FC868658

Overview
NameFC868658
Unique NameFC868658
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length685
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868658 vs. ExPASy Swiss-Prot
Match: GCST_SALA4 (Aminomethyltransferase OS=Salmonella agona (strain SL483) GN=gcvT PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.598e-17
Identity = 55/156 (35.26%), Postives = 81/156 (51.92%), Query Frame = 2
Query:  221 KKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAP-GTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLA 685
            ++T L++ H   G +MV F GW MP+ Y   + E     R +  +FDVSHM  + L G     FL  L+  DVA L   G    +   N +GG IDD ++    +D   LVVN+  R+KDL+ I  H + +      +   + D+ SL+A+QGP A
Sbjct:    3 QQTPLYEQHTLCGARMVDFHGWMMPLHYGSQLDEHHA-VRTDAGMFDVSHMTIVDLHGSRTREFLRYLLANDVAKLTKTGKALYSGMLNASGGVIDDLIVYYFTEDFFRLVVNSATREKDLSWITQHAEPYA-----IDITVRDDLSLIAVQGPNA 152          
BLAST of FC868658 vs. ExPASy Swiss-Prot
Match: GCST_PROMT (Aminomethyltransferase OS=Prochlorococcus marinus (strain NATL2A) GN=gcvT PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.598e-17
Identity = 57/161 (35.40%), Postives = 83/161 (51.55%), Query Frame = 2
Query:  218 LKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVI-----TKVKDDHIYLVVNAGCRDKDLAHIEAHM--KSFTAKGGDVSWHIHDERSLLALQGP 679
            L +T L+      GGKMVPFA W MP+ +   I E     R+N  +FD+SHM  + LKGK+    L+ LV +DV  + P     TVF  ENGG  DD +I         ++ I LV+NA  ++ D+  + +++  K  T            E +L+A+QGP
Sbjct:    3 LLQTPLYQECKELGGKMVPFANWEMPVSFSGLIEEHNA-VRKNVGMFDISHMGVVQLKGKNIKSALQNLVPSDVFRIGPSEACYTVFLKENGGIQDDLIIYDQGVLDTNEESIVLVINAARKESDIEWLSSNLFKKEITIS------EFMPEGALIAIQGP 156          
BLAST of FC868658 vs. ExPASy Swiss-Prot
Match: GCST_LISMC (Aminomethyltransferase OS=Listeria monocytogenes serotype 4b (strain Clip81459) GN=gcvT PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.598e-17
Identity = 54/157 (34.39%), Postives = 79/157 (50.32%), Query Frame = 2
Query:  218 LKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVS-WHIHDERSLLALQGPLA 685
            L KT +H  +   G K + F GW +P+Q+     E     R +  LFDVSHM  + +KG D   +L+ L+  D+  +  G     +   E GG++DD V+ K  +    LVVNA   DKD   +  +++      GDVS  ++  E   LALQGP A
Sbjct:    4 LLKTPIHPLYAKYGAKTIDFGGWDLPVQFAGIKAEHEA-VRTDAGLFDVSHMGEILVKGPDSTSYLQYLLTNDIEKIKIGKAQYNIMCYETGGTVDDLVVYKKSETEYILVVNAANTDKDFEWMVKNIR------GDVSVTNVSSEYGQLALQGPNA 153          
BLAST of FC868658 vs. ExPASy Swiss-Prot
Match: GCST_LEPBP (Aminomethyltransferase OS=Leptospira biflexa serovar Patoc (strain Patoc 1 / ATCC 23582 / Paris) GN=gcvT PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.598e-17
Identity = 55/159 (34.59%), Postives = 77/159 (48.43%), Query Frame = 2
Query:  218 LKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKG--KDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGD-VSWHIHDERSLLALQGPLA 685
            LK+T LH  H   G KMVPF GW MP+QY   I++  L  R N  +FDVSHM  + + G   D + FLE +    ++ +  G        NE GG +DD  + K  D    +  NA   +    H+  ++K   +   D  +WH       +ALQGP A
Sbjct:    3 LKQTPLHSIHKEMGAKMVPFGGWDMPVQY-TGIIQEHLATRANAGIFDVSHMGEIFVTGDANDVLDFLESVTCNTISTMKEGQVQYNAVVNEVGGLVDDITVYKFNDTKYMICSNASNFEAVTQHLLKYVKGNVSIANDSKNWH------QIALQGPKA 154          
BLAST of FC868658 vs. ExPASy Swiss-Prot
Match: GCST_LEPBA (Aminomethyltransferase OS=Leptospira biflexa serovar Patoc (strain Patoc 1 / Ames) GN=gcvT PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.598e-17
Identity = 55/159 (34.59%), Postives = 77/159 (48.43%), Query Frame = 2
Query:  218 LKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKG--KDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGD-VSWHIHDERSLLALQGPLA 685
            LK+T LH  H   G KMVPF GW MP+QY   I++  L  R N  +FDVSHM  + + G   D + FLE +    ++ +  G        NE GG +DD  + K  D    +  NA   +    H+  ++K   +   D  +WH       +ALQGP A
Sbjct:    3 LKQTPLHSIHKEMGAKMVPFGGWDMPVQY-TGIIQEHLATRANAGIFDVSHMGEIFVTGDANDVLDFLESVTCNTISTMKEGQVQYNAVVNEVGGLVDDITVYKFNDTKYMICSNASNFEAVTQHLLKYVKGNVSIANDSKNWH------QIALQGPKA 154          
BLAST of FC868658 vs. ExPASy Swiss-Prot
Match: GCST_ANASP (Aminomethyltransferase OS=Anabaena sp. (strain PCC 7120) GN=gcvT PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.598e-17
Identity = 54/164 (32.93%), Postives = 84/164 (51.22%), Query Frame = 2
Query:  209 AENLKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDH-----IYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLA 685
            AE L +T L+   V    ++  F GW MP+Q+     E     R    +FD+SHM   +L+GK+ +  L+ LV +D++ L PG    TV  N  GG IDD ++    +D+      +++VNA    KD A I +H+     +  D+S      + L+A+QGP A
Sbjct:    8 AETLARTPLYQLGVELKARLTSFGGWEMPVQFSGITREHEA-VRNAAGMFDISHMGKFTLQGKNLISQLQGLVPSDLSRLQPGQAQYTVLLNPQGGIIDDIIVYYQGEDNTGTQQAFIIVNAATTSKDKAWILSHLDQNQVQFQDIS----PAKVLIAIQGPKA 166          
BLAST of FC868658 vs. ExPASy Swiss-Prot
Match: GCST_SHIF8 (Aminomethyltransferase OS=Shigella flexneri serotype 5b (strain 8401) GN=gcvT PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.393e-17
Identity = 55/156 (35.26%), Postives = 81/156 (51.92%), Query Frame = 2
Query:  221 KKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAP-GTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLA 685
            ++T L++ H   G +MV F  W MP+ Y   I E     R +  +FDVSHM  + L+G     FL  L+  DVA L   G    +   N +GG IDD ++    +D   LVVN+  R+KDL+ I  H + F      +   + D+ S++A+QGP A
Sbjct:    3 QQTPLYEQHTLCGARMVDFHSWMMPLHYGSQIDEHHA-VRTDAGMFDVSHMTIVDLRGSRTREFLRYLLANDVAKLTKSGKALYSGMLNASGGVIDDLIVYYFTEDFFRLVVNSATREKDLSWITQHAEPF-----GIEITVRDDLSMIAVQGPNA 152          
BLAST of FC868658 vs. ExPASy Swiss-Prot
Match: GCST_LISMO (Aminomethyltransferase OS=Listeria monocytogenes GN=gcvT PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.393e-17
Identity = 54/157 (34.39%), Postives = 79/157 (50.32%), Query Frame = 2
Query:  218 LKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVS-WHIHDERSLLALQGPLA 685
            L KT +H  +   G K + F GW +P+Q+     E     R +  LFDVSHM  + +KG D   +L+ L+  D+  +  G     +   E GG++DD V+ K  +    LVVNA   DKD   +  +++      GDVS  ++  E   LALQGP A
Sbjct:    4 LLKTPIHPLYAKYGAKTIDFGGWDLPVQFAGIKAEHEA-VRTDAGLFDVSHMGEILVKGPDSTSYLQYLLSNDIEKIKIGKAQYNIMCYETGGTVDDLVVYKKSETEYILVVNAANTDKDFEWMVKNIR------GDVSVTNVSSEYGQLALQGPNA 153          
BLAST of FC868658 vs. ExPASy Swiss-Prot
Match: GCST_XANOR (Aminomethyltransferase OS=Xanthomonas oryzae pv. oryzae GN=gcvT PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.431e-17
Identity = 59/156 (37.82%), Postives = 78/156 (50.00%), Query Frame = 2
Query:  221 KKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGL-APGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLA 685
            +KT L+D H A G KMV F GW MPI Y  S ++     R++  +FDVSHM  + L G     FL  L+   V  L   G    T   N  GG IDD ++  + +D   LVVNA  R+KDL  I      F     DV      + +++A+QGP A
Sbjct:    3 QKTILNDTHRALGAKMVDFGGWDMPIHY-GSQLDEHHQVRRDAGMFDVSHMTVVDLHGARVRAFLRDLLANSVDKLKVCGKALYTCMLNPQGGVIDDLIVYYMSEDFFRLVVNAATREKDLQWIGEQAVRF-----DVRVEERSDFAMIAVQGPNA 152          
BLAST of FC868658 vs. ExPASy Swiss-Prot
Match: GCST_XANOP (Aminomethyltransferase OS=Xanthomonas oryzae pv. oryzae (strain PXO99A) GN=gcvT PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.431e-17
Identity = 59/156 (37.82%), Postives = 78/156 (50.00%), Query Frame = 2
Query:  221 KKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGL-APGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLA 685
            +KT L+D H A G KMV F GW MPI Y  S ++     R++  +FDVSHM  + L G     FL  L+   V  L   G    T   N  GG IDD ++  + +D   LVVNA  R+KDL  I      F     DV      + +++A+QGP A
Sbjct:    3 QKTILNDTHRALGAKMVDFGGWDMPIHY-GSQLDEHHQVRRDAGMFDVSHMTVVDLHGARVRAFLRDLLANSVDKLKVCGKALYTCMLNPQGGVIDDLIVYYMSEDFFRLVVNAATREKDLQWIGEQAVRF-----DVRVEERSDFAMIAVQGPNA 152          
The following BLAST results are available for this feature:
BLAST of FC868658 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 330
Match NameE-valueIdentityDescription
GCST_SALA42.598e-1735.26Aminomethyltransferase OS=Salmonella agona (strain... [more]
GCST_PROMT2.598e-1735.40Aminomethyltransferase OS=Prochlorococcus marinus ... [more]
GCST_LISMC2.598e-1734.39Aminomethyltransferase OS=Listeria monocytogenes s... [more]
GCST_LEPBP2.598e-1734.59Aminomethyltransferase OS=Leptospira biflexa serov... [more]
GCST_LEPBA2.598e-1734.59Aminomethyltransferase OS=Leptospira biflexa serov... [more]
GCST_ANASP2.598e-1732.93Aminomethyltransferase OS=Anabaena sp. (strain PCC... [more]
GCST_SHIF83.393e-1735.26Aminomethyltransferase OS=Shigella flexneri seroty... [more]
GCST_LISMO3.393e-1734.39Aminomethyltransferase OS=Listeria monocytogenes G... [more]
GCST_XANOR4.431e-1737.82Aminomethyltransferase OS=Xanthomonas oryzae pv. o... [more]
GCST_XANOP4.431e-1737.82Aminomethyltransferase OS=Xanthomonas oryzae pv. o... [more]

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Properties
Property NameValue
Genbank descriptionC31003B08EF AbioticL1 Citrus clementina cDNA clone C31003B08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868658 ID=FC868658; Name=FC868658; organism=Citrus clementina; type=EST; length=685bp
GNAGCACCGCTCTCTCTGTGTATTCCTGGAGATGCTCTTTCGGGCTCCCA
GATTTGCTTGTTTCTGAGATAAAGAAGAAAACCCCATCTCTATATTTATA
TCGAATAAAATGAGAGGAGGGAGTCTGTGGCAGCTTGGACAATCGATCAC
CCGTCGTTTGGCTCTGGCTGATAAGAAGACTATAGCTCGTAGACACTTTG
CCTCAGATGCTGAAAACCTGAAAAAAACTGCCCTTCATGACTTTCATGTG
GCTAATGGTGGAAAGATGGTTCCATTTGCTGGATGGAGCATGCCTATTCA
GTACAAGGACTCAATTATGGAATCTACTTTGAATTGTCGGCAGAATGGTA
GTCTCTTTGATGTCTCCCATATGTGTGGGCTGAGCCTCAAAGGGAAGGAT
TGCGTCCCTTTCCTTGAGAAGCTTGTGATCGCTGATGTTGCTGGACTTGC
CCCAGGAACTGGGACTCTTACAGTCTTTACAAATGAAAATGGGGGTTCAA
TTGATGATTCGGTTATTACCAAGGTGAAGGATGATCACATATACCTTGTT
GTGAATGCTGGCTGCAGGGATAAGGATCTTGCTCACATTGAGGCACATAT
GAAGAGTTTCACAGCCAAAGGTGGGGATGTCTCGTGGCACATCCATGATG
AGAGATCTCTTCTTGCCCTTCAGGGCCCCCTTGCT
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