FC868658

Overview
NameFC868658
Unique NameFC868658
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length685
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868658 vs. ExPASy Swiss-Prot
Match: GCST_PSEHT (Aminomethyltransferase OS=Pseudoalteromonas haloplanktis (strain TAC 125) GN=gcvT PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 8.628e-21
Identity = 63/155 (40.65%), Postives = 82/155 (52.90%), Query Frame = 2
Query:  224 KTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLA-PGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLA 685
            KT L+  H+  G KMV F GW MPI Y   I E     R +  +FDVSHM  + ++G+    FL+KLV  DVA L  PG    T   NE GG IDD +I    +    LVVN+  R+KDLAH+      F      V+    +E  ++A+QGP A
Sbjct:    4 KTVLYAKHLEAGAKMVDFHGWEMPINYGSQIEEHNA-VRNDAGMFDVSHMTIVDIQGEQAQAFLQKLVANDVAKLTVPGKALYTPMLNEQGGVIDDLIIYFFSNTSYRLVVNSATREKDLAHLAKISADFA-----VTVTERNEFGMIAVQGPNA 152          
BLAST of FC868658 vs. ExPASy Swiss-Prot
Match: GCST_GEOSW (Aminomethyltransferase OS=Geobacillus sp. (strain WCH70) GN=gcvT PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.127e-20
Identity = 62/157 (39.49%), Postives = 85/157 (54.14%), Query Frame = 2
Query:  218 LKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSW-HIHDERSLLALQGPLA 685
            LK+T L   +   G K + F GW +P+Q+  SI E     R    LFDVSHM    +KG D + FL+K++  DV+ L  G    ++   E+GG++DD +I K  D H  LVVNA   +KD   +  H+       GDV   +I  E + LALQGPLA
Sbjct:    2 LKRTPLFAVYERYGAKTIDFGGWELPVQFS-SIKEEHEAVRTRAGLFDVSHMGEFVVKGDDSLAFLQKMMTNDVSKLTDGRVQYSLMCYEDGGTVDDLLIYKKADGHYLLVVNAANIEKDFEWLHGHL------FGDVELVNISQEIAQLALQGPLA 151          
BLAST of FC868658 vs. ExPASy Swiss-Prot
Match: GCST_ENTS8 (Aminomethyltransferase OS=Enterobacter sakazakii (strain ATCC BAA-894) GN=gcvT PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.127e-20
Identity = 61/156 (39.10%), Postives = 86/156 (55.13%), Query Frame = 2
Query:  221 KKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLA-PGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLA 685
            ++T L++ H   G +MV F GW MP+ Y   I E     R +  +FDVSHM  + L+G     FL  L+  DVA L  PG    T   N +GG IDD ++  + +D+  LVVN+  R+KDLA I  H + +      VS  + D+ SL+A+QGP A
Sbjct:    3 QQTPLYEQHNLCGARMVDFHGWMMPLHYGSQIDEHHA-VRNDAGMFDVSHMTIVDLRGARTREFLRYLLANDVAKLTQPGKALYTAMLNASGGVIDDLIVYFMTEDYFRLVVNSATREKDLAWINEHAEPY-----GVSVTVRDDLSLIAVQGPNA 152          
BLAST of FC868658 vs. ExPASy Swiss-Prot
Match: GCST_DECAR (Aminomethyltransferase OS=Dechloromonas aromatica (strain RCB) GN=gcvT PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.127e-20
Identity = 57/127 (44.88%), Postives = 70/127 (55.12%), Query Frame = 2
Query:  218 LKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGL-APGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEA 595
            LKKT L+  H A   +MV F GW MP+ Y   I E     R N  +FDVSHMC + + G DC  FL +LV  DVA L   G        NE GG IDD +I  + D    +VVNAG  +KDLA ++A
Sbjct:    2 LKKTVLNAAHRAMNARMVDFGGWDMPVNYGSQIEEHNA-VRNNCGMFDVSHMCPVDVVGADCRTFLSRLVANDVAKLKVSGKALYAAMLNEAGGVIDDLIIYFLTDTRFRIVVNAGTAEKDLAWMQA 127          
BLAST of FC868658 vs. ExPASy Swiss-Prot
Match: GCST_THETN (Aminomethyltransferase OS=Thermoanaerobacter tengcongensis GN=gcvT PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.472e-20
Identity = 59/158 (37.34%), Postives = 89/158 (56.33%), Query Frame = 2
Query:  212 ENLKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLA 685
            +NLKKT L++ +     K++ FAGW+MP+Q++  I E     R    LFDVSHM  + +KGKD  PFL+ L+  D++ L       T   N NGG IDD ++ K  +++  LVVNA   +KD   +  +   +  +  +VS    D+ + LA+QGP A
Sbjct:    8 DNLKKTPLYEIYPKYNAKIIDFAGWAMPVQFESIISEHEA-VRNAAGLFDVSHMGEIIVKGKDAFPFLQNLLTNDLSKLNDNQVLYTFMCNHNGGVIDDLLVYKYSNNYYLLVVNAANIEKDYKWMLNNAGIYKVEIENVS----DKIAELAIQGPKA 160          
BLAST of FC868658 vs. ExPASy Swiss-Prot
Match: GCST_CLOB1 (Aminomethyltransferase OS=Clostridium botulinum (strain ATCC 19397 / Type A) GN=gcvT PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.472e-20
Identity = 61/158 (38.61%), Postives = 85/158 (53.80%), Query Frame = 2
Query:  212 ENLKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLA 685
            ++LK T L   +   GGK+V FAG+ +P Q+K  + E     R+   LFDVSHM    + GKD   F++ L+  D+  L       T   NE+GG IDD ++ K  +D  +LV+NA  +DKD+  I  H   F  +  DVS    D  + LA QGPLA
Sbjct:    2 KDLKVTPLRGVYEEYGGKIVDFAGYELPTQFKGFLHEHH-TVREKAGLFDVSHMGEAMVTGKDAGKFIQYLMTNDINVLKDNEVLYTFMCNEDGGVIDDLLVYKFAEDEFFLVINASNKDKDVKWIMDHKGDFDVEIVDVS----DSIAQLAFQGPLA 154          
BLAST of FC868658 vs. ExPASy Swiss-Prot
Match: GCST_STACT (Aminomethyltransferase OS=Staphylococcus carnosus (strain TM300) GN=gcvT PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.922e-20
Identity = 59/159 (37.11%), Postives = 87/159 (54.72%), Query Frame = 2
Query:  209 AENLKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLA 685
            + +LKKT L+D  V +  K+V F GW+MP+Q+  SI E     R+   +FDVSHM  + ++GKD   F++ ++  D   L       T   N+ GG IDD +  K+ +    LVVNA   +KD   I +H ++F  K  +VS    D+   LA+QGP A
Sbjct:    2 SNDLKKTPLYDRFVESNAKIVEFGGWAMPVQFS-SIKEEHNAVREVMGIFDVSHMGEVLIEGKDASDFIQYILSNDTDQLTDNKAQYTALCNDKGGIIDDLITYKLDNQKYLLVVNAANTEKDYNWINSHSENFDVKVENVS----DQYGQLAVQGPEA 155          
BLAST of FC868658 vs. ExPASy Swiss-Prot
Match: GCST_PROM3 (Aminomethyltransferase OS=Prochlorococcus marinus (strain MIT 9303) GN=gcvT PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.922e-20
Identity = 60/162 (37.04%), Postives = 83/162 (51.23%), Query Frame = 2
Query:  215 NLKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVI-----TKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLA 685
            NL+ T LHD     GG+MVPFAGW MP+Q+   + E     RQ   +FD+SHM  L L+G +    L+ LV  D+  + PG    TV  NE GG +DD V+      K     + +V+NA C + D   ++ H++       D      +   LLALQGP A
Sbjct:    2 NLQHTPLHDLCRDAGGRMVPFAGWDMPVQFSGLLQEHQA-VRQQVGMFDISHMGVLRLEGTNPKDTLQALVPTDLNRIGPGEACYTVLLNETGGILDDLVVYDLGTNKQDSQSLLIVINAACSETDTIWLKQHLQPAGIALSDAK----NNGVLLALQGPQA 158          
BLAST of FC868658 vs. ExPASy Swiss-Prot
Match: GCST_IDILO (Aminomethyltransferase OS=Idiomarina loihiensis GN=gcvT PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.922e-20
Identity = 62/155 (40.00%), Postives = 83/155 (53.55%), Query Frame = 2
Query:  224 KTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGL-APGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLA 685
            +T L++ HV  G KMV F GW MP+ Y   I E     R++  +FDVSHM  + ++G     FL  L+  DVA L   G    T   NENGG IDD ++    ++   +VVN+  RD+DLA IE     F     DV+    D+  +LALQGP A
Sbjct:    4 RTPLYEAHVKAGAKMVDFHGWDMPLNYGSQIEEHHA-VRRDCGVFDVSHMTIVDVEGSQAQAFLRYLLANDVAKLKTEGKAQYTSMLNENGGVIDDLIVYFFSENAYRMVVNSATRDRDLAWIEKVAADF-----DVTTKERDDMGMLALQGPKA 152          
BLAST of FC868658 vs. ExPASy Swiss-Prot
Match: GCST_EDWI9 (Aminomethyltransferase OS=Edwardsiella ictaluri (strain 93-146) GN=gcvT PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.922e-20
Identity = 62/156 (39.74%), Postives = 84/156 (53.85%), Query Frame = 2
Query:  221 KKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLA-PGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLA 685
            K+T L+D HVA G +MV F GW MP+ Y  S +E     R +  +FDVSHM  + L G     FL  L+  DVA L  PG    +   N +GG IDD ++  + D H  LVVN+  R++DLA I  H  +F      V      + +L+A+QGP A
Sbjct:    3 KQTVLYDQHVAEGARMVDFHGWMMPLHY-GSQLEEHHAVRSDAGMFDVSHMTIVDLHGVRVRDFLRHLLANDVARLTQPGKALYSAMLNASGGVIDDLIVYFMADHHFRLVVNSATRERDLAWIGEHAPAF-----GVEICERRDLALIAVQGPTA 152          
The following BLAST results are available for this feature:
BLAST of FC868658 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 330
Match NameE-valueIdentityDescription
GCST_PSEHT8.628e-2140.65Aminomethyltransferase OS=Pseudoalteromonas halopl... [more]
GCST_GEOSW1.127e-2039.49Aminomethyltransferase OS=Geobacillus sp. (strain ... [more]
GCST_ENTS81.127e-2039.10Aminomethyltransferase OS=Enterobacter sakazakii (... [more]
GCST_DECAR1.127e-2044.88Aminomethyltransferase OS=Dechloromonas aromatica ... [more]
GCST_THETN1.472e-2037.34Aminomethyltransferase OS=Thermoanaerobacter tengc... [more]
GCST_CLOB11.472e-2038.61Aminomethyltransferase OS=Clostridium botulinum (s... [more]
GCST_STACT1.922e-2037.11Aminomethyltransferase OS=Staphylococcus carnosus ... [more]
GCST_PROM31.922e-2037.04Aminomethyltransferase OS=Prochlorococcus marinus ... [more]
GCST_IDILO1.922e-2040.00Aminomethyltransferase OS=Idiomarina loihiensis GN... [more]
GCST_EDWI91.922e-2039.74Aminomethyltransferase OS=Edwardsiella ictaluri (s... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC31003B08EF AbioticL1 Citrus clementina cDNA clone C31003B08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868658 ID=FC868658; Name=FC868658; organism=Citrus clementina; type=EST; length=685bp
GNAGCACCGCTCTCTCTGTGTATTCCTGGAGATGCTCTTTCGGGCTCCCA
GATTTGCTTGTTTCTGAGATAAAGAAGAAAACCCCATCTCTATATTTATA
TCGAATAAAATGAGAGGAGGGAGTCTGTGGCAGCTTGGACAATCGATCAC
CCGTCGTTTGGCTCTGGCTGATAAGAAGACTATAGCTCGTAGACACTTTG
CCTCAGATGCTGAAAACCTGAAAAAAACTGCCCTTCATGACTTTCATGTG
GCTAATGGTGGAAAGATGGTTCCATTTGCTGGATGGAGCATGCCTATTCA
GTACAAGGACTCAATTATGGAATCTACTTTGAATTGTCGGCAGAATGGTA
GTCTCTTTGATGTCTCCCATATGTGTGGGCTGAGCCTCAAAGGGAAGGAT
TGCGTCCCTTTCCTTGAGAAGCTTGTGATCGCTGATGTTGCTGGACTTGC
CCCAGGAACTGGGACTCTTACAGTCTTTACAAATGAAAATGGGGGTTCAA
TTGATGATTCGGTTATTACCAAGGTGAAGGATGATCACATATACCTTGTT
GTGAATGCTGGCTGCAGGGATAAGGATCTTGCTCACATTGAGGCACATAT
GAAGAGTTTCACAGCCAAAGGTGGGGATGTCTCGTGGCACATCCATGATG
AGAGATCTCTTCTTGCCCTTCAGGGCCCCCTTGCT
back to top