FC868658

Overview
NameFC868658
Unique NameFC868658
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length685
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868658 vs. ExPASy Swiss-Prot
Match: GCST_BACAN (Aminomethyltransferase OS=Bacillus anthracis GN=gcvT PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 9.540e-20
Identity = 57/156 (36.54%), Postives = 85/156 (54.49%), Query Frame = 2
Query:  218 LKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLA 685
            L++T L D +   GGK + F GW +P+Q+  SI E     R    LFDVSHM  + +KG D + FL+++V  DV+ L  G    T    ENGG++DD +I K  ++   LV+NA   +KD   + +H+      G     ++  E + LA+QGP A
Sbjct:    4 LQRTPLFDVYAKYGGKTIDFGGWELPVQFS-SIKEEHEAVRTAAGLFDVSHMGEVEVKGVDSLAFLQRVVTNDVSTLKVGGAQYTAMCYENGGTVDDLLIYKRGEEDYLLVINASNIEKDYEWLASHV-----IGDATVVNVSSEVAQLAIQGPKA 153          
BLAST of FC868658 vs. ExPASy Swiss-Prot
Match: GCST_BACAH (Aminomethyltransferase OS=Bacillus thuringiensis (strain Al Hakam) GN=gcvT PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 9.540e-20
Identity = 57/156 (36.54%), Postives = 85/156 (54.49%), Query Frame = 2
Query:  218 LKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLA 685
            L++T L D +   GGK + F GW +P+Q+  SI E     R    LFDVSHM  + +KG D + FL+++V  DV+ L  G    T    ENGG++DD +I K  ++   LV+NA   +KD   + +H+      G     ++  E + LA+QGP A
Sbjct:    4 LQRTPLFDVYAKYGGKTIDFGGWELPVQFS-SIKEEHEAVRTAAGLFDVSHMGEVEVKGVDSLAFLQRVVTNDVSTLKVGGAQYTAMCYENGGTVDDLLIYKRGEEDYLLVINASNIEKDYEWLASHV-----IGDATVVNVSSEVAQLAIQGPKA 153          
BLAST of FC868658 vs. ExPASy Swiss-Prot
Match: GCST_BACAC (Aminomethyltransferase OS=Bacillus anthracis (strain CDC 684 / NRRL 3495) GN=gcvT PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 9.540e-20
Identity = 57/156 (36.54%), Postives = 85/156 (54.49%), Query Frame = 2
Query:  218 LKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLA 685
            L++T L D +   GGK + F GW +P+Q+  SI E     R    LFDVSHM  + +KG D + FL+++V  DV+ L  G    T    ENGG++DD +I K  ++   LV+NA   +KD   + +H+      G     ++  E + LA+QGP A
Sbjct:    4 LQRTPLFDVYAKYGGKTIDFGGWELPVQFS-SIKEEHEAVRTAAGLFDVSHMGEVEVKGVDSLAFLQRVVTNDVSTLKVGGAQYTAMCYENGGTVDDLLIYKRGEEDYLLVINASNIEKDYEWLASHV-----IGDATVVNVSSEVAQLAIQGPKA 153          
BLAST of FC868658 vs. ExPASy Swiss-Prot
Match: GCST_BACAA (Aminomethyltransferase OS=Bacillus anthracis (strain A0248) GN=gcvT PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 9.540e-20
Identity = 57/156 (36.54%), Postives = 85/156 (54.49%), Query Frame = 2
Query:  218 LKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLA 685
            L++T L D +   GGK + F GW +P+Q+  SI E     R    LFDVSHM  + +KG D + FL+++V  DV+ L  G    T    ENGG++DD +I K  ++   LV+NA   +KD   + +H+      G     ++  E + LA+QGP A
Sbjct:    4 LQRTPLFDVYAKYGGKTIDFGGWELPVQFS-SIKEEHEAVRTAAGLFDVSHMGEVEVKGVDSLAFLQRVVTNDVSTLKVGGAQYTAMCYENGGTVDDLLIYKRGEEDYLLVINASNIEKDYEWLASHV-----IGDATVVNVSSEVAQLAIQGPKA 153          
BLAST of FC868658 vs. ExPASy Swiss-Prot
Match: GCST_SYNPW (Aminomethyltransferase OS=Synechococcus sp. (strain WH7803) GN=gcvT PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.246e-19
Identity = 63/167 (37.72%), Postives = 89/167 (53.29%), Query Frame = 2
Query:  215 NLKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDH-------IYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERS---LLALQGPLA 685
            +L +T LHD  V  GG+MVPFAGW MP+Q+   + E T   RQ   LFD+SHM  L ++G +    L+ LV  D+  + PG    +V  NE+GG  DD ++  +   +       + +V+NA C   D A I    +  T +G  V+    DE+    LLALQGP A
Sbjct:    2 DLHRTPLHDLCVTTGGRMVPFAGWEMPVQFSGLVAEHTA-VRQRVGLFDISHMGVLRIEGSNPKDALQTLVPTDLHRIGPGQACYSVLLNESGGIRDDLIVYDLGQTNSDQGEASLIVVINAACAAADTAWIS---EQLTPQGLKVT----DEKGDGILLALQGPEA 160          
BLAST of FC868658 vs. ExPASy Swiss-Prot
Match: GCST_MOOTA (Aminomethyltransferase OS=Moorella thermoacetica (strain ATCC 39073) GN=gcvT PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.246e-19
Identity = 60/157 (38.22%), Postives = 83/157 (52.87%), Query Frame = 2
Query:  215 NLKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLA 685
            +LKKT L+  HVA G KMV F GW MP+QY  SI+E     R    LFDVSHM  +++KG D +  ++KL+  D           +     +GG +DD ++    +    LVVNAG  DKD A I+ +   F  +  ++S       + LALQGP A
Sbjct:    3 DLKKTPLYGEHVAAGAKMVEFGGWLMPVQY-SSIIEEHQRVRNCAGLFDVSHMGEITIKGPDALALVQKLLTNDADRATGDRVIYSPMCYPDGGVVDDLLVYPRGEGEYLLVVNAGNIDKDFAWIQENASGFRVEVSNIS----AATAQLALQGPRA 154          
BLAST of FC868658 vs. ExPASy Swiss-Prot
Match: GCST_CHLP8 (Aminomethyltransferase OS=Chlorobaculum parvum (strain NCIB 8327) GN=gcvT PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.246e-19
Identity = 57/156 (36.54%), Postives = 83/156 (53.21%), Query Frame = 2
Query:  218 LKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLA 685
            +KKTAL  +H   G KM+ F G+ MP+QY   I E     R+   LFDVSHM    ++G+  + FL+ +   D+  +  G    T+    +GG +DD +I +V  D  +L+VNA   +KD A +  H+  F    G    +   E SL+ALQGP A
Sbjct:    1 MKKTALSAWHEGAGAKMIDFGGFLMPVQYSGIIAEHKA-VREAAGLFDVSHMGNFYVRGERALEFLQYVTTNDLGKIVDGQAQYTLMLYPDGGIVDDLIIYRVSADTFFLIVNASNCEKDFAWLSDHVGGFE---GVTLENRTSELSLIALQGPKA 152          
BLAST of FC868658 vs. ExPASy Swiss-Prot
Match: GCST_SYNS3 (Aminomethyltransferase OS=Synechococcus sp. (strain CC9311) GN=gcvT PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.627e-19
Identity = 59/163 (36.20%), Postives = 88/163 (53.99%), Query Frame = 2
Query:  227 TALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVI-----TKVKDDH--IYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERS---LLALQGPLA 685
            T LHD  +A GG+MV FAGW MP+Q+   +M      R +  +FD+SHM  L ++G +    L++LV +D+  + PG    +V  NE GG IDD +I     + + + H  + +V+NA C + D A I  H++            + DE+    LLALQGP A
Sbjct:    6 TPLHDLCIAAGGRMVSFAGWEMPVQFS-GLMAEHKAVRSDSGMFDISHMGVLRIEGANPKDALQQLVPSDLHRIGPGQACYSVLLNEQGGIIDDLIIYDLGPSLLDESHETLLVVINAACAETDTAWIRQHLER-------ADLQVLDEKKDGVLLALQGPKA 160          
BLAST of FC868658 vs. ExPASy Swiss-Prot
Match: GCST_SHELP (Aminomethyltransferase OS=Shewanella loihica (strain ATCC BAA-1088 / PV-4) GN=gcvT PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.627e-19
Identity = 60/155 (38.71%), Postives = 82/155 (52.90%), Query Frame = 2
Query:  224 KTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGL-APGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLA 685
            KT L + H+    KMV F GW MP+ Y   I E  +  RQ+  +FDVSHM  + + G +   FL KL+  DVA L  PG        + N G IDD +   + D H  +VVN+  R+KDLA I   +     KG DV+     E +++A+QGP A
Sbjct:    4 KTVLFNKHLEANAKMVDFHGWDMPLNYGSQIEEHHV-VRQDAGMFDVSHMTVVDVTGAEACDFLRKLLANDVAKLKVPGKALYGGMLDHNAGVIDDLITYYLSDTHYRIVVNSATREKDLAWITEQV-----KGYDVTVTERPELAMIAVQGPNA 152          
BLAST of FC868658 vs. ExPASy Swiss-Prot
Match: GCST_TERTT (Aminomethyltransferase OS=Teredinibacter turnerae (strain ATCC 39867 / T7901) GN=gcvT PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.125e-19
Identity = 61/157 (38.85%), Postives = 86/157 (54.78%), Query Frame = 2
Query:  218 LKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGL-APGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLA 685
            LK+T L D H   GGK+V F GW+MP+ Y   I E     R    +FDVSHM  + ++G     FL  L+  DV  L  PG    T   NE+GG IDD ++  + + +  LVVN   R+KDLA I +  +++     DV+     E +++A+QGPLA
Sbjct:    2 LKQTPLFDLHRDMGGKLVDFGGWNMPVNYGSQIEEHHA-VRNGAGMFDVSHMTVVDIQGTGARDFLRYLLANDVDRLKLPGKALYTGMLNESGGVIDDLIVYLMVNGY-RLVVNCATREKDLAWINSQAEAY-----DVTVIERPELAMIAVQGPLA 151          
The following BLAST results are available for this feature:
BLAST of FC868658 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 330
Match NameE-valueIdentityDescription
GCST_BACAN9.540e-2036.54Aminomethyltransferase OS=Bacillus anthracis GN=gc... [more]
GCST_BACAH9.540e-2036.54Aminomethyltransferase OS=Bacillus thuringiensis (... [more]
GCST_BACAC9.540e-2036.54Aminomethyltransferase OS=Bacillus anthracis (stra... [more]
GCST_BACAA9.540e-2036.54Aminomethyltransferase OS=Bacillus anthracis (stra... [more]
GCST_SYNPW1.246e-1937.72Aminomethyltransferase OS=Synechococcus sp. (strai... [more]
GCST_MOOTA1.246e-1938.22Aminomethyltransferase OS=Moorella thermoacetica (... [more]
GCST_CHLP81.246e-1936.54Aminomethyltransferase OS=Chlorobaculum parvum (st... [more]
GCST_SYNS31.627e-1936.20Aminomethyltransferase OS=Synechococcus sp. (strai... [more]
GCST_SHELP1.627e-1938.71Aminomethyltransferase OS=Shewanella loihica (stra... [more]
GCST_TERTT2.125e-1938.85Aminomethyltransferase OS=Teredinibacter turnerae ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC31003B08EF AbioticL1 Citrus clementina cDNA clone C31003B08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868658 ID=FC868658; Name=FC868658; organism=Citrus clementina; type=EST; length=685bp
GNAGCACCGCTCTCTCTGTGTATTCCTGGAGATGCTCTTTCGGGCTCCCA
GATTTGCTTGTTTCTGAGATAAAGAAGAAAACCCCATCTCTATATTTATA
TCGAATAAAATGAGAGGAGGGAGTCTGTGGCAGCTTGGACAATCGATCAC
CCGTCGTTTGGCTCTGGCTGATAAGAAGACTATAGCTCGTAGACACTTTG
CCTCAGATGCTGAAAACCTGAAAAAAACTGCCCTTCATGACTTTCATGTG
GCTAATGGTGGAAAGATGGTTCCATTTGCTGGATGGAGCATGCCTATTCA
GTACAAGGACTCAATTATGGAATCTACTTTGAATTGTCGGCAGAATGGTA
GTCTCTTTGATGTCTCCCATATGTGTGGGCTGAGCCTCAAAGGGAAGGAT
TGCGTCCCTTTCCTTGAGAAGCTTGTGATCGCTGATGTTGCTGGACTTGC
CCCAGGAACTGGGACTCTTACAGTCTTTACAAATGAAAATGGGGGTTCAA
TTGATGATTCGGTTATTACCAAGGTGAAGGATGATCACATATACCTTGTT
GTGAATGCTGGCTGCAGGGATAAGGATCTTGCTCACATTGAGGCACATAT
GAAGAGTTTCACAGCCAAAGGTGGGGATGTCTCGTGGCACATCCATGATG
AGAGATCTCTTCTTGCCCTTCAGGGCCCCCTTGCT
back to top