FC868658

Overview
NameFC868658
Unique NameFC868658
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length685
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868658 vs. ExPASy Swiss-Prot
Match: GCST_SODGM (Aminomethyltransferase OS=Sodalis glossinidius (strain morsitans) GN=gcvT PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.055e-18
Identity = 58/156 (37.18%), Postives = 85/156 (54.49%), Query Frame = 2
Query:  221 KKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLA-PGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLA 685
            ++T L++ H A+G KMV F GW MP+ Y   + E     R++  +FDVSHM  + L G     FL  L+  DVA L  PG    T   N +GG IDD ++  + +    LVVN+  RDKD+  I  H + +      V+  + D+ +L+A+QGP A
Sbjct:    3 QQTPLYEEHHASGAKMVDFHGWMMPLHYGSQLDEHH-QVRRDVGMFDVSHMTIVDLAGPRTRDFLRHLLANDVAKLTVPGKALYTGMLNASGGVIDDLIVYFLSEIEFRLVVNSETRDKDVEWITRHAEPY-----QVTVTVRDDLALIAVQGPQA 152          
BLAST of FC868658 vs. ExPASy Swiss-Prot
Match: GCST_SHESR (Aminomethyltransferase OS=Shewanella sp. (strain MR-7) GN=gcvT PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.055e-18
Identity = 59/155 (38.06%), Postives = 81/155 (52.26%), Query Frame = 2
Query:  224 KTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGL-APGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLA 685
            KT L + H+ +  KMV F GW MP+ Y   I E     RQ+  +FDVSHM  + + G D   FL KL+  DVA L  PG        ++N G IDD +   + D    +VVN+  R+KDLA I    + F     DV+     E +++A+QGP A
Sbjct:    4 KTVLFNKHLESNAKMVDFHGWDMPLNYGSQIEEHHA-VRQDAGMFDVSHMTVVDVTGTDACAFLRKLLANDVAKLKVPGKALYGGMLDDNAGIIDDLITYYLTDTFYRVVVNSATREKDLAWIAKQSQGF-----DVTVTERPELAMIAVQGPNA 152          
BLAST of FC868658 vs. ExPASy Swiss-Prot
Match: GCST_SHESM (Aminomethyltransferase OS=Shewanella sp. (strain MR-4) GN=gcvT PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.055e-18
Identity = 59/155 (38.06%), Postives = 81/155 (52.26%), Query Frame = 2
Query:  224 KTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGL-APGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLA 685
            KT L + H+ +  KMV F GW MP+ Y   I E     RQ+  +FDVSHM  + + G D   FL KL+  DVA L  PG        ++N G IDD +   + D    +VVN+  R+KDLA I    + F     DV+     E +++A+QGP A
Sbjct:    4 KTVLFNKHLESNAKMVDFHGWDMPLNYGSQIEEHHA-VRQDAGMFDVSHMTVVDVTGTDACAFLRKLLANDVAKLKVPGKALYGGMLDDNAGIIDDLITYYLTDTFYRVVVNSATREKDLAWIAKQSQGF-----DVTVTERPELAMIAVQGPNA 152          
BLAST of FC868658 vs. ExPASy Swiss-Prot
Match: GCST_SHESA (Aminomethyltransferase OS=Shewanella sp. (strain ANA-3) GN=gcvT PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.055e-18
Identity = 59/155 (38.06%), Postives = 81/155 (52.26%), Query Frame = 2
Query:  224 KTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGL-APGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLA 685
            KT L + H+ +  KMV F GW MP+ Y   I E     RQ+  +FDVSHM  + + G D   FL KL+  DVA L  PG        ++N G IDD +   + D    +VVN+  R+KDLA I    + F     DV+     E +++A+QGP A
Sbjct:    4 KTVLFNKHLESNAKMVDFHGWDMPLNYGSQIEEHHA-VRQDAGMFDVSHMTVVDVTGTDACAFLRKLLANDVAKLKVPGKALYGGMLDDNAGIIDDLITYYLTDTFYRVVVNSATREKDLAWIAKQSQGF-----DVTVTERPELAMIAVQGPNA 152          
BLAST of FC868658 vs. ExPASy Swiss-Prot
Match: GCST_SHEON (Aminomethyltransferase OS=Shewanella oneidensis GN=gcvT PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.055e-18
Identity = 59/155 (38.06%), Postives = 81/155 (52.26%), Query Frame = 2
Query:  224 KTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGL-APGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLA 685
            KT L + H+ +  KMV F GW MP+ Y   I E     RQ+  +FDVSHM  + + G D   FL KL+  DVA L  PG        ++N G IDD +   + D    +VVN+  R+KDLA I    + F     DV+     E +++A+QGP A
Sbjct:    4 KTVLFNKHLESNAKMVDFHGWDMPLNYGSQIEEHHA-VRQDAGMFDVSHMTVVDVTGTDACAFLRKLLANDVAKLKVPGKALYGGMLDDNAGIIDDLITYYLTDTFYRVVVNSATREKDLAWIAKQSQGF-----DVTVTERPELAMIAVQGPNA 152          
BLAST of FC868658 vs. ExPASy Swiss-Prot
Match: GCST_SHEDO (Aminomethyltransferase OS=Shewanella denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013) GN=gcvT PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.055e-18
Identity = 59/155 (38.06%), Postives = 81/155 (52.26%), Query Frame = 2
Query:  224 KTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGL-APGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLA 685
            KT L   H+ +  KMV F GW MP+ Y   I E     RQ+  +FDVSHM  + + G+D   FL KL+  DVA L  PG        ++N G IDD +   + D H  +VVN+  R+KDLA I      F+     V+     E +++A+QGP A
Sbjct:    4 KTVLFHKHLESNAKMVDFHGWDMPLNYGSQIEEHHA-VRQDAGMFDVSHMTVVDVTGQDARDFLRKLLANDVAKLTVPGKALYGGMLDDNAGVIDDLITYYLSDTHYRVVVNSATREKDLAWIAKQSAPFS-----VTITERPELAMIAVQGPNA 152          
BLAST of FC868658 vs. ExPASy Swiss-Prot
Match: GCST_ACIC5 (Aminomethyltransferase OS=Acidobacterium capsulatum (strain ATCC 51196 / DSM 11244 / JCM 7670) GN=gcvT PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.055e-18
Identity = 55/156 (35.26%), Postives = 81/156 (51.92%), Query Frame = 2
Query:  218 LKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLA 685
            L+KTAL+  H   G KMV F GW MP++Y   I E  +  R    LFDVSHM  + L+G   +  ++ + + D + LA G    +      G  +DD ++ K  D+   +V+NAG R+KD   I +H + F     + S    D  + LA+QGP A
Sbjct:    9 LRKTALNAVHRRLGAKMVDFGGWDMPVEYSGLIAEH-MAVRTGVGLFDVSHMGDIQLRGPGSLDAVQHICMNDASKLAVGQAHYSAMLYPQGTFVDDVIVHKFSDNDYLIVINAGTREKDYEWIRSHAQPFHCHVSNYS----DLYTQLAIQGPRA 159          
BLAST of FC868658 vs. ExPASy Swiss-Prot
Match: GCST_THISH (Aminomethyltransferase OS=Thioalkalivibrio sp. (strain HL-EbGR7) GN=gcvT PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.378e-18
Identity = 57/154 (37.01%), Postives = 81/154 (52.60%), Query Frame = 2
Query:  221 KKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGL-APGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGP 679
            K+T L++ H+  G +MV F GWSMP+ Y   I E     R++  +FDVSHM  + ++G     +L  L+  DVA L  PG    +      GG +DD +   + D    LVVNA  RDKDLA +        A G DV     D+ +++A+QGP
Sbjct:    3 KQTPLYEKHLEAGARMVDFGGWSMPLHYGSQIEEHHA-VRRDAGMFDVSHMTVVDVQGNGARDYLRFLLANDVAKLKVPGKALYSCMLTPEGGVVDDLITYYLSDTFYRLVVNAATRDKDLAWMRDR-----ATGFDVLLQERDDLAMVAVQGP 150          
BLAST of FC868658 vs. ExPASy Swiss-Prot
Match: GCST_PSEAE (Aminomethyltransferase OS=Pseudomonas aeruginosa GN=gcvT PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.799e-18
Identity = 58/156 (37.18%), Postives = 85/156 (54.49%), Query Frame = 2
Query:  224 KTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAP-GTGTLTVFTNENGGSIDDSVITKVKDDHIY-LVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLA 685
            +T L++ HVA G KMV F GW MP+ Y   + E     R++  +FDVSHM  + + G+    +L+ L+  DVA L   G    +   NE GG +DD ++     +H Y +VVNA  RDKD+A ++A      A G  V      + ++LA+QGP A
Sbjct:    4 RTPLYELHVALGAKMVDFGGWDMPLHYGSQVEEHH-QVRRDCGVFDVSHMTVVDVAGEQATAYLQHLLANDVARLGETGKALYSAMLNEEGGVVDDLIVYLT--EHGYRVVVNASTRDKDIAWMQAQ-----AAGFKVDLQERGDLAMLAIQGPNA 151          
BLAST of FC868658 vs. ExPASy Swiss-Prot
Match: GCST_PELLD (Aminomethyltransferase OS=Pelodictyon luteolum (strain DSM 273) GN=gcvT PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.799e-18
Identity = 54/156 (34.62%), Postives = 78/156 (50.00%), Query Frame = 2
Query:  218 LKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLA 685
            +KKTAL+ +H   G +++ F GW MP+QY   I E     R    LFDVSHM    +KG     FL+ +   D++    G     V    NGG +DD +I ++     +++VNAG  +KD   ++ H   +    G V        SL+ALQGP A
Sbjct:    1 MKKTALYPWHEKAGARIIDFGGWLMPVQYSGIIAEHRA-VRSAAGLFDVSHMGNFYVKGPRAEEFLQHMTTNDLSRAKNGQAQYNVMLYPNGGIVDDLIIYRIDAQTFFIIVNAGNCEKDYQWLQEHAAEY---DGVVLEDHSSAMSLIALQGPKA 152          
The following BLAST results are available for this feature:
BLAST of FC868658 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 330
Match NameE-valueIdentityDescription
GCST_SODGM1.055e-1837.18Aminomethyltransferase OS=Sodalis glossinidius (st... [more]
GCST_SHESR1.055e-1838.06Aminomethyltransferase OS=Shewanella sp. (strain M... [more]
GCST_SHESM1.055e-1838.06Aminomethyltransferase OS=Shewanella sp. (strain M... [more]
GCST_SHESA1.055e-1838.06Aminomethyltransferase OS=Shewanella sp. (strain A... [more]
GCST_SHEON1.055e-1838.06Aminomethyltransferase OS=Shewanella oneidensis GN... [more]
GCST_SHEDO1.055e-1838.06Aminomethyltransferase OS=Shewanella denitrificans... [more]
GCST_ACIC51.055e-1835.26Aminomethyltransferase OS=Acidobacterium capsulatu... [more]
GCST_THISH1.378e-1837.01Aminomethyltransferase OS=Thioalkalivibrio sp. (st... [more]
GCST_PSEAE1.799e-1837.18Aminomethyltransferase OS=Pseudomonas aeruginosa G... [more]
GCST_PELLD1.799e-1834.62Aminomethyltransferase OS=Pelodictyon luteolum (st... [more]

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Properties
Property NameValue
Genbank descriptionC31003B08EF AbioticL1 Citrus clementina cDNA clone C31003B08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868658 ID=FC868658; Name=FC868658; organism=Citrus clementina; type=EST; length=685bp
GNAGCACCGCTCTCTCTGTGTATTCCTGGAGATGCTCTTTCGGGCTCCCA
GATTTGCTTGTTTCTGAGATAAAGAAGAAAACCCCATCTCTATATTTATA
TCGAATAAAATGAGAGGAGGGAGTCTGTGGCAGCTTGGACAATCGATCAC
CCGTCGTTTGGCTCTGGCTGATAAGAAGACTATAGCTCGTAGACACTTTG
CCTCAGATGCTGAAAACCTGAAAAAAACTGCCCTTCATGACTTTCATGTG
GCTAATGGTGGAAAGATGGTTCCATTTGCTGGATGGAGCATGCCTATTCA
GTACAAGGACTCAATTATGGAATCTACTTTGAATTGTCGGCAGAATGGTA
GTCTCTTTGATGTCTCCCATATGTGTGGGCTGAGCCTCAAAGGGAAGGAT
TGCGTCCCTTTCCTTGAGAAGCTTGTGATCGCTGATGTTGCTGGACTTGC
CCCAGGAACTGGGACTCTTACAGTCTTTACAAATGAAAATGGGGGTTCAA
TTGATGATTCGGTTATTACCAAGGTGAAGGATGATCACATATACCTTGTT
GTGAATGCTGGCTGCAGGGATAAGGATCTTGCTCACATTGAGGCACATAT
GAAGAGTTTCACAGCCAAAGGTGGGGATGTCTCGTGGCACATCCATGATG
AGAGATCTCTTCTTGCCCTTCAGGGCCCCCTTGCT
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