V+RIINEPTAAA+AYGLDK      +  + ++DLGGGTFDVS+L I +G+FEVK+T GDT LGGEDFD R+V++   EF+++   ++  +  AL+RL+ A E+AK  LSST QT I +
Sbjct:   65 TIFAVKRLIGRRYDDPTVEKDKHLVPYKIAKAGNGDAWVEV----DGKTYSPSQISAFTLQKMKETAEAHLGQKVDQAVITVPAYFNDAQRQATKDAGKIAGLEVLRIINEPTAAALAYGLDK----AKQGTIAVYDLGGGTFDVSILEIGDGVFEVKSTNGDTFLGGEDFDMRLVSYLADEFQKEQGINLRNDKLALQRLKEAAEKAKIELSSTTQTEINL 278          
BLAST of FC868656 vs. ExPASy Swiss-Prot
Match: DNAK_MARMS (Chaperone protein dnaK OS=Marinomonas sp. (strain MWYL1) GN=dnaK PE=2 SV=1)

HSP 1 Score: 217.624 bits (553), Expect = 5.180e-56
Identity = 121/226 (53.54%), Postives = 158/226 (69.91%), Query Frame = 3
Query:    3 TVFDAKSLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGSTIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIE----EGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEI 668
            T+F  K LIGR+F D  VQ D+ + P+K+IA  AD     V  KG++K  A  +IS+ VL KM++ AE YLG  +  AV+TVPAYFNDSQRQATKDAG IAGL V RIINEPTAAA+AYGLDK   S G+  + ++DLGGGTFD+S++ I     E  FEV +T GDT LGGEDFD R++ +   EFK+ +  D+  +P AL+RL+ A E+AK  LSS++QT + +
Sbjct:   65 TLFAVKRLIGRKFKDDVVQKDISMVPYKIIA--ADNGDAWVEVKGDKK--APPQISAEVLKKMKKTAEDYLGEKVTEAVITVPAYFNDSQRQATKDAGKIAGLEVKRIINEPTAAALAYGLDK---SSGDSTIAVYDLGGGTFDISIIEIADVDGEKQFEVLSTNGDTFLGGEDFDMRVIEYLAAEFKKSSGIDLHNDPLALQRLKEAGEKAKVELSSSSQTEVNL 283          
BLAST of FC868656 vs. ExPASy Swiss-Prot
Match: DNAK_DESVM (Chaperone protein dnaK OS=Desulfovibrio vulgaris (strain Miyazaki F / DSM 19637) GN=dnaK PE=2 SV=1)

HSP 1 Score: 217.624 bits (553), Expect = 5.180e-56
Identity = 110/222 (49.55%), Postives = 159/222 (71.62%), Query Frame = 3
Query:    3 TVFDAKSLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGSTIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEI 668
            TVF  K L+GR+     V       P++++AG      + V    + +Q++A E+S+M+L K++  AEAYLG T+ +AV+TVPAYFND+QRQATKDAG IAGL+V RIINEPTAA++AYG D+K      + + +FDLGGGTFD+S+L + + + EV+AT GDT LGGEDFD R++N+ V+EF+R+N  D+S +  AL+RL+ A E+AK+ LS++ +T I +
Sbjct:   64 TVFAVKRLMGRKGDAPEVNNWKTHSPYRIVAGANGDAAVEV----QGRQYSAAEVSAMILGKLKADAEAYLGETVTDAVITVPAYFNDAQRQATKDAGRIAGLDVKRIINEPTAASLAYGFDRKT----NEKIAVFDLGGGTFDISILEVGDNVVEVRATNGDTFLGGEDFDQRVINYLVEEFRRENGVDLSKDRMALQRLKEAAEKAKKDLSTSMETEINL 277          
BLAST of FC868656 vs. ExPASy Swiss-Prot
Match: DNAK_DEHSC (Chaperone protein dnaK OS=Dehalococcoides sp. (strain CBDB1) GN=dnaK PE=2 SV=1)

HSP 1 Score: 217.624 bits (553), Expect = 5.180e-56
Identity = 111/227 (48.90%), Postives = 160/227 (70.48%), Query Frame = 3
Query:    3 TVFDAKSLIGRRFSDAS-----VQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGSTIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEI 668
            TV+  K  +GR++ + +     V+ D K  P+KVI G  ++  + +     +K F+  E+S+M+L K++  AEAYLG  +  AV+TVPAYFND+QRQATKDAG IAGL V+RIINEPTAAA+AYGLDKK     ++ + ++DLGGGTFD+S+L + EG F+VK+TAGDTHLGG+DFD ++++  + E+K+    D+S +  AL+RL+ A E+AK  LS+  QT I +
Sbjct:   65 TVYSIKRFMGRKWGEPAGRELPVEADAKRKPYKVIQGNNNEVRVVMG----DKDFSPPEVSAMILQKLKSDAEAYLGEKVTEAVITVPAYFNDAQRQATKDAGAIAGLKVLRIINEPTAAALAYGLDKKK----DETIAVYDLGGGTFDISILELGEGTFQVKSTAGDTHLGGDDFDQKIIDWLIAEYKKDQGIDLSKDKTALQRLKEAAEKAKIELSTVQQTEINL 283          
BLAST of FC868656 vs. ExPASy Swiss-Prot
Match: DNAK_DEHSB (Chaperone protein dnaK OS=Dehalococcoides sp. (strain BAV1) GN=dnaK PE=2 SV=1)

HSP 1 Score: 217.624 bits (553), Expect = 5.180e-56
Identity = 111/227 (48.90%), Postives = 160/227 (70.48%), Query Frame = 3
Query:    3 TVFDAKSLIGRRFSDAS-----VQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGSTIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEI 668
            TV+  K  +GR++ + +     V+ D K  P+KVI G  ++  + +     +K F+  E+S+M+L K++  AEAYLG  +  AV+TVPAYFND+QRQATKDAG IAGL V+RIINEPTAAA+AYGLDKK     ++ + ++DLGGGTFD+S+L + EG F+VK+TAGDTHLGG+DFD ++++  + E+K+    D+S +  AL+RL+ A E+AK  LS+  QT I +
Sbjct:   65 TVYSIKRFMGRKWGEPAGRELPVEADAKRKPYKVIQGNNNEVRVVMG----DKDFSPPEVSAMILQKLKSDAEAYLGEKVTEAVITVPAYFNDAQRQATKDAGAIAGLKVLRIINEPTAAALAYGLDKKK----DETIAVYDLGGGTFDISILELGEGTFQVKSTAGDTHLGGDDFDQKIIDWLIAEYKKDQGIDLSKDKTALQRLKEAAEKAKIELSTVQQTEINL 283          
BLAST of FC868656 vs. ExPASy Swiss-Prot
Match: DNAK_XYLFA (Chaperone protein dnaK OS=Xylella fastidiosa GN=dnaK PE=2 SV=1)

HSP 1 Score: 217.238 bits (552), Expect = 6.765e-56
Identity = 118/226 (52.21%), Postives = 154/226 (68.14%), Query Frame = 3
Query:    3 TVFDAKSLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGSTIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIE----EGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEI 668
            T +  K LIGR+F DA VQ D+ L P+K+         +      + K+ A +EIS+ VL KM++ AE +LG  +  AV+TVPAYFNDSQRQATKDAG IAGL+V RIINEPTAAA+AYGLDKK    G++ + ++DLGGGTFDVS++ I     E  FEV AT GDT LGGEDFD R++++ V EF +    D+  +P AL+RL+ A ERAK  LSS+ QT + +
Sbjct:   65 TFYAVKRLIGRKFGDAEVQKDLDLVPYKITQHDNGDAWVAT---ADAKKLAPQEISAKVLEKMKKTAEDFLGEKVTEAVITVPAYFNDSQRQATKDAGRIAGLDVKRIINEPTAAALAYGLDKKG---GDRKIAVYDLGGGTFDVSIIEIAEVDGEKQFEVLATNGDTFLGGEDFDKRVIDYLVDEFNKDQGIDLRKDPLALQRLKDAAERAKIELSSSQQTEVNL 284          
BLAST of FC868656 vs. ExPASy Swiss-Prot
Match: DNAK_PSYWF (Chaperone protein dnaK OS=Psychrobacter sp. (strain PRwf-1) GN=dnaK PE=2 SV=1)

HSP 1 Score: 217.238 bits (552), Expect = 6.765e-56
Identity = 116/226 (51.33%), Postives = 157/226 (69.47%), Query Frame = 3
Query:    3 TVFDAKSLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGSTIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIE----EGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEI 668
            T++  K LIGRRF D  VQ D+ + P+K++        + VN    +K+ A  +IS+ +L KM++ AE YLG  + +AVVTVPAYFNDSQRQATKDAG IAGLNV RIINEPTAAA+AYG+DKK    G+  V ++DLGGGTFDVS++ I     E  FEV +T GDT LGGEDFD  ++++ V+EFK++   ++ G+P A++RL+ A E+AK  LSS   T + +
Sbjct:   64 TLYAIKRLIGRRFDDKVVQKDIGMVPYKIVKADNGDAWVEVN----DKKMAPPQISAEILQKMKKTAEDYLGEKVTDAVVTVPAYFNDSQRQATKDAGKIAGLNVKRIINEPTAAALAYGMDKKK---GDSTVAVYDLGGGTFDVSIIEIADVDGEQQFEVLSTNGDTFLGGEDFDLALIDYLVEEFKKEQNFNLKGDPLAMQRLKEAAEKAKIELSSAQSTEVNL 282          
The following BLAST results are available for this feature:
BLAST of FC868656 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DNAK_ALCBS3.966e-5653.10Chaperone protein dnaK OS=Alcanivorax borkumensis ... [more]
DNAK_RHOBA5.180e-5649.13Chaperone protein dnaK OS=Rhodopirellula baltica G... [more]
DNAK_OLICO5.180e-5650.90Chaperone protein dnaK OS=Oligotropha carboxidovor... [more]
DNAK_NITHX5.180e-5651.35Chaperone protein dnaK OS=Nitrobacter hamburgensis... [more]
DNAK_MARMS5.180e-5653.54Chaperone protein dnaK OS=Marinomonas sp. (strain ... [more]
DNAK_DESVM5.180e-5649.55Chaperone protein dnaK OS=Desulfovibrio vulgaris (... [more]
DNAK_DEHSC5.180e-5648.90Chaperone protein dnaK OS=Dehalococcoides sp. (str... [more]
DNAK_DEHSB5.180e-5648.90Chaperone protein dnaK OS=Dehalococcoides sp. (str... [more]
DNAK_XYLFA6.765e-5652.21Chaperone protein dnaK OS=Xylella fastidiosa GN=dn... [more]
DNAK_PSYWF6.765e-5651.33Chaperone protein dnaK OS=Psychrobacter sp. (strai... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC31003B06EF AbioticL1 Citrus clementina cDNA clone C31003B06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868656 ID=FC868656; Name=FC868656; organism=Citrus clementina; type=EST; length=710bp
ACACCGTCTTTGATGCAAAGAGCTTGATTGGTAGGAGATTCAGCGATGCA
TCAGTCCAAGGAGATATGAAGCTATGGCCATTTAAGGTGATTGCTGGACC
AGCTGACAAGCCCATGATTGGTGTTAACTACAAGGGCGAAGAGAAGCAGT
TTGCTGCTGAGGAAATCTCGTCTATGGTGCTCATCAAGATGCGTGAGATT
GCCGAGGCTTACCTTGGCTCAACTATTAAGAATGCAGTCGTTACTGTCCC
TGCTTACTTCAATGACTCACAGAGGCAGGCCACCAAGGATGCTGGTGTCA
TTGCTGGGCTTAATGTGATGCGTATCATCAATGAGCCCACTGCTGCTGCC
ATTGCTTATGGCCTTGACAAGAAGGCTACTAGTGTGGGTGAGAAGAATGT
GTTGATCTTTGATTTGGGTGGTGGTACTTTTGATGTGTCGTTGCTCACTA
TTGAGGAGGGAATCTTTGAAGTGAAGGCTACTGCTGGAGACACTCATCTT
GGTGGTGAGGATTTTGATAACAGAATGGTGAATCATTTTGTTCAGGAGTT
TAAGAGGAAGAACAAGAAGGATATTAGTGGCAACCCTAGAGCTCTTAGGA
GATTGAGGACTGCTTGTGAGAGAGCGAAGAGGACTCTCTCCTCTACTGCC
CAGACTACAATTGAGATTGATTCTTTGTATGANGGTATTGACTTTCTACT
CACCATAACT
back to top