FC868656

Overview
NameFC868656
Unique NameFC868656
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length710
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868656 vs. ExPASy Swiss-Prot
Match: DNAK_DEIGD (Chaperone protein dnaK OS=Deinococcus geothermalis (strain DSM 11300) GN=dnaK PE=2 SV=1)

HSP 1 Score: 216.468 bits (550), Expect = 1.154e-55
Identity = 116/222 (52.25%), Postives = 158/222 (71.17%), Query Frame = 3
Query:    3 TVFDAKSLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGSTIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEI 668
            T+F+ K  IGRR+ +  V+ +    PF V  GP     I VN     K  A E++S+ VL K+   A A LG  I +AV+TVPAYF++SQR+ATK AG IAGLNV+R+INEPTAAA+AYGL++K    G + VL+FDLGGGTFDV++L + EG+FEV++TAGDTHLGG DFD R+VN   +EF++++  D+  +P+AL+RL  A ERAK  LS+ ++TTI +
Sbjct:   64 TLFEVKRFIGRRWDE--VKEEAARMPFTVKEGPGGSVRIEVN----GKDLAPEQVSAEVLRKLVADASAKLGEKITDAVITVPAYFDNSQREATKQAGEIAGLNVLRVINEPTAAALAYGLERK----GNETVLVFDLGGGTFDVTILELGEGVFEVRSTAGDTHLGGADFDQRIVNWLAEEFRKEHNFDLRKDPQALQRLIEAAERAKIELSNASETTISL 275          
BLAST of FC868656 vs. ExPASy Swiss-Prot
Match: DNAK_PSEF5 (Chaperone protein dnaK OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN=dnaK PE=2 SV=1)

HSP 1 Score: 216.083 bits (549), Expect = 1.507e-55
Identity = 114/226 (50.44%), Postives = 161/226 (71.24%), Query Frame = 3
Query:    3 TVFDAKSLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGSTIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIE----EGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEI 668
            T++  K LIGRRF +  VQ D+++ P+K++    +   + VN     ++ A  +IS+ +L KM++ AE YLG  +  AV+TVPAYFNDSQRQATKDAG IAGL+V RIINEPTAAA+AYG+DK   + G+  V+++DLGGGTFDVS++ I     E  FEV AT GDT LGGEDFD R++++ V EFK+++  ++ G+P A++RL+ A E+AK  LSS+ QT + +
Sbjct:   65 TLYAVKRLIGRRFDEEVVQKDIQMVPYKIVKADNNDAWVEVN----GQKMAPPQISAEILKKMKKTAEDYLGEAVTEAVITVPAYFNDSQRQATKDAGRIAGLDVKRIINEPTAAALAYGMDK---AKGDHTVIVYDLGGGTFDVSVIEIAEVDGEHQFEVLATNGDTFLGGEDFDIRLIDYLVDEFKKESGMNLKGDPLAMQRLKEAAEKAKIELSSSQQTDVNL 283          
BLAST of FC868656 vs. ExPASy Swiss-Prot
Match: DNAK_PSEAE (Chaperone protein dnaK OS=Pseudomonas aeruginosa GN=dnaK PE=2 SV=1)

HSP 1 Score: 216.083 bits (549), Expect = 1.507e-55
Identity = 119/226 (52.65%), Postives = 161/226 (71.24%), Query Frame = 3
Query:    3 TVFDAKSLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGSTIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIE----EGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEI 668
            T++  K LIGRRF +  VQ D+++ P+ ++   AD     V  KG++   A  +IS+ VL KM++ AE YLG  +  AV+TVPAYFNDSQRQATKDAG IAGL+V RIINEPTAAA+AYGLDK   + G+  V+++DLGGGTFDVS++ I     E  FEV AT GDT LGGEDFD R++++ V EFK+++  ++ G+P A++RL+ A E+AK  LSST QT + +
Sbjct:   65 TLYAVKRLIGRRFEENVVQKDIQMVPYSIVK--ADNGDAWVEVKGQK--MAPPQISAEVLKKMKKTAEDYLGEPVTEAVITVPAYFNDSQRQATKDAGRIAGLDVKRIINEPTAAALAYGLDK---AKGDHTVIVYDLGGGTFDVSVIEIAEVDGEHQFEVLATNGDTFLGGEDFDIRLIDYLVDEFKKESGINLKGDPLAMQRLKEAAEKAKIELSSTQQTDVNL 283          
BLAST of FC868656 vs. ExPASy Swiss-Prot
Match: DNAK_PSEAB (Chaperone protein dnaK OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=dnaK PE=2 SV=1)

HSP 1 Score: 216.083 bits (549), Expect = 1.507e-55
Identity = 119/226 (52.65%), Postives = 161/226 (71.24%), Query Frame = 3
Query:    3 TVFDAKSLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGSTIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIE----EGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEI 668
            T++  K LIGRRF +  VQ D+++ P+ ++   AD     V  KG++   A  +IS+ VL KM++ AE YLG  +  AV+TVPAYFNDSQRQATKDAG IAGL+V RIINEPTAAA+AYGLDK   + G+  V+++DLGGGTFDVS++ I     E  FEV AT GDT LGGEDFD R++++ V EFK+++  ++ G+P A++RL+ A E+AK  LSST QT + +
Sbjct:   65 TLYAVKRLIGRRFEENVVQKDIQMVPYSIVK--ADNGDAWVEVKGQK--MAPPQISAEVLKKMKKTAEDYLGEPVTEAVITVPAYFNDSQRQATKDAGRIAGLDVKRIINEPTAAALAYGLDK---AKGDHTVIVYDLGGGTFDVSVIEIAEVDGEHQFEVLATNGDTFLGGEDFDIRLIDYLVDEFKKESGINLKGDPLAMQRLKEAAEKAKIELSSTQQTDVNL 283          
BLAST of FC868656 vs. ExPASy Swiss-Prot
Match: DNAK_PSEA8 (Chaperone protein dnaK OS=Pseudomonas aeruginosa (strain LESB58) GN=dnaK PE=2 SV=1)

HSP 1 Score: 216.083 bits (549), Expect = 1.507e-55
Identity = 119/226 (52.65%), Postives = 161/226 (71.24%), Query Frame = 3
Query:    3 TVFDAKSLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGSTIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIE----EGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEI 668
            T++  K LIGRRF +  VQ D+++ P+ ++   AD     V  KG++   A  +IS+ VL KM++ AE YLG  +  AV+TVPAYFNDSQRQATKDAG IAGL+V RIINEPTAAA+AYGLDK   + G+  V+++DLGGGTFDVS++ I     E  FEV AT GDT LGGEDFD R++++ V EFK+++  ++ G+P A++RL+ A E+AK  LSST QT + +
Sbjct:   65 TLYAVKRLIGRRFEENVVQKDIQMVPYSIVK--ADNGDAWVEVKGQK--MAPPQISAEVLKKMKKTAEDYLGEPVTEAVITVPAYFNDSQRQATKDAGRIAGLDVKRIINEPTAAALAYGLDK---AKGDHTVIVYDLGGGTFDVSVIEIAEVDGEHQFEVLATNGDTFLGGEDFDIRLIDYLVDEFKKESGINLKGDPLAMQRLKEAAEKAKIELSSTQQTDVNL 283          
BLAST of FC868656 vs. ExPASy Swiss-Prot
Match: DNAK_PSEA7 (Chaperone protein dnaK OS=Pseudomonas aeruginosa (strain PA7) GN=dnaK PE=2 SV=1)

HSP 1 Score: 216.083 bits (549), Expect = 1.507e-55
Identity = 119/226 (52.65%), Postives = 161/226 (71.24%), Query Frame = 3
Query:    3 TVFDAKSLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGSTIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIE----EGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEI 668
            T++  K LIGRRF +  VQ D+++ P+ ++   AD     V  KG++   A  +IS+ VL KM++ AE YLG  +  AV+TVPAYFNDSQRQATKDAG IAGL+V RIINEPTAAA+AYGLDK   + G+  V+++DLGGGTFDVS++ I     E  FEV AT GDT LGGEDFD R++++ V EFK+++  ++ G+P A++RL+ A E+AK  LSST QT + +
Sbjct:   65 TLYAVKRLIGRRFEENVVQKDIQMVPYSIVK--ADNGDAWVEVKGQK--MAPPQISAEVLKKMKKTAEDYLGEPVTEAVITVPAYFNDSQRQATKDAGRIAGLDVKRIINEPTAAALAYGLDK---AKGDHTVIVYDLGGGTFDVSVIEIAEVDGEHQFEVLATNGDTFLGGEDFDIRLIDYLVDEFKKESGINLKGDPLAMQRLKEAAEKAKIELSSTQQTDVNL 283          
BLAST of FC868656 vs. ExPASy Swiss-Prot
Match: DNAK_PROVI (Chaperone protein dnaK OS=Prosthecochloris vibrioformis (strain DSM 265) (strain DSM 265) GN=dnaK PE=2 SV=1)

HSP 1 Score: 216.083 bits (549), Expect = 1.507e-55
Identity = 111/222 (50.00%), Postives = 155/222 (69.82%), Query Frame = 3
Query:    3 TVFDAKSLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGSTIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEI 668
            T+F  K  +GR+F +  V  + K+ P+ V+    +        K  +K ++ +EIS+M+L KM++ AE +LG  +  AV+TVPAYFND+QRQATKDAG IAGL V RIINEPTAAA+AYGLDKK +S   + V +FDLGGGTFD+S+L + +G+FEVK+T GDTHLGG+DFD ++++    EFK++   D+  +P AL+RL+ A E+AK  LSS   T I +
Sbjct:   65 TIFSIKRFVGRKFDE--VPNEKKIAPYAVVNEGGE-----ARVKINDKTYSPQEISAMILQKMKQTAEDFLGEKVTEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALAYGLDKKTSS---EKVAVFDLGGGTFDISILELGDGVFEVKSTDGDTHLGGDDFDQKIIDFLADEFKKQEGIDLRNDPIALQRLKEAGEKAKIELSSRTDTEINL 276          
BLAST of FC868656 vs. ExPASy Swiss-Prot
Match: DNAK_NITMU (Chaperone protein dnaK OS=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) GN=dnaK PE=2 SV=1)

HSP 1 Score: 216.083 bits (549), Expect = 1.507e-55
Identity = 117/226 (51.77%), Postives = 159/226 (70.35%), Query Frame = 3
Query:    3 TVFDAKSLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGSTIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIE----EGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEI 668
            T+F  K LIGRRF++  VQ D+K+ P+ +I   AD     +  +G  K+ A  E+S+ VL+KM++ AE YLG  +  AV+TVPAYFNDSQRQATKDAG IAGL V RIINEPTAAA+A+G+DKK    G++ + ++DLGGGTFD+S++ I     E  FEV AT GDT LGGEDFD R++ + V EFK++N  D+  +  AL+RL+ + E+AK  LSS+ QT + +
Sbjct:   65 TLFAVKRLIGRRFNEEMVQRDIKMVPYTIIK--ADNNDAWIEVRG--KKVAPPEVSAQVLMKMKKTAEDYLGEPVTEAVITVPAYFNDSQRQATKDAGRIAGLEVKRIINEPTAAALAFGMDKKE---GDRKIAVYDLGGGTFDISIIEIAEVEGEHQFEVLATNGDTFLGGEDFDARIIEYLVDEFKKENGIDLKKDMLALQRLKDSAEKAKIELSSSQQTEVNL 283          
BLAST of FC868656 vs. ExPASy Swiss-Prot
Match: DNAK_HALHL (Chaperone protein dnaK OS=Halorhodospira halophila (strain DSM 244 / SL1) GN=dnaK PE=2 SV=1)

HSP 1 Score: 216.083 bits (549), Expect = 1.507e-55
Identity = 121/226 (53.54%), Postives = 156/226 (69.03%), Query Frame = 3
Query:    3 TVFDAKSLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGSTIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIE----EGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEI 668
            T+   K LIGRRF +  VQ D+K  P+K++   AD     V  +G  K+ A  E+S+  L KM+  AE YLG  +  AV+TVPAYFNDSQRQATKDAG IAGL V RIINEPTAAA+AYGLDK+    G+K V ++DLGGGTFDVS++ I     E  FEV +T+GDT LGGEDFD R++++ +QEFK+    D++ +  AL+RLR A E+AK  LSS+ QT I +
Sbjct:   65 TIHAVKRLIGRRFDEDVVQRDIKEMPYKIVK--ADNGDAWVEAQG--KKMAPPEVSARTLQKMKSTAEDYLGEEVTEAVITVPAYFNDSQRQATKDAGKIAGLEVKRIINEPTAAALAYGLDKEG---GDKKVAVYDLGGGTFDVSIIEIAEVDGEKQFEVLSTSGDTFLGGEDFDKRIIDYLIQEFKKDQGIDLAQDHLALQRLREAAEKAKVELSSSQQTEINL 283          
BLAST of FC868656 vs. ExPASy Swiss-Prot
Match: DNAK_CHLTR (Chaperone protein dnaK OS=Chlamydia trachomatis GN=dnaK PE=1 SV=4)

HSP 1 Score: 216.083 bits (549), Expect = 1.507e-55
Identity = 116/230 (50.43%), Postives = 159/230 (69.13%), Query Frame = 3
Query:    3 TVFDAKSLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGSTIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYXGID 692
            T+   K  IGR+FS+  V+ ++K  P+KV        +  V    E+K +  EEI + +L+KM+E AEAYLG T+  AV+TVPAYFNDSQR +TKDAG IAGL+V RII EPTAAA+AYG+DK+    G+K + +FDLGGGTFD+S+L I +G+FEV +T GDTHLGG+DFD  ++N  + EFK++   D+S +  AL+RL+ A E+AK  LS  + T  EI+  +  ID
Sbjct:   70 TLASTKRFIGRKFSE--VESEIKTVPYKVAPNSKGDAVFDV----EQKLYTPEEIGAQILMKMKETAEAYLGETVTEAVITVPAYFNDSQRASTKDAGRIAGLDVKRIIPEPTAAALAYGIDKE----GDKKIAVFDLGGGTFDISILEIGDGVFEVLSTNGDTHLGGDDFDGVIINWMLDEFKKQEGIDLSKDNMALQRLKDAAEKAKIELSGVSST--EINQPFITID 287          
The following BLAST results are available for this feature:
BLAST of FC868656 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DNAK_DEIGD1.154e-5552.25Chaperone protein dnaK OS=Deinococcus geothermalis... [more]
DNAK_PSEF51.507e-5550.44Chaperone protein dnaK OS=Pseudomonas fluorescens ... [more]
DNAK_PSEAE1.507e-5552.65Chaperone protein dnaK OS=Pseudomonas aeruginosa G... [more]
DNAK_PSEAB1.507e-5552.65Chaperone protein dnaK OS=Pseudomonas aeruginosa (... [more]
DNAK_PSEA81.507e-5552.65Chaperone protein dnaK OS=Pseudomonas aeruginosa (... [more]
DNAK_PSEA71.507e-5552.65Chaperone protein dnaK OS=Pseudomonas aeruginosa (... [more]
DNAK_PROVI1.507e-5550.00Chaperone protein dnaK OS=Prosthecochloris vibriof... [more]
DNAK_NITMU1.507e-5551.77Chaperone protein dnaK OS=Nitrosospira multiformis... [more]
DNAK_HALHL1.507e-5553.54Chaperone protein dnaK OS=Halorhodospira halophila... [more]
DNAK_CHLTR1.507e-5550.43Chaperone protein dnaK OS=Chlamydia trachomatis GN... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC31003B06EF AbioticL1 Citrus clementina cDNA clone C31003B06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868656 ID=FC868656; Name=FC868656; organism=Citrus clementina; type=EST; length=710bp
ACACCGTCTTTGATGCAAAGAGCTTGATTGGTAGGAGATTCAGCGATGCA
TCAGTCCAAGGAGATATGAAGCTATGGCCATTTAAGGTGATTGCTGGACC
AGCTGACAAGCCCATGATTGGTGTTAACTACAAGGGCGAAGAGAAGCAGT
TTGCTGCTGAGGAAATCTCGTCTATGGTGCTCATCAAGATGCGTGAGATT
GCCGAGGCTTACCTTGGCTCAACTATTAAGAATGCAGTCGTTACTGTCCC
TGCTTACTTCAATGACTCACAGAGGCAGGCCACCAAGGATGCTGGTGTCA
TTGCTGGGCTTAATGTGATGCGTATCATCAATGAGCCCACTGCTGCTGCC
ATTGCTTATGGCCTTGACAAGAAGGCTACTAGTGTGGGTGAGAAGAATGT
GTTGATCTTTGATTTGGGTGGTGGTACTTTTGATGTGTCGTTGCTCACTA
TTGAGGAGGGAATCTTTGAAGTGAAGGCTACTGCTGGAGACACTCATCTT
GGTGGTGAGGATTTTGATAACAGAATGGTGAATCATTTTGTTCAGGAGTT
TAAGAGGAAGAACAAGAAGGATATTAGTGGCAACCCTAGAGCTCTTAGGA
GATTGAGGACTGCTTGTGAGAGAGCGAAGAGGACTCTCTCCTCTACTGCC
CAGACTACAATTGAGATTGATTCTTTGTATGANGGTATTGACTTTCTACT
CACCATAACT
back to top