FC868658

Overview
NameFC868658
Unique NameFC868658
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length685
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868658 vs. ExPASy Swiss-Prot
Match: GCST_XANOM (Aminomethyltransferase OS=Xanthomonas oryzae pv. oryzae (strain MAFF 311018) GN=gcvT PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.431e-17
Identity = 59/156 (37.82%), Postives = 78/156 (50.00%), Query Frame = 2
Query:  221 KKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGL-APGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLA 685
            +KT L+D H A G KMV F GW MPI Y  S ++     R++  +FDVSHM  + L G     FL  L+   V  L   G    T   N  GG IDD ++  + +D   LVVNA  R+KDL  I      F     DV      + +++A+QGP A
Sbjct:    3 QKTILNDTHRALGAKMVDFGGWDMPIHY-GSQLDEHHQVRRDAGMFDVSHMTVVDLHGARVRAFLRDLLANSVDKLKVCGKALYTCMLNPQGGVIDDLIVYYMSEDFFRLVVNAATREKDLQWIGEQAVRF-----DVRVEERSDFAMIAVQGPNA 152          
BLAST of FC868658 vs. ExPASy Swiss-Prot
Match: GCST_XANC5 (Aminomethyltransferase OS=Xanthomonas campestris pv. vesicatoria (strain 85-10) GN=gcvT PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.431e-17
Identity = 58/154 (37.66%), Postives = 77/154 (50.00%), Query Frame = 2
Query:  221 KKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGL-APGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGP 679
            +KT L+D H A G KMV F GW MPI Y  S ++     R++  +FDVSHM  + L G     FL  L+   V  L   G    T   N  GG IDD ++  + +D   LVVNA  R+KDL  I      F     DV      + +++A+QGP
Sbjct:    3 QKTILNDTHRALGAKMVDFGGWDMPIHY-GSQLDEHHQVRRDAGMFDVSHMTVVDLHGARVREFLRYLLANSVDKLKVSGKALYTCMLNPQGGVIDDLIVYYMTEDFFRLVVNAATREKDLQWIGEQAARF-----DVRVEERSDFAMIAVQGP 150          
BLAST of FC868658 vs. ExPASy Swiss-Prot
Match: GCST_PROM1 (Aminomethyltransferase OS=Prochlorococcus marinus (strain NATL1A) GN=gcvT PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.431e-17
Identity = 55/159 (34.59%), Postives = 83/159 (52.20%), Query Frame = 2
Query:  218 LKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVI-----TKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGP 679
            L +T L+      GGKMVPFA W MP+ +   I E     R+N  +FD+SHM  + LKGK+    L+ LV +DV  + P     TVF  ENGG  DD +I         ++ + LV+NA  ++ D+  + +++    +K          E +L+A+QGP
Sbjct:    3 LLQTPLYQECKELGGKMVPFANWEMPVSFSGLIEEHNA-VRKNVGMFDISHMGVVQLKGKNIKSALQNLVPSDVFRIGPSEACYTVFLKENGGIQDDLIIYDQGVLDTNEESVVLVINAARKESDVEWLSSNL----SKKEITISEFMPEGALIAIQGP 156          
BLAST of FC868658 vs. ExPASy Swiss-Prot
Match: GCST_MYCUA (Aminomethyltransferase OS=Mycobacterium ulcerans (strain Agy99) GN=gcvT PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.431e-17
Identity = 54/159 (33.96%), Postives = 76/159 (47.80%), Query Frame = 2
Query:  203 SDAENLKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGP 679
            SDA  L +  L D H A G     F GW MP+ Y  ++ E     R    LFDVSH+    ++G     F+   +  D+  + PG    T+  NE+GG IDD +   V DD I+LV NA      +A ++A      A  G     +H   ++LA+QGP
Sbjct:    2 SDAPELMQGPLEDRHRALGASFAEFGGWLMPVSYTGTVSEHNAT-RNAAGLFDVSHLGKALVRGPGAAEFVNSALTNDLRRIGPGKAQYTLCCNESGGVIDDLIAYYVADDEIFLVPNAANTAAVVAALQA-----AAPSGLTITDLHRSYAVLAVQGP 154          
BLAST of FC868658 vs. ExPASy Swiss-Prot
Match: GCST_LEPBL (Aminomethyltransferase OS=Leptospira borgpetersenii serovar Hardjo-bovis (strain L550) GN=gcvT PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.431e-17
Identity = 58/160 (36.25%), Postives = 79/160 (49.38%), Query Frame = 2
Query:  218 LKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKG--KDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVS--WHIHDERSLLALQGPLA 685
            +K+T L++ H A G KM+PF GW MP+QY   I E     R+   LFDVSHM  + + G  K  + FLE +    VA L+          NENGG +DD  I K   +   +  NA   +   AH+  ++ +   K  D S  WH       +ALQGP A
Sbjct:    4 VKRTPLYETHRALGAKMIPFGGWDMPVQYSGIIAEHNAT-REAAGLFDVSHMGEIFITGEPKIVLDFLELVTCNSVASLSDFQVQYNAILNENGGLVDDVTIYKFSAEKYMICSNASNYETVTAHLLKYLPASGVKVSDQSPNWH------QIALQGPKA 156          
BLAST of FC868658 vs. ExPASy Swiss-Prot
Match: GCST_KLEP7 (Aminomethyltransferase OS=Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578) GN=gcvT PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.431e-17
Identity = 56/156 (35.90%), Postives = 83/156 (53.21%), Query Frame = 2
Query:  221 KKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLA-PGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLA 685
            ++T L++ H   G +MV F GW MP+ Y   I E     R +  +FDVSHM  +   G     FL  L+  DVA L  PG    T     + G IDD ++  + +D+  LVVN+  R+KDLA I    + +   G +++  + D+ SL+A+QGP A
Sbjct:    3 QQTPLYEQHTLCGARMVDFHGWMMPLHYGSQIDEHHA-VRGDAGMFDVSHMTIVDFHGSRIREFLRYLLANDVAKLTTPGKALYTGMLTASAGVIDDLIVYFLSEDYFRLVVNSATREKDLAWISEQAEPY---GLEIT--VRDDLSLIAVQGPQA 152          
BLAST of FC868658 vs. ExPASy Swiss-Prot
Match: GCST_SACD2 (Aminomethyltransferase OS=Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17024) GN=gcvT PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 5.787e-17
Identity = 55/157 (35.03%), Postives = 83/157 (52.87%), Query Frame = 2
Query:  218 LKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAP-GTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLA 685
            L +T L   H   GGKMV F GW MP+ Y   + E     R +  +FDVSHM  + + G     FL+ ++  DVA L   G    +   N  GG +DD ++  ++  +  +VVN   R+KDLA +  H     AKG +V+ +  D+ +++A+QGP A
Sbjct:    2 LNETVLAPLHREIGGKMVDFGGWDMPLHYGSQVEEHQ-KVRTDAGMFDVSHMTVVDVTGAGAKTFLQYVLANDVAKLTKNGKALYSGMLNHEGGVVDDLIVYLMEWGY-RVVVNCATREKDLAWMVEH-----AKGFEVALNERDDLAMIAVQGPAA 151          
BLAST of FC868658 vs. ExPASy Swiss-Prot
Match: GCST_LISW6 (Aminomethyltransferase OS=Listeria welshimeri serovar 6b (strain ATCC 35897 / DSM 20650 / SLCC5334) GN=gcvT PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 5.787e-17
Identity = 53/157 (33.76%), Postives = 80/157 (50.96%), Query Frame = 2
Query:  218 LKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVS-WHIHDERSLLALQGPLA 685
            L KT +H  +   G K + F GW +P+Q+     E     R +  LFDVSHM  + +KG D   +L+ L+  D+  +  G     +   ENGG++DD V+ K  +    LVVNA   +KD   +  +++      GDV+  ++  E   LALQGP A
Sbjct:    4 LLKTPIHPLYAKYGAKTIDFGGWDLPVQFAGIKAEHEA-VRTDAGLFDVSHMGEILVKGPDSTSYLQYLLSNDIEKIKIGKAQYNIMCYENGGTVDDLVVYKKSETEYILVVNAANTEKDFEWMVQNVR------GDVTVTNVSAEYGQLALQGPSA 153          
BLAST of FC868658 vs. ExPASy Swiss-Prot
Match: GCST_LEPBJ (Aminomethyltransferase OS=Leptospira borgpetersenii serovar Hardjo-bovis (strain JB197) GN=gcvT PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 5.787e-17
Identity = 58/160 (36.25%), Postives = 79/160 (49.38%), Query Frame = 2
Query:  218 LKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKG--KDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVS--WHIHDERSLLALQGPLA 685
            +K+T L++ H A G KM+PF GW MP+QY   I E     R+   LFDVSHM  + + G  K  + FLE +    VA L+          NENGG +DD  I K   +   +  NA   +   AH+  ++ +   K  D S  WH       +ALQGP A
Sbjct:    4 VKRTPLYETHRALGAKMIPFGGWDMPVQYSGIIAEHNAT-REAAGLFDVSHMGEIFITGEPKIVLDFLELVTCNSVASLSDFQVQYNAILNENGGLVDDVTIYKFSVEKYMICSNASNYETVTAHLLKYLPASGVKVSDQSPNWH------QIALQGPKA 156          
BLAST of FC868658 vs. ExPASy Swiss-Prot
Match: GCST_HALOH (Aminomethyltransferase OS=Halothermothrix orenii (strain H 168 / OCM 544 / DSM 9562) GN=gcvT PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 5.787e-17
Identity = 55/154 (35.71%), Postives = 80/154 (51.95%), Query Frame = 2
Query:  218 LKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGP 679
            +KKT L + H   G +++ F GWSMP+QY  SI+E     R    LFDVSHM  + ++G   +  L+K+V  +VA L  G    T    ++GG IDD ++  +  D   +VVNA   +KD   +  +    T    +      D  +LLALQGP
Sbjct:    1 MKKTPLFEIHKELGARLIEFHGWSMPVQYT-SIIEEHKAVRNQCGLFDVSHMGEILVEGPGALESLQKIVTNNVARLKKGQVLYTPMCKDDGGIIDDLLVYCLGQDKYLMVVNASNIEKDFNWVRDNSNQRTEVVNE-----SDNYALLALQGP 148          
The following BLAST results are available for this feature:
BLAST of FC868658 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 330
Match NameE-valueIdentityDescription
GCST_XANOM4.431e-1737.82Aminomethyltransferase OS=Xanthomonas oryzae pv. o... [more]
GCST_XANC54.431e-1737.66Aminomethyltransferase OS=Xanthomonas campestris p... [more]
GCST_PROM14.431e-1734.59Aminomethyltransferase OS=Prochlorococcus marinus ... [more]
GCST_MYCUA4.431e-1733.96Aminomethyltransferase OS=Mycobacterium ulcerans (... [more]
GCST_LEPBL4.431e-1736.25Aminomethyltransferase OS=Leptospira borgpeterseni... [more]
GCST_KLEP74.431e-1735.90Aminomethyltransferase OS=Klebsiella pneumoniae su... [more]
GCST_SACD25.787e-1735.03Aminomethyltransferase OS=Saccharophagus degradans... [more]
GCST_LISW65.787e-1733.76Aminomethyltransferase OS=Listeria welshimeri sero... [more]
GCST_LEPBJ5.787e-1736.25Aminomethyltransferase OS=Leptospira borgpeterseni... [more]
GCST_HALOH5.787e-1735.71Aminomethyltransferase OS=Halothermothrix orenii (... [more]

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Properties
Property NameValue
Genbank descriptionC31003B08EF AbioticL1 Citrus clementina cDNA clone C31003B08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868658 ID=FC868658; Name=FC868658; organism=Citrus clementina; type=EST; length=685bp
GNAGCACCGCTCTCTCTGTGTATTCCTGGAGATGCTCTTTCGGGCTCCCA
GATTTGCTTGTTTCTGAGATAAAGAAGAAAACCCCATCTCTATATTTATA
TCGAATAAAATGAGAGGAGGGAGTCTGTGGCAGCTTGGACAATCGATCAC
CCGTCGTTTGGCTCTGGCTGATAAGAAGACTATAGCTCGTAGACACTTTG
CCTCAGATGCTGAAAACCTGAAAAAAACTGCCCTTCATGACTTTCATGTG
GCTAATGGTGGAAAGATGGTTCCATTTGCTGGATGGAGCATGCCTATTCA
GTACAAGGACTCAATTATGGAATCTACTTTGAATTGTCGGCAGAATGGTA
GTCTCTTTGATGTCTCCCATATGTGTGGGCTGAGCCTCAAAGGGAAGGAT
TGCGTCCCTTTCCTTGAGAAGCTTGTGATCGCTGATGTTGCTGGACTTGC
CCCAGGAACTGGGACTCTTACAGTCTTTACAAATGAAAATGGGGGTTCAA
TTGATGATTCGGTTATTACCAAGGTGAAGGATGATCACATATACCTTGTT
GTGAATGCTGGCTGCAGGGATAAGGATCTTGCTCACATTGAGGCACATAT
GAAGAGTTTCACAGCCAAAGGTGGGGATGTCTCGTGGCACATCCATGATG
AGAGATCTCTTCTTGCCCTTCAGGGCCCCCTTGCT
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