FC868658

Overview
NameFC868658
Unique NameFC868658
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length685
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868658 vs. ExPASy Swiss-Prot
Match: GCST_BDEBA (Aminomethyltransferase OS=Bdellovibrio bacteriovorus GN=gcvT PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.282e-20
Identity = 65/160 (40.62%), Postives = 86/160 (53.75%), Query Frame = 2
Query:  218 LKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLV-VNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSL---LALQGPLA 685
            +KKT L D H   G +MV FAGW MP+QY   + E   N R N  LFDVSHM  + +KG   +  LE L   DV+ L  G    ++  N+ GG +DD ++  +  D  YLV VNA  +DKD A +  H      KG D++    DE  L   +A+QGP A
Sbjct:    1 MKKTPLADTHEKLGARMVDFAGWYMPVQYI-GLREEHNNVRTNVGLFDVSHMGEVRVKGPKALETLEWLTTNDVSKLNDGEAQYSLLPNDQGGLVDDIIVYCLSKDSDYLVCVNASNKDKDFAWMTKH-----NKGADIT----DESDLWGQIAIQGPKA 150          
BLAST of FC868658 vs. ExPASy Swiss-Prot
Match: GCST_RUBXD (Aminomethyltransferase OS=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) GN=gcvT PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 5.593e-20
Identity = 60/156 (38.46%), Postives = 85/156 (54.49%), Query Frame = 2
Query:  218 LKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLA 685
            L++T L++ H A G ++V FAGW MP+QY     E     R    LFDVSHM  ++ +G D    L++L+  DV+ L  G         E+GG++DD VI   + +   +VVNA  R+KDLAH   H      +  D +    +E +LLALQGP A
Sbjct:    9 LRRTPLYEEHRALGARLVDFAGWEMPVQYAGIKAEHEA-VRTRAGLFDVSHMGEVAFRGPDAERALQRLLTRDVSRLGEGQAGYAAVCLESGGTVDD-VIAYRRGEGFLVVVNAANREKDLAHFRRHTADLDVEISDET----EEWALLALQGPEA 158          
BLAST of FC868658 vs. ExPASy Swiss-Prot
Match: GCST_CHLTE (Aminomethyltransferase OS=Chlorobium tepidum GN=gcvT PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 5.593e-20
Identity = 58/154 (37.66%), Postives = 85/154 (55.19%), Query Frame = 2
Query:  218 LKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGP 679
            +KKTAL  +H A G KM+ F G+ MP+QY   I E     R+   LFDVSHM    ++G   + FL+ +   D+A +  G    T+    +GG +DD +I +V  D  +L+VNA   +KD   + +H+  F  +G  +  H   E SL+ALQGP
Sbjct:    1 MKKTALSAWHEAAGAKMIDFGGFLMPVQYTGIIAEHKA-VREAAGLFDVSHMGNFYVRGARALEFLQYMTTNDLAKIVDGQAQYTLMLYPDGGIVDDLIIYRVSADTFFLIVNASNCEKDFDWLSSHIGQF--EGVALENHT-SELSLIALQGP 150          
BLAST of FC868658 vs. ExPASy Swiss-Prot
Match: GCST_BACWK (Aminomethyltransferase OS=Bacillus weihenstephanensis (strain KBAB4) GN=gcvT PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 5.593e-20
Identity = 61/156 (39.10%), Postives = 87/156 (55.77%), Query Frame = 2
Query:  218 LKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLA 685
            L++T L D +   GGK V F GW +P+Q+  SI E     R    LFDVSHM  + +KG D + FL+++V  DV+ L  G    T    ENGG++DD +I K  ++   LV+NA   +KD   + +H+    AK  +VS     E + LA+QGP A
Sbjct:    4 LQRTPLFDVYAKYGGKTVDFGGWELPVQFS-SIKEEHEAVRTGAGLFDVSHMGEVEVKGVDSLAFLQRVVTNDVSTLKVGGAQYTAMCYENGGTVDDLLIYKRGEEDYLLVINASNIEKDYEWLASHVIG-DAKVVNVS----SEVAQLAIQGPKA 153          
BLAST of FC868658 vs. ExPASy Swiss-Prot
Match: GCST_STRM5 (Aminomethyltransferase OS=Stenotrophomonas maltophilia (strain R551-3) GN=gcvT PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 7.304e-20
Identity = 61/156 (39.10%), Postives = 83/156 (53.21%), Query Frame = 2
Query:  221 KKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGL-APGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLA 685
            +KT L+D H A G KMV F GW MPI Y   + E  L  R++G +FDVSHM  + L+G    PFL +L+   V  L   G    +   N  GG IDD ++  + DD   +VVNA  R+KDLA +      F      V+     + ++LA+QGP A
Sbjct:    3 QKTLLNDTHRALGAKMVDFGGWDMPIHYGSQLDEHHLVRRESG-VFDVSHMTVVDLRGDQVKPFLRRLLANSVDKLKVTGKALYSCMLNPRGGVIDDLIVYYLGDDFFRMVVNASTREKDLAWLREQAAPF-----GVTVEQRPDLAILAVQGPQA 152          
BLAST of FC868658 vs. ExPASy Swiss-Prot
Match: GCST_PROMA (Aminomethyltransferase OS=Prochlorococcus marinus GN=gcvT PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 7.304e-20
Identity = 61/164 (37.20%), Postives = 88/164 (53.66%), Query Frame = 2
Query:  221 KKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKV------KDDHIYLVVNAGCRDKDLAHIEAH-----MKSFTAKGGDVSWHIHDERSLLALQGP 679
            K T L++  +  G +MV FAGW+MPIQ+   I E     R+N  +FD+SHM   S++GK+    L+ LV +D+  + PG    TV  N +GG IDD ++  +       ++ I +V+NAGC   D+  I+ H     +K   AKG  V         LLALQGP
Sbjct:    4 KNTPLYETCLNEGARMVEFAGWNMPIQFSGLINEHNA-VRKNSGIFDISHMGVFSIQGKNPKDALQTLVPSDLHRIGPGEACYTVLLNNDGGIIDDLIVYDLGTNDPNNEECILIVINAGCTQADIDWIKEHLSDKNLKVCNAKGDGV---------LLALQGP 157          
BLAST of FC868658 vs. ExPASy Swiss-Prot
Match: GCST_BACCZ (Aminomethyltransferase OS=Bacillus cereus (strain ZK / E33L) GN=gcvT PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 7.304e-20
Identity = 57/156 (36.54%), Postives = 86/156 (55.13%), Query Frame = 2
Query:  218 LKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLA 685
            L++T L D +   GGK + F GW +P+Q+  SI E     R    LFDVSHM  + +KG D + FL+++V  DV+ L  G    T    ENGG++DD +I K  ++   LV+NA   +KD   + +H+      G     ++ +E + LA+QGP A
Sbjct:    4 LQRTPLFDVYAKYGGKTIDFGGWELPVQFS-SIKEEHEAVRTAAGLFDVSHMGEVEVKGVDSLAFLQRVVTNDVSTLKVGGAQYTAMCYENGGTVDDLLIYKRGEEDYLLVINASNIEKDYEWLASHV-----IGDATVVNVSNEVAQLAIQGPKA 153          
BLAST of FC868658 vs. ExPASy Swiss-Prot
Match: GCST_ALKOO (Aminomethyltransferase OS=Alkaliphilus oremlandii (strain OhILAs) GN=gcvT PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 7.304e-20
Identity = 58/156 (37.18%), Postives = 84/156 (53.85%), Query Frame = 2
Query:  218 LKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLA 685
            LK+T L D H   GGK+V FAGW M +Q++    E     R    +FDVSHM  + ++GKD   F++ LV  DVA L       T     +GG +DD ++ K   ++ YLVVNA   DKD A +  +  ++  +  ++S    D  S +A+QGP A
Sbjct:    4 LKRTPLFDAHNRYGGKLVDFAGWEMSVQFEGLTAEHEA-VRNAAGIFDVSHMGEIEVRGKDAEAFVQYLVTNDVAALEDNQIVYTFMCYPDGGIVDDLLVYKFNKEYYYLVVNASNSDKDFAWMNENKGAYDVEIINIS----DSVSQVAVQGPKA 154          
BLAST of FC868658 vs. ExPASy Swiss-Prot
Match: GCST_SHEHH (Aminomethyltransferase OS=Shewanella halifaxensis (strain HAW-EB4) GN=gcvT PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 9.540e-20
Identity = 59/155 (38.06%), Postives = 82/155 (52.90%), Query Frame = 2
Query:  224 KTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGL-APGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLA 685
            KT L + H+ + GKMV F GW MP+ Y   I E     RQ+  +FDVSHM  + + G D   FL KL+  DVA L  PG        + NGG IDD +   + D    +VVN+  R+KDLA I   +  F+ +  +       E +++A+QGP A
Sbjct:    4 KTVLFNKHLESNGKMVDFHGWDMPLNYGSQIEEHHA-VRQDAGMFDVSHMTVVDVIGDDACAFLRKLLANDVAKLKVPGKALYGGMLDHNGGVIDDLITYYLSDTEYRIVVNSATREKDLAWINEQVNGFSVEVTE-----RPELAMIAVQGPNA 152          
BLAST of FC868658 vs. ExPASy Swiss-Prot
Match: GCST_DESHY (Aminomethyltransferase OS=Desulfitobacterium hafniense (strain Y51) GN=gcvT PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 9.540e-20
Identity = 57/156 (36.54%), Postives = 83/156 (53.21%), Query Frame = 2
Query:  218 LKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLA 685
            LK+T L++ H   G K++ F GW MP+QY   ++E     R    LFDVSHM  + LKGKD + FL+ L+  DV+ +       +      GG +DD ++ +   +H  LVVNA   DKD A ++A  + F     + S     + + LALQGP A
Sbjct:    4 LKRTPLYEQHRRAGAKLIDFGGWEMPVQYA-GVIEEHKAVRSKAGLFDVSHMGEVELKGKDSLAFLQYLLTNDVSRIQDNQIQYSPMCTSAGGVVDDLLVYRYSREHFLLVVNAANTDKDFAWMQAQAEGFEISLENRS----GDFAQLALQGPWA 154          
The following BLAST results are available for this feature:
BLAST of FC868658 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 330
Match NameE-valueIdentityDescription
GCST_BDEBA4.282e-2040.63Aminomethyltransferase OS=Bdellovibrio bacteriovor... [more]
GCST_RUBXD5.593e-2038.46Aminomethyltransferase OS=Rubrobacter xylanophilus... [more]
GCST_CHLTE5.593e-2037.66Aminomethyltransferase OS=Chlorobium tepidum GN=gc... [more]
GCST_BACWK5.593e-2039.10Aminomethyltransferase OS=Bacillus weihenstephanen... [more]
GCST_STRM57.304e-2039.10Aminomethyltransferase OS=Stenotrophomonas maltoph... [more]
GCST_PROMA7.304e-2037.20Aminomethyltransferase OS=Prochlorococcus marinus ... [more]
GCST_BACCZ7.304e-2036.54Aminomethyltransferase OS=Bacillus cereus (strain ... [more]
GCST_ALKOO7.304e-2037.18Aminomethyltransferase OS=Alkaliphilus oremlandii ... [more]
GCST_SHEHH9.540e-2038.06Aminomethyltransferase OS=Shewanella halifaxensis ... [more]
GCST_DESHY9.540e-2036.54Aminomethyltransferase OS=Desulfitobacterium hafni... [more]

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Properties
Property NameValue
Genbank descriptionC31003B08EF AbioticL1 Citrus clementina cDNA clone C31003B08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868658 ID=FC868658; Name=FC868658; organism=Citrus clementina; type=EST; length=685bp
GNAGCACCGCTCTCTCTGTGTATTCCTGGAGATGCTCTTTCGGGCTCCCA
GATTTGCTTGTTTCTGAGATAAAGAAGAAAACCCCATCTCTATATTTATA
TCGAATAAAATGAGAGGAGGGAGTCTGTGGCAGCTTGGACAATCGATCAC
CCGTCGTTTGGCTCTGGCTGATAAGAAGACTATAGCTCGTAGACACTTTG
CCTCAGATGCTGAAAACCTGAAAAAAACTGCCCTTCATGACTTTCATGTG
GCTAATGGTGGAAAGATGGTTCCATTTGCTGGATGGAGCATGCCTATTCA
GTACAAGGACTCAATTATGGAATCTACTTTGAATTGTCGGCAGAATGGTA
GTCTCTTTGATGTCTCCCATATGTGTGGGCTGAGCCTCAAAGGGAAGGAT
TGCGTCCCTTTCCTTGAGAAGCTTGTGATCGCTGATGTTGCTGGACTTGC
CCCAGGAACTGGGACTCTTACAGTCTTTACAAATGAAAATGGGGGTTCAA
TTGATGATTCGGTTATTACCAAGGTGAAGGATGATCACATATACCTTGTT
GTGAATGCTGGCTGCAGGGATAAGGATCTTGCTCACATTGAGGCACATAT
GAAGAGTTTCACAGCCAAAGGTGGGGATGTCTCGTGGCACATCCATGATG
AGAGATCTCTTCTTGCCCTTCAGGGCCCCCTTGCT
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