FC868658

Overview
NameFC868658
Unique NameFC868658
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length685
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868658 vs. ExPASy Swiss-Prot
Match: GCST_SYNS9 (Aminomethyltransferase OS=Synechococcus sp. (strain CC9902) GN=gcvT PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.734e-19
Identity = 60/159 (37.74%), Postives = 83/159 (52.20%), Query Frame = 2
Query:  224 KTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKV-----KDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLA 685
            +T L++     GG+MVPFAGW MP+Q+   I E     R +  +FD+SHM  L L+G +    L++LV +D+  + PG    TV  N+ GG  DD +I  +     K   + LV+NA C D D A I   M+      G     I +   LLALQGP A
Sbjct:    3 RTPLYELCRTGGGRMVPFAGWEMPVQFSGLIQEHKA-VRNSVGMFDISHMGVLRLEGANPKDTLQQLVPSDLHRIGPGEACYTVLLNDQGGIRDDLIIYDLGAIDEKRGALVLVINAACADSDTAWIRERME----PAGLTVTDIKNNGVLLALQGPQA 156          
BLAST of FC868658 vs. ExPASy Swiss-Prot
Match: GCST_GLOVI (Aminomethyltransferase OS=Gloeobacter violaceus GN=gcvT PE=3 SV=2)

HSP 1 Score: 94.7449 bits (234), Expect = 4.734e-19
Identity = 58/160 (36.25%), Postives = 80/160 (50.00%), Query Frame = 2
Query:  215 NLKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHD---ERSLLALQGPLA 685
            +LK+T L   H+  G ++VPF GW MP+QY     E     R    LFD+SHM   +L G D +  +++LV +D+A L PG    TV  NE  G IDD +      +H  ++VN    DKD   +  H++           H  D     +LLALQGP A
Sbjct:    3 DLKRTPLCAQHLQLGARLVPFGGWEMPLQYSTLTREHRA-VRTAVGLFDISHMGKYTLSGPDVLAQIQRLVPSDLARLQPGQAQYTVLLNEQAGIIDDLIFYCRSPEHWVVIVNGATNDKDRRWLAEHLQGV---------HFDDLTGTHTLLALQGPAA 152          
BLAST of FC868658 vs. ExPASy Swiss-Prot
Match: GCST_SHESW (Aminomethyltransferase OS=Shewanella sp. (strain W3-18-1) GN=gcvT PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 6.183e-19
Identity = 59/155 (38.06%), Postives = 82/155 (52.90%), Query Frame = 2
Query:  224 KTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGL-APGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLA 685
            KT L + H+ +  KMV F GW MP+ Y   I E     RQ+  +FDVSHM  + + G D   FL KL+  DVA L  PG    +   +EN G IDD +   + D    +VVN+  R+KDLA I    + F     D++     E +++A+QGP A
Sbjct:    4 KTILFNKHLESNAKMVDFHGWDMPLNYGSQIEEHHA-VRQDAGMFDVSHMTVVDVIGTDACAFLRKLLANDVARLKVPGKALYSGMLDENAGIIDDLITYYLTDTFYRVVVNSATREKDLAWIAKQSQGF-----DITVTERPELAMIAVQGPNA 152          
BLAST of FC868658 vs. ExPASy Swiss-Prot
Match: GCST_SHEPC (Aminomethyltransferase OS=Shewanella putrefaciens (strain CN-32 / ATCC BAA-453) GN=gcvT PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 6.183e-19
Identity = 59/155 (38.06%), Postives = 82/155 (52.90%), Query Frame = 2
Query:  224 KTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGL-APGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLA 685
            KT L + H+ +  KMV F GW MP+ Y   I E     RQ+  +FDVSHM  + + G D   FL KL+  DVA L  PG    +   +EN G IDD +   + D    +VVN+  R+KDLA I    + F     D++     E +++A+QGP A
Sbjct:    4 KTILFNKHLESNAKMVDFHGWDMPLNYGSQIEEHHA-VRQDAGMFDVSHMTVVDVIGTDACAFLRKLLANDVARLKVPGKALYSGMLDENAGIIDDLITYYLTDTFYRVVVNSATREKDLAWIAKQSQGF-----DITVTERPELAMIAVQGPNA 152          
BLAST of FC868658 vs. ExPASy Swiss-Prot
Match: GCST_PELPB (Aminomethyltransferase OS=Pelodictyon phaeoclathratiforme (strain DSM 5477 / BU-1) GN=gcvT PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 6.183e-19
Identity = 54/156 (34.62%), Postives = 82/156 (52.56%), Query Frame = 2
Query:  218 LKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLA 685
            +KKTAL+ +H   G K++ F G+ MP+QY+  I E     R    LFDVSHM    ++G     FL+ +   D+     G     +    +GG +DD +I ++  +  +L+VNA    KD   ++ H+ +F    G V     D+ SL+ALQGPLA
Sbjct:    1 MKKTALYSWHEEAGAKIIDFGGYLMPVQYRGIIAEHHA-VRSAAGLFDVSHMGNFYVRGARAKEFLQYMTTNDLDNAEDGQAQYNLMLYPHGGIVDDLIIYRIDSETFFLIVNASNAQKDFEWLQQHIAAFE---GVVLEDHTDQLSLIALQGPLA 152          
BLAST of FC868658 vs. ExPASy Swiss-Prot
Match: GCST_BORA1 (Aminomethyltransferase OS=Bordetella avium (strain 197N) GN=gcvT PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 6.183e-19
Identity = 63/159 (39.62%), Postives = 82/159 (51.57%), Query Frame = 2
Query:  215 NLKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGL-APGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGG-DVSWHIHDERSLLALQGPLA 685
            +LK T L + H+A G +MV F GW MP+ Y  S +E     RQ+  +FDVSHM    + G D   FL  LV  DVA L  PG    +   N  GG IDD +I     D   +VVNAG  +KD+    A M    A G  DV      + +++A+QGP A
Sbjct:    4 SLKHTPLAETHLAAGARMVDFGGWEMPLAY-GSQLEEHHAVRQDAGMFDVSHMLNADITGPDATAFLRYLVANDVARLNTPGKALYSCMLNPQGGVIDDLIIYYFAPDSWRVVVNAGTAEKDM----AWMARVAAAGNFDVVITPRRDLAMIAVQGPNA 157          
BLAST of FC868658 vs. ExPASy Swiss-Prot
Match: GCST_AERS4 (Aminomethyltransferase OS=Aeromonas salmonicida (strain A449) GN=gcvT PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 6.183e-19
Identity = 62/157 (39.49%), Postives = 82/157 (52.23%), Query Frame = 2
Query:  218 LKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLA-PGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLA 685
            ++ T LH  H+  G KMV F GW MPI Y  S +E     R +  +FDVSHM  + L G+    FL+ L+  DVA L  PG    +   N +GG IDD +   + D    LVVN+  R+KDLA I  H   F      VS     E +++A+QGP A
Sbjct:    2 IQTTVLHPKHLEAGAKMVDFHGWEMPINY-GSQLEEHHAVRTDAGMFDVSHMTIVDLTGERVKAFLQHLLANDVAKLTVPGKALYSGMLNPDGGVIDDLITYYLTDTFYRLVVNSATREKDLAWIRHHAIDFA-----VSVTERPELAMIAVQGPNA 152          
BLAST of FC868658 vs. ExPASy Swiss-Prot
Match: GCST_LYSSC (Aminomethyltransferase OS=Lysinibacillus sphaericus (strain C3-41) GN=gcvT PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 8.076e-19
Identity = 57/156 (36.54%), Postives = 81/156 (51.92%), Query Frame = 2
Query:  218 LKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLA 685
            LK+T L + +   G K V F GW +P+Q+  SI +     R    LFDVSHM  + + G D + FL+ L+  DV+ +A G    T    ENGG +DD +  K+ DDH  L VNA   +KD   +  +   +     + S    D  + +ALQGPLA
Sbjct:    5 LKRTPLFEEYAKYGAKTVDFGGWELPVQFS-SIKDEHDAVRNRAGLFDVSHMGEILVTGPDALNFLQNLLSNDVSKIATGQAQYTAMCYENGGVVDDLLTYKLADDHYLLCVNAANIEKDYDWMLENQHQYDVTIDNQS----DAYAQIALQGPLA 155          
BLAST of FC868658 vs. ExPASy Swiss-Prot
Match: GCST_CHLPD (Aminomethyltransferase OS=Chlorobium phaeobacteroides (strain DSM 266) GN=gcvT PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 8.076e-19
Identity = 55/157 (35.03%), Postives = 85/157 (54.14%), Query Frame = 2
Query:  218 LKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDER-SLLALQGPLA 685
            +KKTAL+ +H   G +++ F G+ MP+QY   I E     R    LFDVSHM    + G+    FL+ +V  D++ +  G     +    NGG +DD +I ++     +L+VNA   +KD A ++ H+ +F      V    H +R SL+ALQGP+A
Sbjct:    1 MKKTALYHWHEQAGARIIDFGGYLMPVQYSGIIAEHRA-VRSAAGLFDVSHMGNFYVTGERSEAFLQYMVTNDLSKVRDGEAQYNLMLYPNGGVVDDLIIYRLDSKTFFLIVNASNTEKDYAWLQQHIGAFDG----VCLEDHTDRLSLIALQGPVA 152          
BLAST of FC868658 vs. ExPASy Swiss-Prot
Match: GCST_CHLL2 (Aminomethyltransferase OS=Chlorobium limicola (strain DSM 245 / NBRC 103803) GN=gcvT PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 8.076e-19
Identity = 55/156 (35.26%), Postives = 85/156 (54.49%), Query Frame = 2
Query:  218 LKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLA 685
            +KKTAL+ +H   G K++ F G+ MP+QY   I E     R+   LFDVSHM    ++G     FL+ L   D++ ++ G     +    +GG +DD +I ++  +  +L+VNA    KD A I+ H+ +F    G       DE SL+ALQGP++
Sbjct:    1 MKKTALYSWHEQAGAKIIDFGGYLMPVQYSGIIAEHKA-VREAAGLFDVSHMGNFYVRGVRAGEFLQYLTTNDLSKVSDGEAQYNLMLYTDGGVVDDLIIYRIDAETYFLIVNASNAQKDYAWIQKHIGAFE---GVSLEDRTDELSLVALQGPMS 152          
The following BLAST results are available for this feature:
BLAST of FC868658 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 330
Match NameE-valueIdentityDescription
GCST_SYNS94.734e-1937.74Aminomethyltransferase OS=Synechococcus sp. (strai... [more]
GCST_GLOVI4.734e-1936.25Aminomethyltransferase OS=Gloeobacter violaceus GN... [more]
GCST_SHESW6.183e-1938.06Aminomethyltransferase OS=Shewanella sp. (strain W... [more]
GCST_SHEPC6.183e-1938.06Aminomethyltransferase OS=Shewanella putrefaciens ... [more]
GCST_PELPB6.183e-1934.62Aminomethyltransferase OS=Pelodictyon phaeoclathra... [more]
GCST_BORA16.183e-1939.62Aminomethyltransferase OS=Bordetella avium (strain... [more]
GCST_AERS46.183e-1939.49Aminomethyltransferase OS=Aeromonas salmonicida (s... [more]
GCST_LYSSC8.076e-1936.54Aminomethyltransferase OS=Lysinibacillus sphaericu... [more]
GCST_CHLPD8.076e-1935.03Aminomethyltransferase OS=Chlorobium phaeobacteroi... [more]
GCST_CHLL28.076e-1935.26Aminomethyltransferase OS=Chlorobium limicola (str... [more]

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Properties
Property NameValue
Genbank descriptionC31003B08EF AbioticL1 Citrus clementina cDNA clone C31003B08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868658 ID=FC868658; Name=FC868658; organism=Citrus clementina; type=EST; length=685bp
GNAGCACCGCTCTCTCTGTGTATTCCTGGAGATGCTCTTTCGGGCTCCCA
GATTTGCTTGTTTCTGAGATAAAGAAGAAAACCCCATCTCTATATTTATA
TCGAATAAAATGAGAGGAGGGAGTCTGTGGCAGCTTGGACAATCGATCAC
CCGTCGTTTGGCTCTGGCTGATAAGAAGACTATAGCTCGTAGACACTTTG
CCTCAGATGCTGAAAACCTGAAAAAAACTGCCCTTCATGACTTTCATGTG
GCTAATGGTGGAAAGATGGTTCCATTTGCTGGATGGAGCATGCCTATTCA
GTACAAGGACTCAATTATGGAATCTACTTTGAATTGTCGGCAGAATGGTA
GTCTCTTTGATGTCTCCCATATGTGTGGGCTGAGCCTCAAAGGGAAGGAT
TGCGTCCCTTTCCTTGAGAAGCTTGTGATCGCTGATGTTGCTGGACTTGC
CCCAGGAACTGGGACTCTTACAGTCTTTACAAATGAAAATGGGGGTTCAA
TTGATGATTCGGTTATTACCAAGGTGAAGGATGATCACATATACCTTGTT
GTGAATGCTGGCTGCAGGGATAAGGATCTTGCTCACATTGAGGCACATAT
GAAGAGTTTCACAGCCAAAGGTGGGGATGTCTCGTGGCACATCCATGATG
AGAGATCTCTTCTTGCCCTTCAGGGCCCCCTTGCT
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