FC868658

Overview
NameFC868658
Unique NameFC868658
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length685
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868658 vs. ExPASy Swiss-Prot
Match: GCST_SYNPX (Aminomethyltransferase OS=Synechococcus sp. (strain WH8102) GN=gcvT PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.350e-18
Identity = 58/159 (36.48%), Postives = 82/159 (51.57%), Query Frame = 2
Query:  218 LKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVI-----TKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGP 679
            L++T LH      GG+MVPFAGW MP+Q+   I E     R+   +FD+SHM  L L+G +    L++LV +D+  + PG    TV  NE+GG  DD ++        +   + LV+NA C + D A I   M+       D    +     LLALQGP
Sbjct:    3 LQRTPLHQLCQDGGGRMVPFAGWEMPVQFSGLIQEHKA-VREQVGMFDISHMGVLRLEGPNPKDALQQLVPSDLHRIGPGEACYTVLLNESGGIRDDLIVYDCGAVDAERGALVLVINAACAEADTAWIRDQMEPAGLTVSD----LKAGGVLLALQGP 156          
BLAST of FC868658 vs. ExPASy Swiss-Prot
Match: GCST_ERWT9 (Aminomethyltransferase OS=Erwinia tasmaniensis (strain DSM 17950 / Et1/99) GN=gcvT PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.350e-18
Identity = 59/156 (37.82%), Postives = 83/156 (53.21%), Query Frame = 2
Query:  221 KKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLA-PGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLA 685
            ++T L   H A+G +MV F GW MP+ Y  S M+     R++  +FDVSHM  + L G     FL  L+  DVA L  PG    +   N + G IDD ++  + +D   LVVN+  R+KDLA I  H  ++      V     D+ SL+A+QGP A
Sbjct:    3 QQTPLFAQHQASGARMVDFHGWMMPLHY-GSQMDEHHAVRRDAGMFDVSHMTIVDLHGARTREFLRYLLANDVAKLTQPGKALYSAMLNASAGVIDDLIVYFISEDFFRLVVNSATREKDLAWIVEHAAAY-----GVQLTERDDLSLIAVQGPNA 152          
BLAST of FC868658 vs. ExPASy Swiss-Prot
Match: GCST_ALTMD (Aminomethyltransferase OS=Alteromonas macleodii (strain DSM 17117 / Deep ecotype) GN=gcvT PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.350e-18
Identity = 58/154 (37.66%), Postives = 83/154 (53.90%), Query Frame = 2
Query:  227 TALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLA-PGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLA 685
            TALH  H+  G KMV F GW MPI Y   I E     RQ+  +FDVSHM  + +KG     +L+ L+  DVA L   G    +   NE GG +DD ++    + +  LVVN+  R+KD+  + +      A+G DV+     E +++A+QGP A
Sbjct:    5 TALHTKHLEAGAKMVDFFGWDMPINYGSQIEEHHA-VRQDAGMFDVSHMTIVDVKGAQAKAYLQYLLANDVAKLKDKGKALYSGMLNEEGGVVDDLIVYHFDETNYRLVVNSATREKDMNWLMS-----KAEGFDVTITERPEFAMIAVQGPNA 152          
BLAST of FC868658 vs. ExPASy Swiss-Prot
Match: GCST_SYNR3 (Aminomethyltransferase OS=Synechococcus sp. (strain RCC307) GN=gcvT PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.008e-18
Identity = 57/146 (39.04%), Postives = 80/146 (54.79%), Query Frame = 2
Query:  257 GGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERS---LLALQGPLA 685
            GG+MVPFAGW M +Q+ + +M      RQ   +FD+SHM  L+L G      L+ LV +D+  + PG    TV  NE GG  DD ++    D  + +V+NA C D D A I+  ++    +G  VS    D ++   LLALQGP A
Sbjct:   14 GGRMVPFAGWEMAVQF-EGLMAEHRAVRQRCGVFDISHMGVLTLTGSGVKDKLQGLVPSDLQRIGPGEAQYTVLLNEAGGIRDDLIVYDRSDTEVVVVINAACADSDTAWIKQQLE---PQGVSVS----DRKAGGVLLALQGPEA 151          
BLAST of FC868658 vs. ExPASy Swiss-Prot
Match: GCST_PSEA6 (Aminomethyltransferase OS=Pseudoalteromonas atlantica (strain T6c / BAA-1087) GN=gcvT PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.008e-18
Identity = 57/155 (36.77%), Postives = 81/155 (52.26%), Query Frame = 2
Query:  224 KTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAP-GTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLA 685
            KT LH  H+ +G KMV F GW MPI Y   I E     R+   +FDVSHM  + + G+    +L  L+  DVA L   G    +   NE GG +DD ++   +  +  LVVN+  R KD+  + A      A+G DV+     E +++A+QGP A
Sbjct:    4 KTVLHSKHLESGAKMVDFHGWEMPINYGSQIEEHHA-VRRTAGMFDVSHMTIVDVVGEQAQDYLRHLLANDVAKLKERGKALYSGMLNEEGGVVDDLIVYHFETTNYRLVVNSATRQKDMDWLNAQ-----AEGFDVTITERPEFAMIAVQGPQA 152          
BLAST of FC868658 vs. ExPASy Swiss-Prot
Match: GCST_BACFR (Aminomethyltransferase OS=Bacteroides fragilis GN=gcvT PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.008e-18
Identity = 58/156 (37.18%), Postives = 85/156 (54.49%), Query Frame = 2
Query:  218 LKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLA 685
            +K T   + H+A G KM  FAG++MPI+Y   I E    C   G +FDVSHM    +KG   + FL+K+   +VA L PG    T F NE+GG +DD ++ + + +   LVVNA   +KD     +H      +G ++  +  D  + LA+QGP A
Sbjct:    1 MKTTPFTEKHIALGAKMHEFAGYNMPIEYSGIIDEHLTVCNGVG-VFDVSHMGEFWVKGPHALDFLQKVTSNNVAALVPGKIQYTCFPNEDGGIVDDLLVYQYEPEKYLLVVNASNIEKDWNWCISH----NTEGAELE-NSSDNMAQLAVQGPKA 150          
BLAST of FC868658 vs. ExPASy Swiss-Prot
Match: GCST_BACFN (Aminomethyltransferase OS=Bacteroides fragilis (strain ATCC 25285 / NCTC 9343) GN=gcvT PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.008e-18
Identity = 58/156 (37.18%), Postives = 85/156 (54.49%), Query Frame = 2
Query:  218 LKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLA 685
            +K T   + H+A G KM  FAG++MPI+Y   I E    C   G +FDVSHM    +KG   + FL+K+   +VA L PG    T F NE+GG +DD ++ + + +   LVVNA   +KD     +H      +G ++  +  D  + LA+QGP A
Sbjct:    1 MKTTPFTEKHIALGAKMHEFAGYNMPIEYSGIIDEHLTVCNGVG-VFDVSHMGEFWVKGPHALDFLQKVTSNNVAALVPGKIQYTCFPNEDGGIVDDLLVYQYEPEKYLLVVNASNIEKDWNWCISH----NTEGAELE-NSSDNMAQLAVQGPKA 150          
BLAST of FC868658 vs. ExPASy Swiss-Prot
Match: GCST_ECOLU (Aminomethyltransferase OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=gcvT PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.235e-18
Identity = 56/156 (35.90%), Postives = 82/156 (52.56%), Query Frame = 2
Query:  221 KKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAP-GTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLA 685
            ++T L++ H   G +MV F GW MP+ Y   I E     R +  +FDVSHM  + L+G     FL  L+  DVA L   G    +   N +GG IDD ++    +D   LVVN+  R+KDL+ I  H + F      +   + D+ S++A+QGP A
Sbjct:    3 QQTPLYEQHTLCGARMVDFHGWMMPLHYGSQIDEHHA-VRTDAGMFDVSHMTIVDLRGSRTREFLRYLLANDVAKLTKSGKALYSGMLNASGGVIDDLIVYYFSEDFFRLVVNSATREKDLSWITQHAEPF-----GIEITVRDDLSMIAVQGPNA 152          
BLAST of FC868658 vs. ExPASy Swiss-Prot
Match: GCST_ECO5E (Aminomethyltransferase OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=gcvT PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.235e-18
Identity = 56/156 (35.90%), Postives = 82/156 (52.56%), Query Frame = 2
Query:  221 KKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAP-GTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLA 685
            ++T L++ H   G +MV F GW MP+ Y   I E     R +  +FDVSHM  + L+G     FL  L+  DVA L   G    +   N +GG IDD ++    +D   LVVN+  R+KDL+ I  H + F      +   + D+ S++A+QGP A
Sbjct:    3 QQTPLYEQHTLCGARMVDFHGWMMPLHYGSQIDEHH-EVRTDAGMFDVSHMTIVDLRGSRTREFLRYLLANDVAKLTKSGKALYSGMLNASGGVIDDLIVYYFTEDFFRLVVNSATREKDLSWITQHAEPF-----GIEITVRDDLSMIAVQGPNA 152          
BLAST of FC868658 vs. ExPASy Swiss-Prot
Match: GCST_ECO57 (Aminomethyltransferase OS=Escherichia coli O157:H7 GN=gcvT PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.235e-18
Identity = 56/156 (35.90%), Postives = 82/156 (52.56%), Query Frame = 2
Query:  221 KKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAP-GTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLA 685
            ++T L++ H   G +MV F GW MP+ Y   I E     R +  +FDVSHM  + L+G     FL  L+  DVA L   G    +   N +GG IDD ++    +D   LVVN+  R+KDL+ I  H + F      +   + D+ S++A+QGP A
Sbjct:    3 QQTPLYEQHTLCGARMVDFHGWMMPLHYGSQIDEHH-EVRTDAGMFDVSHMTIVDLRGSRTREFLRYLLANDVAKLTKSGKALYSGMLNASGGVIDDLIVYYFTEDFFRLVVNSATREKDLSWITQHAEPF-----GIEITVRDDLSMIAVQGPNA 152          
The following BLAST results are available for this feature:
BLAST of FC868658 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 330
Match NameE-valueIdentityDescription
GCST_SYNPX2.350e-1836.48Aminomethyltransferase OS=Synechococcus sp. (strai... [more]
GCST_ERWT92.350e-1837.82Aminomethyltransferase OS=Erwinia tasmaniensis (st... [more]
GCST_ALTMD2.350e-1837.66Aminomethyltransferase OS=Alteromonas macleodii (s... [more]
GCST_SYNR34.008e-1839.04Aminomethyltransferase OS=Synechococcus sp. (strai... [more]
GCST_PSEA64.008e-1836.77Aminomethyltransferase OS=Pseudoalteromonas atlant... [more]
GCST_BACFR4.008e-1837.18Aminomethyltransferase OS=Bacteroides fragilis GN=... [more]
GCST_BACFN4.008e-1837.18Aminomethyltransferase OS=Bacteroides fragilis (st... [more]
GCST_ECOLU5.235e-1835.90Aminomethyltransferase OS=Escherichia coli O17:K52... [more]
GCST_ECO5E5.235e-1835.90Aminomethyltransferase OS=Escherichia coli O157:H7... [more]
GCST_ECO575.235e-1835.90Aminomethyltransferase OS=Escherichia coli O157:H7... [more]

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Properties
Property NameValue
Genbank descriptionC31003B08EF AbioticL1 Citrus clementina cDNA clone C31003B08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868658 ID=FC868658; Name=FC868658; organism=Citrus clementina; type=EST; length=685bp
GNAGCACCGCTCTCTCTGTGTATTCCTGGAGATGCTCTTTCGGGCTCCCA
GATTTGCTTGTTTCTGAGATAAAGAAGAAAACCCCATCTCTATATTTATA
TCGAATAAAATGAGAGGAGGGAGTCTGTGGCAGCTTGGACAATCGATCAC
CCGTCGTTTGGCTCTGGCTGATAAGAAGACTATAGCTCGTAGACACTTTG
CCTCAGATGCTGAAAACCTGAAAAAAACTGCCCTTCATGACTTTCATGTG
GCTAATGGTGGAAAGATGGTTCCATTTGCTGGATGGAGCATGCCTATTCA
GTACAAGGACTCAATTATGGAATCTACTTTGAATTGTCGGCAGAATGGTA
GTCTCTTTGATGTCTCCCATATGTGTGGGCTGAGCCTCAAAGGGAAGGAT
TGCGTCCCTTTCCTTGAGAAGCTTGTGATCGCTGATGTTGCTGGACTTGC
CCCAGGAACTGGGACTCTTACAGTCTTTACAAATGAAAATGGGGGTTCAA
TTGATGATTCGGTTATTACCAAGGTGAAGGATGATCACATATACCTTGTT
GTGAATGCTGGCTGCAGGGATAAGGATCTTGCTCACATTGAGGCACATAT
GAAGAGTTTCACAGCCAAAGGTGGGGATGTCTCGTGGCACATCCATGATG
AGAGATCTCTTCTTGCCCTTCAGGGCCCCCTTGCT
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