FC868658

Overview
NameFC868658
Unique NameFC868658
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length685
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868658 vs. ExPASy Swiss-Prot
Match: GCST_SYMTH (Aminomethyltransferase OS=Symbiobacterium thermophilum GN=gcvT PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.125e-19
Identity = 59/161 (36.65%), Postives = 87/161 (54.04%), Query Frame = 2
Query:  212 ENLKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHD---ERSLLALQGPLA 685
            E+LK+T L++ H+  G +MVPF GW MP+QY  S++E     R+   LFDVSHM    ++G   +  ++ +   D A LA G     +   ENG  +DD +I ++ +   +LVVNAG   KD   I    +    + G  +  + D   E +LLALQGP A
Sbjct:    3 ESLKRTPLYELHLKLGARMVPFGGWEMPVQYS-SVIEEHRAVREAAGLFDVSHMGEFEVRGPQALDLIQLVSTNDAAKLAVGRVQYALMCYENGTVVDDILIYRLDEHRYWLVVNAGNTQKDWEWINTARE----RAGLHNLELIDRSAEIALLALQGPKA 158          
BLAST of FC868658 vs. ExPASy Swiss-Prot
Match: GCST_SHEAM (Aminomethyltransferase OS=Shewanella amazonensis (strain ATCC BAA-1098 / SB2B) GN=gcvT PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.125e-19
Identity = 60/155 (38.71%), Postives = 83/155 (53.55%), Query Frame = 2
Query:  224 KTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLA-PGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLA 685
            KT L   H+ +  KMV F GW+MP+ Y   I E     R++  +FDVSHM  + ++G D   FL KL+  D+A L  PG        N +GG IDD +   + D    +VVN+  R+KDLA I        AKG DV+     E +++A+QGP A
Sbjct:    4 KTVLFSKHLESNAKMVDFHGWNMPLNYGSQIEEHHA-VRRDAGMFDVSHMTVVDVEGADARAFLRKLLANDIAKLTVPGKALYGGMLNHDGGVIDDLITYYLSDTQYRVVVNSATREKDLAWIGEQ-----AKGFDVTITERPELAMIAVQGPNA 152          
BLAST of FC868658 vs. ExPASy Swiss-Prot
Match: GCST_SHEB9 (Aminomethyltransferase OS=Shewanella baltica (strain OS195) GN=gcvT PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.776e-19
Identity = 60/155 (38.71%), Postives = 82/155 (52.90%), Query Frame = 2
Query:  224 KTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGL-APGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLA 685
            KT L + H+ +  KMV F GW MP+ Y   I E     RQ+  +FDVSHM  + + G D   FL KL+  DVA L  PG        +EN G IDD +   + D +  +VVN+  R+KDLA I    + F     DV+     E +++A+QGP A
Sbjct:    4 KTILFNKHLESNAKMVDFHGWDMPLNYGSQIEEHNA-VRQDAGMFDVSHMTVVDVIGNDACAFLRKLLANDVAKLKVPGKALYGGMLDENAGVIDDLITYYLTDTNYRVVVNSATREKDLAWIAKQSQGF-----DVTVTERPELAMIAVQGPNA 152          
BLAST of FC868658 vs. ExPASy Swiss-Prot
Match: GCST_SHEB8 (Aminomethyltransferase OS=Shewanella baltica (strain OS185) GN=gcvT PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.776e-19
Identity = 60/155 (38.71%), Postives = 82/155 (52.90%), Query Frame = 2
Query:  224 KTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGL-APGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLA 685
            KT L + H+ +  KMV F GW MP+ Y   I E     RQ+  +FDVSHM  + + G D   FL KL+  DVA L  PG        +EN G IDD +   + D +  +VVN+  R+KDLA I    + F     DV+     E +++A+QGP A
Sbjct:    4 KTILFNKHLESNAKMVDFHGWDMPLNYGSQIEEHNA-VRQDAGMFDVSHMTVVDVIGNDACAFLRKLLANDVAKLKVPGKALYGGMLDENAGVIDDLITYYLTDTNYRVVVNSATREKDLAWIAKQSQGF-----DVTVTERPELAMIAVQGPNA 152          
BLAST of FC868658 vs. ExPASy Swiss-Prot
Match: GCST_SHEB5 (Aminomethyltransferase OS=Shewanella baltica (strain OS155 / ATCC BAA-1091) GN=gcvT PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.776e-19
Identity = 60/155 (38.71%), Postives = 82/155 (52.90%), Query Frame = 2
Query:  224 KTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGL-APGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLA 685
            KT L + H+ +  KMV F GW MP+ Y   I E     RQ+  +FDVSHM  + + G D   FL KL+  DVA L  PG        +EN G IDD +   + D +  +VVN+  R+KDLA I    + F     DV+     E +++A+QGP A
Sbjct:    4 KTILFNKHLESNAKMVDFHGWDMPLNYGSQIEEHNA-VRQDAGMFDVSHMTVVDVIGNDACAFLRKLLANDVAKLKVPGKALYGGMLDENAGVIDDLITYYLTDTNYRVVVNSATREKDLAWIAKQSQGF-----DVTVTERPELAMIAVQGPNA 152          
BLAST of FC868658 vs. ExPASy Swiss-Prot
Match: GCST_SHEB2 (Aminomethyltransferase OS=Shewanella baltica (strain OS223) GN=gcvT PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.776e-19
Identity = 60/155 (38.71%), Postives = 82/155 (52.90%), Query Frame = 2
Query:  224 KTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGL-APGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLA 685
            KT L + H+ +  KMV F GW MP+ Y   I E     RQ+  +FDVSHM  + + G D   FL KL+  DVA L  PG        +EN G IDD +   + D +  +VVN+  R+KDLA I    + F     DV+     E +++A+QGP A
Sbjct:    4 KTILFNKHLESNAKMVDFHGWDMPLNYGSQIEEHNA-VRQDAGMFDVSHMTVVDVIGNDACAFLRKLLANDVAKLKVPGKALYGGMLDENAGVIDDLITYYLTDTNYRVVVNSATREKDLAWIAKQSQGF-----DVTVTERPELAMIAVQGPNA 152          
BLAST of FC868658 vs. ExPASy Swiss-Prot
Match: GCST_CHRVO (Aminomethyltransferase OS=Chromobacterium violaceum GN=gcvT PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.776e-19
Identity = 58/156 (37.18%), Postives = 84/156 (53.85%), Query Frame = 2
Query:  221 KKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLA-PGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLA 685
            K+T L D H+A G KMV FAGW MPI Y   + E  +  R +  +FDVSHM  + + G D   +L+KL+  DVA L   G    +      G  +DD ++      +  +VVNAG  +KDLA +E+    F     DV+  +  + ++LA+QGP A
Sbjct:    5 KRTPLFDAHIAAGAKMVDFAGWEMPIHYGSQLKEHEI-VRSDAGMFDVSHMTVIDITGADAKAWLQKLIANDVAKLGFEGKALYSGMLTPEGTVVDDLIVYLTAYGY-RMVVNAGTTEKDLAWMESQKAGF-----DVALKVRRDLAMLAVQGPKA 153          
BLAST of FC868658 vs. ExPASy Swiss-Prot
Match: GCST_STAS1 (Aminomethyltransferase OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=gcvT PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.625e-19
Identity = 60/159 (37.74%), Postives = 84/159 (52.83%), Query Frame = 2
Query:  209 AENLKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLA 685
            +  LKKT L+   V +G K+V F GW+MP+Q+  SI E     R    LFDVSHM  + +KG D    ++ L+  D   +       T   NE GG IDD +  K++++   LVVNAG  +KD   +    K+F A+  +VS     E   LA+QGP A
Sbjct:    2 SNELKKTPLYQTFVDSGAKIVEFGGWAMPVQFS-SIKEEHNAVRTEMGLFDVSHMGEIIIKGSDASNLVQYLLSNDTDNVTTHKAQYTALCNEQGGIIDDLITYKLEENVYLLVVNAGNTEKDFEWMYEKAKAFDAEVINVS----TEYGQLAIQGPKA 155          
BLAST of FC868658 vs. ExPASy Swiss-Prot
Match: GCST_ENT38 (Aminomethyltransferase OS=Enterobacter sp. (strain 638) GN=gcvT PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.625e-19
Identity = 58/156 (37.18%), Postives = 83/156 (53.21%), Query Frame = 2
Query:  221 KKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGL-APGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLA 685
            ++T L++ H   G +MV F GW MP+ Y   I E     R +  +FDVSHM  + L+G     FL  L+  DVA L  PG    +   N +GG IDD ++    +D   LVVN+  R+KDL+ I  H + +      V   + D+ SL+A+QGP A
Sbjct:    3 QQTPLYEQHTLCGARMVDFHGWMMPLHYGSQIDEHHA-VRTDAGMFDVSHMTIVDLRGSRTREFLRYLLANDVAKLKTPGKALYSGMLNASGGVIDDLIVYYFTEDFFRLVVNSATREKDLSWISQHAEKYA-----VEITVRDDLSLIAVQGPNA 152          
BLAST of FC868658 vs. ExPASy Swiss-Prot
Match: GCST_BACCN (Aminomethyltransferase OS=Bacillus cereus subsp. cytotoxis (strain NVH 391-98) GN=gcvT PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.625e-19
Identity = 56/156 (35.90%), Postives = 85/156 (54.49%), Query Frame = 2
Query:  218 LKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLA 685
            L++T L D +   GGK + F GW +P+Q+  SI E     R    LFDVSHM  + + G D + FL+++V  DV+ L  G    T    ENGG++DD +I K  ++   LV+NA   +KD   + +H+      G     ++ +E + LA+QGP A
Sbjct:    4 LQRTPLFDVYAKYGGKTIDFGGWELPVQFS-SIKEEHEAVRTAAGLFDVSHMGEVEVTGADSLAFLQRVVTNDVSTLKVGGAQYTAMCYENGGTVDDLLIYKRGEEDYLLVINASNIEKDYEWLASHV-----IGDTKVVNVSNEIAQLAIQGPKA 153          
The following BLAST results are available for this feature:
BLAST of FC868658 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 330
Match NameE-valueIdentityDescription
GCST_SYMTH2.125e-1936.65Aminomethyltransferase OS=Symbiobacterium thermoph... [more]
GCST_SHEAM2.125e-1938.71Aminomethyltransferase OS=Shewanella amazonensis (... [more]
GCST_SHEB92.776e-1938.71Aminomethyltransferase OS=Shewanella baltica (stra... [more]
GCST_SHEB82.776e-1938.71Aminomethyltransferase OS=Shewanella baltica (stra... [more]
GCST_SHEB52.776e-1938.71Aminomethyltransferase OS=Shewanella baltica (stra... [more]
GCST_SHEB22.776e-1938.71Aminomethyltransferase OS=Shewanella baltica (stra... [more]
GCST_CHRVO2.776e-1937.18Aminomethyltransferase OS=Chromobacterium violaceu... [more]
GCST_STAS13.625e-1937.74Aminomethyltransferase OS=Staphylococcus saprophyt... [more]
GCST_ENT383.625e-1937.18Aminomethyltransferase OS=Enterobacter sp. (strain... [more]
GCST_BACCN3.625e-1935.90Aminomethyltransferase OS=Bacillus cereus subsp. c... [more]

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Properties
Property NameValue
Genbank descriptionC31003B08EF AbioticL1 Citrus clementina cDNA clone C31003B08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868658 ID=FC868658; Name=FC868658; organism=Citrus clementina; type=EST; length=685bp
GNAGCACCGCTCTCTCTGTGTATTCCTGGAGATGCTCTTTCGGGCTCCCA
GATTTGCTTGTTTCTGAGATAAAGAAGAAAACCCCATCTCTATATTTATA
TCGAATAAAATGAGAGGAGGGAGTCTGTGGCAGCTTGGACAATCGATCAC
CCGTCGTTTGGCTCTGGCTGATAAGAAGACTATAGCTCGTAGACACTTTG
CCTCAGATGCTGAAAACCTGAAAAAAACTGCCCTTCATGACTTTCATGTG
GCTAATGGTGGAAAGATGGTTCCATTTGCTGGATGGAGCATGCCTATTCA
GTACAAGGACTCAATTATGGAATCTACTTTGAATTGTCGGCAGAATGGTA
GTCTCTTTGATGTCTCCCATATGTGTGGGCTGAGCCTCAAAGGGAAGGAT
TGCGTCCCTTTCCTTGAGAAGCTTGTGATCGCTGATGTTGCTGGACTTGC
CCCAGGAACTGGGACTCTTACAGTCTTTACAAATGAAAATGGGGGTTCAA
TTGATGATTCGGTTATTACCAAGGTGAAGGATGATCACATATACCTTGTT
GTGAATGCTGGCTGCAGGGATAAGGATCTTGCTCACATTGAGGCACATAT
GAAGAGTTTCACAGCCAAAGGTGGGGATGTCTCGTGGCACATCCATGATG
AGAGATCTCTTCTTGCCCTTCAGGGCCCCCTTGCT
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