FC868658

Overview
NameFC868658
Unique NameFC868658
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length685
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868658 vs. ExPASy Swiss-Prot
Match: GCST_ECO24 (Aminomethyltransferase OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=gcvT PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 6.836e-18
Identity = 56/156 (35.90%), Postives = 82/156 (52.56%), Query Frame = 2
Query:  221 KKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAP-GTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLA 685
            ++T L++ H   G +MV F GW MP+ Y   I E     R +  +FDVSHM  + L+G     FL  L+  DVA L   G    +   N +GG IDD ++    +D   LVVN+  R+KDL+ I  H + F      +   + D+ S++A+QGP A
Sbjct:    3 QQTPLYEQHTLCGARMVDFHGWMMPLHYGSQIDEHHA-VRTDAGMFDVSHMTIVDLRGSRTREFLRYLLANDVAKLTKSGKALYSGMLNASGGVIDDLIVYYFTEDFFRLVVNSATREKDLSWITQHAEPF-----GIEITVRDDLSMIAVQGPNA 152          
BLAST of FC868658 vs. ExPASy Swiss-Prot
Match: GCST_BACTN (Aminomethyltransferase OS=Bacteroides thetaiotaomicron GN=gcvT PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 6.836e-18
Identity = 58/156 (37.18%), Postives = 83/156 (53.21%), Query Frame = 2
Query:  218 LKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLA 685
            +K T   + H+A G KM  FAG++MPI+Y   I E    C   G +FDVSHM    +KG   + FL+K+   +VA L PG    T F NE GG +DD ++   + +   LVVNA   +KD     +H      +G ++  +  D  + LA+QGP A
Sbjct:    1 MKTTPFTEKHIALGAKMHEFAGYNMPIEYSGIIDEHLTVCNAVG-VFDVSHMGEFWVKGPQALAFLQKVTSNNVAALVPGKIQYTCFPNEEGGIVDDLLVYCYEPEKYLLVVNAANIEKDWNWCVSH----NTEGAELE-NSSDNMAQLAVQGPKA 150          
BLAST of FC868658 vs. ExPASy Swiss-Prot
Match: GCST_SHIB3 (Aminomethyltransferase OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=gcvT PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.166e-17
Identity = 56/156 (35.90%), Postives = 82/156 (52.56%), Query Frame = 2
Query:  221 KKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAP-GTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLA 685
            ++T L++ H   G +MV F GW MP+ Y   I E     R +  +FDVSHM  + L+G     FL  L+  DVA L   G    +   N +GG IDD ++    +D   LVVN+  R+KDL+ I  H + F      +   + D+ S++A+QGP A
Sbjct:    3 QQTPLYEQHTLCGARMVDFHGWMMPLHYGSQIDEHHA-VRTDAGMFDVSHMTIVDLRGSRTREFLRYLLANDVAKLTKSGKALYSGMLNASGGVIDDLIVYYFTEDLFRLVVNSATREKDLSWITQHAEPF-----GIEITVRDDLSMIAVQGPNA 152          
BLAST of FC868658 vs. ExPASy Swiss-Prot
Match: GCST_SALAR (Aminomethyltransferase OS=Salmonella arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980) GN=gcvT PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.166e-17
Identity = 56/156 (35.90%), Postives = 81/156 (51.92%), Query Frame = 2
Query:  221 KKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAP-GTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLA 685
            ++T L++ H   G +MV F GW MP+ Y   + E     R +  +FDVSHM  + L G     FL  L+  DVA L   G    +   N +GG IDD ++    +D   LVVN+  R+KDLA I  H + +      +   + D+ SL+A+QGP A
Sbjct:    3 QQTPLYEQHTLCGARMVDFHGWMMPLHYGSQLDEHHA-VRTDAGMFDVSHMTIVDLHGSRTREFLRYLLANDVAKLTKTGKALYSGMLNASGGVIDDLIVYYFTEDFFRLVVNSATREKDLAWITQHAEPYA-----IDITVRDDLSLIAVQGPNA 152          
BLAST of FC868658 vs. ExPASy Swiss-Prot
Match: GCST_PSESM (Aminomethyltransferase OS=Pseudomonas syringae pv. tomato GN=gcvT PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.166e-17
Identity = 56/156 (35.90%), Postives = 83/156 (53.21%), Query Frame = 2
Query:  221 KKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGL-APGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLA 685
            ++T L D H+A G KMV F GW MP+ Y   + E     R++  +FDVSHM  + + G++   +L +L+  DV  L  PG    +   +E  G IDD ++    D +  LVVNA    KDLA +++ +  F     DV      E ++LA+QGP A
Sbjct:    3 QRTPLFDLHLALGAKMVDFGGWDMPLHYGSQVEEHH-QVRRDCGVFDVSHMNVIDVLGREAKAWLRRLLANDVDKLKTPGRALYSAMLDEQAGVIDDMIVYLTADGY-RLVVNAATGAKDLAWMQSQLGDF-----DVQLLARSEMAMLAIQGPQA 151          
BLAST of FC868658 vs. ExPASy Swiss-Prot
Match: GCST_COXBU (Aminomethyltransferase OS=Coxiella burnetii GN=gcvT PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.166e-17
Identity = 59/156 (37.82%), Postives = 78/156 (50.00%), Query Frame = 2
Query:  221 KKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAP-GTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLA 685
            + + L++ H       V FAGW MP+ Y   I E     RQ   +FDVSHM  + L+G++   FL  L+  DVA L+  G    T   N  GG IDD ++ +V      LVVNA  RDKD+A I+         G  VS     E  +LA+QGP A
Sbjct:    3 RHSPLYEEHAKAKAHFVDFAGWEMPLHYGSQIEEHH-QVRQRAGIFDVSHMGVIDLEGEEATAFLRYLLANDVAKLSDVGRALYTCMLNPQGGVIDDLIVYRVAPTGYRLVVNAATRDKDIAWIKE-----KGAGYKVSISERPEMCILAVQGPQA 152          
BLAST of FC868658 vs. ExPASy Swiss-Prot
Match: GCST_CITK8 (Aminomethyltransferase OS=Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) GN=gcvT PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.166e-17
Identity = 55/156 (35.26%), Postives = 82/156 (52.56%), Query Frame = 2
Query:  221 KKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAP-GTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLA 685
            ++T L++ H   G +MV F GW MP+ Y   + E     R +  +FDVSHM  + L+G     FL  L+  DVA L   G    +   N +GG IDD ++    +D   LVVN+  R+KDL+ I  H + +      +   + D+ SL+A+QGP A
Sbjct:    3 QQTPLYEQHTLCGARMVDFHGWMMPLHYGSQLDEHHA-VRTDAGMFDVSHMTIVDLRGSRTREFLRYLLANDVAKLTKTGKALYSGMLNASGGVIDDLIVYYFTEDFFRLVVNSATREKDLSWITQHAEPYA-----IDITVRDDLSLIAVQGPNA 152          
BLAST of FC868658 vs. ExPASy Swiss-Prot
Match: GCST_THEEB (Aminomethyltransferase OS=Thermosynechococcus elongatus (strain BP-1) GN=gcvT PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.523e-17
Identity = 60/164 (36.59%), Postives = 87/164 (53.05%), Query Frame = 2
Query:  203 SDAENLKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERS---LLALQGPLA 685
            S AE L++T L+  H   G +  PF  W MP+QY  SI++     RQ   +FD+SHM  L L+G+  +  L+ LV  +++ L PG    TV  NE GG +DD VI  + D  +  +VNA    KD A  + ++ +        S  + DE +   L+ALQGP A
Sbjct:    3 SMAEALQRTPLYPLH--QGARFTPFGDWEMPLQYS-SILQEHQAVRQQVGMFDISHMGKLVLRGEGVLGALQTLVPTNLSQLQPGQAKYTVLLNEAGGIVDD-VILYMGDGQVRCIVNAATTAKDWAWFQKYLPA--------SIEVIDESASQVLIALQGPAA 154          
BLAST of FC868658 vs. ExPASy Swiss-Prot
Match: GCST_PSEPK (Aminomethyltransferase OS=Pseudomonas putida (strain KT2440) GN=gcvT PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.523e-17
Identity = 55/156 (35.26%), Postives = 84/156 (53.85%), Query Frame = 2
Query:  221 KKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGL-APGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLA 685
            ++T L+D H+A G K V F GW MP+ Y  S +E     R +  +FDVSHM  + + G D   +L++L+  DVA L  PG    +   NE GG IDD ++ + +  +  LV NA  R K L  ++     F+     V + +  + ++LA+QGP A
Sbjct:    3 QRTLLYDLHLALGAKTVDFGGWDMPLHY-GSQVEEHHQVRSDCGVFDVSHMTVIDVDGTDATVWLQRLLANDVARLDDPGKALYSPLLNEQGGVIDDLIVYRTETGY-RLVTNAATRAKVLDWLQLQRAGFS-----VDFQVRPDLAILAIQGPRA 151          
BLAST of FC868658 vs. ExPASy Swiss-Prot
Match: GCST_EXIS2 (Aminomethyltransferase OS=Exiguobacterium sibiricum (strain DSM 17290 / JCM 13490 / 255-15) GN=gcvT PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.523e-17
Identity = 57/157 (36.31%), Postives = 87/157 (55.41%), Query Frame = 2
Query:  218 LKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSW-HIHDERSLLALQGPLA 685
            LK+T L D  +A  GKMV FAG+ MP+ +  SI E     R+   +FDVSHM  L + G D + FL++ +  D++ +A G     V   E+GG++DD ++ ++ +    LVVNA   +KD AH+  ++       GDV   +  D    +A+QGP A
Sbjct:    6 LKRTPLFDI-IAPTGKMVDFAGFEMPVLFS-SIKEEHTAVRERVGMFDVSHMGELFVSGSDALAFLQQTLSNDISKIAIGQAQYNVLCQEDGGTVDDLLVYRLDEQDYLLVVNASNIEKDEAHLRQYLT------GDVLLENQSDAYGQIAVQGPKA 154          
The following BLAST results are available for this feature:
BLAST of FC868658 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 330
Match NameE-valueIdentityDescription
GCST_ECO246.836e-1835.90Aminomethyltransferase OS=Escherichia coli O139:H2... [more]
GCST_BACTN6.836e-1837.18Aminomethyltransferase OS=Bacteroides thetaiotaomi... [more]
GCST_SHIB31.166e-1735.90Aminomethyltransferase OS=Shigella boydii serotype... [more]
GCST_SALAR1.166e-1735.90Aminomethyltransferase OS=Salmonella arizonae (str... [more]
GCST_PSESM1.166e-1735.90Aminomethyltransferase OS=Pseudomonas syringae pv.... [more]
GCST_COXBU1.166e-1737.82Aminomethyltransferase OS=Coxiella burnetii GN=gcv... [more]
GCST_CITK81.166e-1735.26Aminomethyltransferase OS=Citrobacter koseri (stra... [more]
GCST_THEEB1.523e-1736.59Aminomethyltransferase OS=Thermosynechococcus elon... [more]
GCST_PSEPK1.523e-1735.26Aminomethyltransferase OS=Pseudomonas putida (stra... [more]
GCST_EXIS21.523e-1736.31Aminomethyltransferase OS=Exiguobacterium sibiricu... [more]

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Properties
Property NameValue
Genbank descriptionC31003B08EF AbioticL1 Citrus clementina cDNA clone C31003B08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868658 ID=FC868658; Name=FC868658; organism=Citrus clementina; type=EST; length=685bp
GNAGCACCGCTCTCTCTGTGTATTCCTGGAGATGCTCTTTCGGGCTCCCA
GATTTGCTTGTTTCTGAGATAAAGAAGAAAACCCCATCTCTATATTTATA
TCGAATAAAATGAGAGGAGGGAGTCTGTGGCAGCTTGGACAATCGATCAC
CCGTCGTTTGGCTCTGGCTGATAAGAAGACTATAGCTCGTAGACACTTTG
CCTCAGATGCTGAAAACCTGAAAAAAACTGCCCTTCATGACTTTCATGTG
GCTAATGGTGGAAAGATGGTTCCATTTGCTGGATGGAGCATGCCTATTCA
GTACAAGGACTCAATTATGGAATCTACTTTGAATTGTCGGCAGAATGGTA
GTCTCTTTGATGTCTCCCATATGTGTGGGCTGAGCCTCAAAGGGAAGGAT
TGCGTCCCTTTCCTTGAGAAGCTTGTGATCGCTGATGTTGCTGGACTTGC
CCCAGGAACTGGGACTCTTACAGTCTTTACAAATGAAAATGGGGGTTCAA
TTGATGATTCGGTTATTACCAAGGTGAAGGATGATCACATATACCTTGTT
GTGAATGCTGGCTGCAGGGATAAGGATCTTGCTCACATTGAGGCACATAT
GAAGAGTTTCACAGCCAAAGGTGGGGATGTCTCGTGGCACATCCATGATG
AGAGATCTCTTCTTGCCCTTCAGGGCCCCCTTGCT
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