FC868658

Overview
NameFC868658
Unique NameFC868658
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length685
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868658 vs. ExPASy Swiss-Prot
Match: GCST_SHEPW (Aminomethyltransferase OS=Shewanella piezotolerans (strain WP3 / JCM 13877) GN=gcvT PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.510e-20
Identity = 60/155 (38.71%), Postives = 83/155 (53.55%), Query Frame = 2
Query:  224 KTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGL-APGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLA 685
            KT L + H+ + GKMV F GW MP+ Y   I E     RQ+  +FDVSHM  + + G D   FL KL+  DVA L  PG        + NGG IDD +   + D    +VVN+  R+KDLA I   +K F+ +  +       E +++A+QGP A
Sbjct:    4 KTVLFNKHLESNGKMVDFHGWDMPLNYGSQIEEHHA-VRQDAGMFDVSHMTVVDVIGDDACAFLRKLLANDVAKLKVPGKALYGGMLDHNGGVIDDLITYYLSDTQYRIVVNSATREKDLAWINEQVKGFSVEVTE-----RPELAMIAVQGPNA 152          
BLAST of FC868658 vs. ExPASy Swiss-Prot
Match: GCST_SHEPA (Aminomethyltransferase OS=Shewanella pealeana (strain ATCC 700345 / ANG-SQ1) GN=gcvT PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.510e-20
Identity = 60/155 (38.71%), Postives = 83/155 (53.55%), Query Frame = 2
Query:  224 KTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGL-APGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLA 685
            KT L + H+ + GKMV F GW MP+ Y   I E     RQ+  +FDVSHM  + + G D   FL KL+  DVA L  PG        + NGG IDD +   + D    +VVN+  R+KDLA I   +K F+ +  +       E +++A+QGP A
Sbjct:    4 KTVLFNKHLESNGKMVDFHGWDMPLNYGSQIEEHHA-VRQDAGMFDVSHMTVVDVIGDDACAFLRKLLANDVAKLKVPGKALYGGMLDHNGGVIDDLITYYLSDTEYRIVVNSATREKDLAWINEQVKGFSVEVTE-----RPELAMIAVQGPNA 152          
BLAST of FC868658 vs. ExPASy Swiss-Prot
Match: GCST_SHEFN (Aminomethyltransferase OS=Shewanella frigidimarina (strain NCIMB 400) GN=gcvT PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.510e-20
Identity = 63/155 (40.65%), Postives = 81/155 (52.26%), Query Frame = 2
Query:  224 KTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLA-PGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLA 685
            KT L + H+ +  KMV F GW MPI Y   I E     RQ+  +FDVSHM  + + G D   FL KL+  DVA L  PG        +EN G IDD +   + D H  +VVN+  RDKDLA I     +F     DV      E +++A+QGP A
Sbjct:    4 KTVLFNKHLESKAKMVDFHGWEMPINYGSQIEEHHA-VRQDAGMFDVSHMTVVDVTGSDACAFLRKLLANDVAKLTVPGKALYGGMLDENAGIIDDLITYYLTDTHYRVVVNSATRDKDLAWINKQAAAF-----DVVVTERPELAMIAVQGPNA 152          
BLAST of FC868658 vs. ExPASy Swiss-Prot
Match: GCST_PROMM (Aminomethyltransferase OS=Prochlorococcus marinus (strain MIT 9313) GN=gcvT PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.510e-20
Identity = 61/162 (37.65%), Postives = 82/162 (50.62%), Query Frame = 2
Query:  215 NLKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVI-----TKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLA 685
            NL+ T LHD     GG+MVPFAGW MP+Q+   + E     RQ   +FD+SHM  L L+G +    L+ LV  D+  + PG    TV  NE GG +DD VI      K     + +V+NA C   D   ++ H++       D      +   LLALQGP A
Sbjct:    2 NLQHTPLHDLCRDAGGRMVPFAGWDMPVQFSGLLQEHQA-VRQQVGMFDISHMGVLRLEGTNPKDHLQALVPTDLNRIGPGEACYTVLLNETGGILDDLVIYDLGTNKQDSQSLLIVINAACSKTDTIWLKQHLQPAGIALSDAK----NNGVLLALQGPQA 158          
BLAST of FC868658 vs. ExPASy Swiss-Prot
Match: GCST_CLOBK (Aminomethyltransferase OS=Clostridium botulinum (strain Okra / Type B1) GN=gcvT PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.510e-20
Identity = 61/158 (38.61%), Postives = 86/158 (54.43%), Query Frame = 2
Query:  212 ENLKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLA 685
            E+LK T L   +   GGK+V FAG+ +P Q+K  + E     R+   LFDVSHM  + + GKD   F++ L+  D+  L       T   NE+GG IDD ++ K  ++  +LV+NA  +DKD+  I  H   F  +  D S    D  + LALQGPLA
Sbjct:    2 EDLKVTPLRGVYEEYGGKIVDFAGYELPTQFKGFLHEHH-TVREKAGLFDVSHMGEVMVTGKDAGKFIQYLMTNDINILKDNEVLYTFMCNEDGGVIDDLLVYKFAENEFFLVINASNKDKDVKWIMDHKGDFDVEIVDES----DSIAQLALQGPLA 154          
BLAST of FC868658 vs. ExPASy Swiss-Prot
Match: GCST_METCA (Aminomethyltransferase OS=Methylococcus capsulatus GN=gcvT PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.279e-20
Identity = 55/152 (36.18%), Postives = 86/152 (56.58%), Query Frame = 2
Query:  227 TALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLA-PGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGP 679
            TALH+ H+A G +M  F+GW +P+ Y   I E     R+   +FDVSH+  + ++G    PFL +++  DVA LA PG        N++GG +DD V+  + D    L++NAG R+KDL+ +      F+     V+    D+ +++ALQGP
Sbjct:    5 TALHEEHLALGARMTEFSGWELPLHYGSQIAEHHA-VRRAAGMFDVSHLGVVDVEGLQAAPFLRRVLANDVARLAEPGRMLYGCMLNQDGGIVDDLVVGFIDDRRFRLILNAGTREKDLSWLHRQAAPFS-----VTVTPRDDLAMIALQGP 150          
BLAST of FC868658 vs. ExPASy Swiss-Prot
Match: GCST_ACIBL (Aminomethyltransferase OS=Acidobacteria bacterium (strain Ellin345) GN=gcvT PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.279e-20
Identity = 53/157 (33.76%), Postives = 87/157 (55.41%), Query Frame = 2
Query:  215 NLKKTALHDFHVANGGKMVPFAGWSMPIQYKD--SIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGP 679
            N++KTAL+  H  +G KMV ++GW MP++Y     +M+  L  R    LFDVSHM  + + G + +  ++ L + D + L  G    +     NG  +DD ++ K  DD   LV+NAG R+KD+  ++ + + F     D+S    D+ + +A+QGP
Sbjct:    8 NIRKTALNATHRQSGAKMVDYSGWDMPVEYPSVGGLMKEHLAVRAGVGLFDVSHMGDIRVHGPEALKAVQYLTMNDASKLNTGQAQYSAMLYPNGTFVDDVIVHKFADDDYLLVINAGTREKDVNWVKDNTRQFKVTVEDLS----DQFTQIAIQGP 160          
BLAST of FC868658 vs. ExPASy Swiss-Prot
Match: GCST_SHEWM (Aminomethyltransferase OS=Shewanella woodyi (strain ATCC 51908 / MS32) GN=gcvT PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.282e-20
Identity = 61/155 (39.35%), Postives = 81/155 (52.26%), Query Frame = 2
Query:  224 KTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGL-APGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLA 685
            KT L + H+ +  KMV F GW MP+ Y   I E     RQ+  +FDVSHM  + + G D   FL KL+  DVA L  PG        + N G IDD +   + D H  +VVN+  R+KDLA I   +K F     DV      E +++A+QGP A
Sbjct:    4 KTVLFNKHLESDAKMVDFHGWDMPLNYGSQIEEHHA-VRQDAGMFDVSHMTVVDVNGTDACAFLRKLLANDVAKLKVPGKALYGGMLDHNAGVIDDLITYYLNDTHYRIVVNSATREKDLAWIAQEVKGF-----DVVITERPELAMIAVQGPNA 152          
BLAST of FC868658 vs. ExPASy Swiss-Prot
Match: GCST_SHESH (Aminomethyltransferase OS=Shewanella sediminis (strain HAW-EB3) GN=gcvT PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.282e-20
Identity = 61/155 (39.35%), Postives = 81/155 (52.26%), Query Frame = 2
Query:  224 KTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGL-APGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLA 685
            KT L + H+ +  KMV F GW MP+ Y   I E     RQ+  +FDVSHM  + + G D   FL KL+  DVA L  PG        + N G IDD +   + D H  +VVN+  R+KDLA I   +K F     DV      E +++A+QGP A
Sbjct:    4 KTVLFNKHLESDAKMVDFHGWDMPLNYGSQIEEHNA-VRQDAGMFDVSHMTVVDVTGTDACAFLRKLLANDVAKLKVPGKALYGGMLDHNAGVIDDLITYYLTDTHYRVVVNSATREKDLAWIAEQVKGF-----DVEIVERPELAMIAVQGPNA 152          
BLAST of FC868658 vs. ExPASy Swiss-Prot
Match: GCST_BORPD (Aminomethyltransferase OS=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) GN=gcvT PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.282e-20
Identity = 61/158 (38.61%), Postives = 86/158 (54.43%), Query Frame = 2
Query:  215 NLKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGL-APGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLA 685
            +LK+T L D HVA G +MV F GW MP+ Y  S +E     R++  +FDVSHM  + + G D   FL +LV  DVA L  PG    +   N  GG IDD ++     D   +VVNA   DKD+A ++   +   A   DV+     + +++A+QGP A
Sbjct:    4 SLKRTPLADAHVAAGARMVDFGGWDMPLAY-GSQLEEHHAVRRDAGMFDVSHMLNVDVTGPDATAFLRRLVANDVARLTVPGKALYSCMLNPQGGIIDDLIVYFFAADQWRVVVNAATADKDVAWMQ---RVAAAGSYDVAIAPRRDLAMVAVQGPNA 157          
The following BLAST results are available for this feature:
BLAST of FC868658 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 330
Match NameE-valueIdentityDescription
GCST_SHEPW2.510e-2038.71Aminomethyltransferase OS=Shewanella piezotolerans... [more]
GCST_SHEPA2.510e-2038.71Aminomethyltransferase OS=Shewanella pealeana (str... [more]
GCST_SHEFN2.510e-2040.65Aminomethyltransferase OS=Shewanella frigidimarina... [more]
GCST_PROMM2.510e-2037.65Aminomethyltransferase OS=Prochlorococcus marinus ... [more]
GCST_CLOBK2.510e-2038.61Aminomethyltransferase OS=Clostridium botulinum (s... [more]
GCST_METCA3.279e-2036.18Aminomethyltransferase OS=Methylococcus capsulatus... [more]
GCST_ACIBL3.279e-2033.76Aminomethyltransferase OS=Acidobacteria bacterium ... [more]
GCST_SHEWM4.282e-2039.35Aminomethyltransferase OS=Shewanella woodyi (strai... [more]
GCST_SHESH4.282e-2039.35Aminomethyltransferase OS=Shewanella sediminis (st... [more]
GCST_BORPD4.282e-2038.61Aminomethyltransferase OS=Bordetella petrii (strai... [more]

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Properties
Property NameValue
Genbank descriptionC31003B08EF AbioticL1 Citrus clementina cDNA clone C31003B08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868658 ID=FC868658; Name=FC868658; organism=Citrus clementina; type=EST; length=685bp
GNAGCACCGCTCTCTCTGTGTATTCCTGGAGATGCTCTTTCGGGCTCCCA
GATTTGCTTGTTTCTGAGATAAAGAAGAAAACCCCATCTCTATATTTATA
TCGAATAAAATGAGAGGAGGGAGTCTGTGGCAGCTTGGACAATCGATCAC
CCGTCGTTTGGCTCTGGCTGATAAGAAGACTATAGCTCGTAGACACTTTG
CCTCAGATGCTGAAAACCTGAAAAAAACTGCCCTTCATGACTTTCATGTG
GCTAATGGTGGAAAGATGGTTCCATTTGCTGGATGGAGCATGCCTATTCA
GTACAAGGACTCAATTATGGAATCTACTTTGAATTGTCGGCAGAATGGTA
GTCTCTTTGATGTCTCCCATATGTGTGGGCTGAGCCTCAAAGGGAAGGAT
TGCGTCCCTTTCCTTGAGAAGCTTGTGATCGCTGATGTTGCTGGACTTGC
CCCAGGAACTGGGACTCTTACAGTCTTTACAAATGAAAATGGGGGTTCAA
TTGATGATTCGGTTATTACCAAGGTGAAGGATGATCACATATACCTTGTT
GTGAATGCTGGCTGCAGGGATAAGGATCTTGCTCACATTGAGGCACATAT
GAAGAGTTTCACAGCCAAAGGTGGGGATGTCTCGTGGCACATCCATGATG
AGAGATCTCTTCTTGCCCTTCAGGGCCCCCTTGCT
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